The aim of this paper is to introduce, elucidate and defend the usefulness of a variant of grounding, or metaphysical explanation, that has the feature that the grounds explain of some states of affairs that one of them obtains without explaining which one obtains. I will dub this variant arbitrary grounding. After informally elucidating the basic idea in the first section, I will provide three metaphysical hypotheses that are best formulated in terms of arbitrary grounding in the second section. The (...) third section will be concerned with the relation between arbitrary grounding and non-arbitrary grounding. The fourth section will compare arbitrary grounding to two extant proposals in the literature. (shrink)

Modal dispositionalists hold that dispositions provide the foundation of metaphysical necessity and possibility. According to the kind of modal dispositionalism that can be found in the present literature, a proposition p is possible just in case some things are disposed to be such that p. In the first part of this paper I show that combining this classic form of dispositionalism with the assumptions that the laws of nature are necessary and deterministic and that all dispositions are forward-looking in time (...) leads to the unattractive conclusion that every truth is necessary. I argue that the classic dispositionalist should be troubled by this result and in the second part of the paper I suggest a novel variant of dispositionalism that avoids it. This extended form of dispositionalism allows that some propositions are only indirectly underwritten by dispositions. (shrink)

The thesis of Weak Unrestricted Composition says that every pair of objects has a fusion. This thesis has been argued by Contessa and Smith to be compatible with the world being junky and hence to evade an argument against the necessity of Strong Unrestricted Composition proposed by Bohn. However, neither Weak Unrestricted Composition alone nor the different variants of it that have been proposed in the literature can provide us with a satisfying answer to the special composition question, or so (...) we will argue. We will then go on to explore an alternative family of purely mereological rules in the vicinity of Weak Unrestricted Composition, Cardinal Composition: A plurality of pairwise non-overlapping objects composes an object iff the objects in the plurality are of cardinality smaller than $$\kappa $$ κ. As we will show, all the instances for infinite $$\kappa $$ κ s determine fusion and are compatible with junk, and every instance for a $$\kappa > \aleph _0$$ κ > ℵ 0 is furthermore compatible with gunk and dense chains of parthood. (shrink)

This paper develops the metaphysical hypothesis that there are irreducibly collective pluralities, pluralities of objects that do not have a singular object among them. A way to formulate this hypothesis using plural quantification will be proposed and the coherence of irreducibly collective existence will be defended. Furthermore, irreducibly collective existence will be shown to allow for bottomless scenarios that do not involve things standing in relations of parthood. This will create logical space for an anti-atomistic form of mereological nihilism.

What ideas of morality and ethics existed under National Socialism? This annotated volume of sources presents for the first time a biographically contextualized selection of texts by academic moral philosophers who distinguished themselves particularly during the "Third Reich". The examination of their ideologues helps to better understand the connection between normative self-understanding and the crimes of National Socialism. In addition, the book enables a differentiated view of the development of moral philosophy after 1945.

The article endeavours to compare the reflections on the Shoah of two of the most celebrated intellectuals of Jewish origin of the 20th century, namely the German philosopher Hans Jonas and the Soviet writer Vasily Grossman. Both Jonas’ essay on The Concept of God after Auschwitz and Grossman’s novels and reports, such as The Hell of Treblinka, Life and Fate, and The Sistine Madonna, are characterised by a thorough enquiry into the ambivalence of the human condition, that tries (...) to shed some light on the disturbing abyss of Auschwitz and the Shoah. Although neither Jonas nor Grossman considered themselves as religious believers, thanks to the Shoah they recollected their Jewish roots and developed peculiar and innovative thoughts on the meaning and vulnerability of life, human freedom, immortality, and God. The article endeavours to highlight the main similarities and differences between these two authors, who tackled the issue of thinking after Auschwitz. (shrink)

The article deals with present day challenges related to the employ of technology in order to reduce the exposition of the human being to the risks and vulnerability of his or her existential condition. According to certain transhumanist and posthumanist thinkers, as well as some supporters of human enhancement, essential features of the human being, such as vulnerability and mortality, ought to be thoroughly overcome. The aim of this article is twofold: on the one hand, we wish to carry out (...) an enquiry into the ontological and ethical thinking of Hans Jonas, who was among the first to address these very issues with great critical insight; on the other hand, we endeavour to highlight the relevance of Jonas’ reflections to current challenges related to bioscience and biotechnological progress. In this regard, we believe that the transcendent and metaphysical relevance of the «image of man» introduced by Jonas is of paramount importance to understand his criticism against those attempts to ameliorate the human being by endangering his or her essence. (shrink)

In lieu of an abstract, here is a brief excerpt of the content:Spinoza and the Theory of Organism HANS JONAS I CARTESIANDUALISMlanded speculation on the nature of life in an impasse: intelligible as, on principles of mechanics, the correlation of structure and function became within the res extensa, that of structure-plus-function with feeling or experience (modes of the res cogitans) was lost in the bifurcation, and thereby the fact of life itself became unintelligible at the same time that the (...) explanation of its bodily performance seemed to be assured. The impasse became manifest in Occasionalism : its tour de force of an extraneous, divine "synchronization" of the outer and the inner world (the latter denied to animals) not only suffered from its extreme artificiality, the common failing of such ad hoc constructions, but even at so high a cost failed to accomplish its theoretical purpose by its own terms. For the animal machine, like any machine, raises beyond the question of the "how" that of the "what for" of its functioning---of the purpose for which it had thus been constructed by its maker.1 Its performance, however devoid of immanent teleology, must serve an end, and that end must be someone's end. This end may (directly) be itself, as indeed Descartes had implied when declaring self-preservation to be the effect of the functioning of the organic automaton. In that case the existence as such of the machine would be its end--either terminally, or in turn to benefit something else. In the former case, the machine would have to be more than a machine, for a mere machine cannot enioy its existence. But since, by the rigorous conception of the res extensa, it cannot be more than a machine, its function and/or existence must serve something other than itself. Automata in Descartes ' time were mainly for entertainment (rather than work). But the raison d'etre of the living kingdom could not well be seen in God's indulging his mechanical abilities or in the amusement of celestial spectators--especially since mere complexity of arrangement does not create new quality and thus add something to the unrelieved sameness of the simple substratum that might enrich the spectrum of being. For quality, beyond the primitive determinations of the extended per se, is the subjective creature of sensation, the confused representation of quantity in a mind; and thus organisms cannot harbor it because as mere machines they lack mentality, and pure spirits cannot because they lack sensuality, or the privilege of confusion and thereby of illusion with its possible enjoyment. And as to their intellectual enjoyment, even that, deprived of the thrill of discovery by the same token, would pale in the contemplation of what to sufficiently large The concept of "machine," adopted for its strict confinementto efficientcause, is still a finalisticconcept,even thoughthe final cause is no longer internal to the entity, as a mode of its own operation,but external to it as antecedent design. [43] 44 HISTORY OF PHILOSOPHY intellects is nothing but the ever-repeated exemplification of the same few, elementary (and ultimately trivial) truths. There remained, then, the time-honored--Stoic as well as Christian--idea that plants and animals are for the benefit of Man. Indeed, since the existence of a living world is the necessary condition for the existence of any of its members, the self-justifying nature of at least one such member (= species) would justify the existence of the whole. In Stoicism, Man provided this end by his possession of reason, which makes him the culmination of a terrestrial scale of being that is also self-justifying throughout all its grades (the end as the best of many that are good in degrees) ; in Christianity, by his possession of an immortal soul, which makes him the sole imago Dei in creation (the end as the sole issue at stake) ; and Cartesian dualism radicalized this latter position by making man even the sole possessor of inwardness or "soul" of any kind, thus the only one of whom "end" can meaningfully be predicated as he alone can entertain ends. All other life then, the product of physical necessity, can be considered his means. However, this traditional idea, in its anthropocentric vanity never a... (shrink)

Werner Heisenberg made an important – and as yet insufficiently researched – contribution to the transformation of the modern conception of science. This transformation involved a reassessment of the status of scientific knowledge from certain to merely hypothetical – an assessment that is widely recognized today. I examine Heisenberg’s contribution in particular by taking his conception of “closed theories” as an example according to which the established physical theories have no universal and exclusive, but only a restricted validity. Firstly, (...) I characterize the historical process of hypothetization of claims to validity. Then, secondly, I reconstruct Heisenberg’s conception, as far as it can be derived from his popular writings, relating it to the process of hypothetization. Finally, I touch on the history of its reception and compare it with conceptions of science that emphasize the significance of the hypothetical for the modern theories of natural sciences. Compared to these conceptions, Heisenberg’s contribution turns out to be rather independent. (shrink)

Werner Heisenberg hat einen wichtigen, noch nicht hinreichend untersuchten Beitrag zum Wandel des neuzeitlichen Wissenschaftsverständnisses geleistet. Der Wandel führte von der Charakterisierung des wissenschaftlichen Wissens als sichere Erkenntnis zu seiner - heute weithin anerkannten - Charakterisierung als bloß hypothetische Erkenntnis. Anfänge dieses Wandlungsprozesses lassen sich im 19. Jahrhundert nachweisen (z.B. bei John Hersehel, William Whewell oder Hermann von Helmholtz). Ich möchte am Beispiel von Heisenberg der Frage nachgehen, welchen Einfluss die Begründung der Quantenmechanik, die seine Wissenschaftsauffassung prägte, auf den (...) Prozess der Relativierung von Geltungsansprüchen hatte. Meine Vermutung ist, dass eine entscheidende Rolle hierbei weniger dem Wahrscheinlichkeitsbegriff als vielmehr dem Wahrheits- und Realitätsbegriff zukam. Ich werde als erstes den historischen Prozess der Hypothetisierung von Geltungsansprüchen, zu dem ich Heisenbergs Konzeption ins Verhältnis setzen möchte, charakterisieren. Anschließend rekonstruiere ich Heisenbergs Konzeption, soweit sie sich seinen populären Reden und Aufsätzen entnehmen lässt. Als drittes werde ich ihre Wirkungsgeschichte kurz ansprechen und sie mit Wissenschaftsauffassungen vergleichen, die die Bedeutung des Hypothetischen für die modernen Theorien der Naturwissenschaften betonen. Ihnen gegenüber erweist sich Heisenbergs Beitrag als durchaus eigenständig. (shrink)

This paper questions the adequacy of the explicit cancellability test for conversational implicature as it is commonly understood. The standard way of understanding this test relies on two assumptions: first, that that one can test whether a certain content is conversationally implicated, by checking whether that content is cancellable, and second, that a cancellation is successful only if it results in a felicitous utterance. While I accept the first of these assumptions, I reject the second one. I argue that a (...) cancellation can succeed even if it results in an infelicitous utterance, and that unless we take this possibility into account we run the risk of misdiagnosing philosophically significant cases. (shrink)

This paper sets out to undermine the view that a commitment to the early modern conception of the mind as immortalized in Ryle’s metaphor of the (Cartesian) ghost in the machine and in Quine’s metaphor of the (Lockean) myth of the museum is required to articulate a defence of the sui generis character of humanistic explanations. These powerful metaphors have not only contributed to undermining the claim for methodological pluralism by caricaturizing the arguments for disunity in the sciences; they have (...) also, and more worryingly, planted red herrings that have diverted attention away from the genuine issues at stake. This paper is an exercise in removing these false clues to reveal what the claim for the autonomy of humanistic explanations really amounts to. (shrink)

In this paper, we criticize Hans Jonas’s analogy between God’s power and the operation of physical forces. We wonder why, if omnipotence had proved to be "a self-contradictory concept", does Jonas still need to invoke the occurrence of horrendous evils to support the view that "God is not all powerful". We suggest that "God’s retreating into himself in order to give room to the world, renouncing his being and divesting himself of his deity" are beautiful but inconsistent metaphors (...) of creation. Our central claim is that God’s alleged retirement, even if it were conceivable, would not the least diminish his responsibility in the occurrence of evil. (shrink)

Let intentionalism be the view that what proposition is expressed in context by a sentence containing indexicals depends on the speaker’s intentions. It has recently been argued that intentionalism makes communicative success mysterious and that there are counterexamples to the intentionalist view in the form of cases of mismatch between the intended interpretation and the intuitively correct interpretation. In this paper, I argue that these objections can be met, once we acknowledge that we may distinguish what determines the correct interpretation (...) from the evidence that is available to the audience, as well as from the standards by which we judge whether or not a given interpretation is reasonable. With these distinctions in place, we see that intentionalism does not render communicative success mysterious, and that cases of mismatch between the intended interpretation and the intuitively correct one can easily be accommodated. The distinction is also useful in treating the Humpty Dumpty problem for intentionalism, since it turns out that this can be treated as an extreme special case of mismatch. (shrink)

According to the communication desideratum (CD), a notion of semantic content must be adequately related to communication. In the recent debate on indexical reference, (CD) has been invoked in arguments against the view that intentions determine the semantic content of indexicals and demonstratives (intentionalism). In this paper, I argue that the interpretations of (CD) that these arguments rely on are questionable, and suggest an alternative interpretation, which is compatible with (strong) intentionalism. Moreover, I suggest an approach that combines elements of (...) intentionalism with other subjectivist approaches, and discuss the role of intuitions in developing and evaluating theories of indexical reference. (shrink)

During the last couple of decades, several attempts have been made to come up with a theory that can handle the various semantic, logical and philosophical problems raised by the vagueness of natural languages. One of the most influential ideas that have come into fashion in recent years is the idea that vagueness should be analysed as a form of context sensitivity. Such contextualist theories of vagueness have gained some popularity, but many philosophers have remained sceptical of the prospects of (...) finding a tenable contextualist solution to the problems of vagueness. This paper provides an introduction to the most popular contextualist accounts, and a discussion of some of the most important arguments for and against them. (shrink)

In the debate over what determines the reference of an indexical expression on a given occasion of use, we can distinguish between two generic positions. According to the first, the reference is determined by internal factors, such as the speaker’s intentions. According to the second, the reference is determined by external factors, like conventions or what a competent and attentive audience would take the reference to be. It has recently been argued that the first position is untenable, since there are (...) cases of mismatch where the intuitively correct reference differs from the one that would be determined by the relevant internal factors. The aim of this paper is to show that, contrary to this line of argument, it is the proponent of the second position that should be worried, since this position yields counterintuitive consequences regarding communicative success in cases of mismatch. (shrink)

This paper concerns how extant theorists of predictive coding conceptualize and explain possible instances of cognitive penetration. §I offers brief clarification of the predictive coding framework and relevant mechanisms, and a brief characterization of cognitive penetration and some challenges that come with defining it. §II develops more precise ways that the predictive coding framework can explain, and of course thereby allow for, genuine top-down causal effects on perceptual experience, of the kind discussed in the context of cognitive penetration. §III develops (...) these insights further with an eye towards tracking one extant criterion for cognitive penetration, namely, that the relevant cognitive effects on perception must be sufficiently direct. Throughout these discussions, we extend the analyses of the predictive coding models, as we know them. So one open question that surfaces is how much of the extended analyses are genuinely just part of the predictive coding models, or something that must be added to them in order to generate these additional explanatory benefits. In §IV, we analyze and criticize a claim made by some theorists of predictive coding, namely, that (interesting) instances of cognitive penetration tend to occur in perceptual circumstances involving substantial noise or uncertainty. It is here that our analysis is most critical. We argue that, when applied, the claim fails to explain (or perhaps even be consistent with) a large range of important and uncontroversially interesting possible cases of cognitive penetration. We conclude with a general speculation about how the recent work on the predictive mind may influence the current dialectic concerning top-down effects on perception. (shrink)

Gregor Schiemann führt allgemeinverständlich in das Denken dieses Physikers ein. Thema sind die Erfahrungen und Überlegungen, die Heisenberg zu seinen theoretischen Erkenntnissen geführt haben, die wesentlichen Inhalte dieser Erkenntnisse sowie die Konsequenzen, die er daraus für die Geschichte der Physik und das wissenschaftliche Weltbild gezogen hat. Heisenbergs Vorstellungswelt durchzieht durch ein Spannungsverhältnis, das heute noch das Denken vieler Wissenschaftlerinnen und Wissenschaftler bewegt. Er ist um ein umfassendes Verständnis der Naturprozesse bemüht, zugleich aber von der Berechenbarkeit und Beherrschbarkeit von Phänomenen auch (...) dann schon fasziniert, wenn die zugrunde liegenden Prozesse erst teilweise verstanden sind. Aus der Geschichte der Physik zieht er die wirkungsreiche Lehre, daß sich die naturwissenschaftliche Erkenntnis nicht kontinuierlich, sondern sprunghaft in Form von Revolutionen entwickelt. Die Reichweite des physikalischen Wissens begrenzt er in einer Schichtentheorie der Welt, nach der die komplexen Phänomene des Lebens nicht allein durch die Wechselwirkungen zwischen ihren Bestandteilen erklärt werden können. Der zunehmenden Technisierung der Welt steht Heisenberg kritisch gegenüber. Seiner Zeit weit voraus, glaubt er, daß die Technisierung der Welt eine epochal neue Stufe erreicht habe, in der der Mensch „nur noch sich selbst“ gegenüberstehe. (shrink)

I propose a pragmatic approach to the kind of reference-shifting occurring in indexicals as used in e.g. written notes and answering machine messages. I proceed in two steps. First, I prepare the ground by showing that the arguments against such a pragmatic approach raised in the recent literature fail. Second, I take a first few steps towards implementing this approach, by sketching a pragmatic theory of reference-shifting, and showing how it can handle cases of the relevant kind. While the immediate (...) scope of the paper is restricted to indexicals and reference-shifting, and the discussion is confined to a specific range of theories and cases, the approach proposed is compatible with a fairly broad range of more or less semantically conservative theories, and many of the conclusions drawn are significant for the evaluation of pragmatic explanations in philosophy more generally. The overall goal is to offer a new perspective on the issues under discussion, and to prompt philosophers to reconsider some of the established methods by which pragmatic explanations are evaluated. (shrink)

The Information Artifact Ontology (IAO) was created to serve as a domain‐neutral resource for the representation of types of information content entities (ICEs) such as documents, data‐bases, and digital im‐ages. We identify a series of problems with the current version of the IAO and suggest solutions designed to advance our understanding of the relations between ICEs and associated cognitive representations in the minds of human subjects. This requires embedding IAO in a larger framework of ontologies, including most importantly the Mental (...) Func‐tioning Ontology (MFO). It also requires a careful treatment of the aboutness relations between ICEs and associated cognitive representa‐tions and their targets in reality, which implies in turn a new treatment of the relation of truthmaking. (shrink)

Particular persons have claims against being made worse off than they could have been. The literature, however, has focused primarily on only two-option cases; yet, these cases fail to capture all of the morally relevant factors, especially when a person’s existence is in question. This paper explores how to assess claims in multiple-option choice sets. We scrutinize the only extant proposal, offered by Michael Otsuka, which we call the Weakening View. In light of its problems, we develop an alternative: the (...) Combining View. The Weakening View holds that a person’s claim against a loss of well-being relative to one distribution is weakened by the availability of further alternatives relative to which the person gains well-being. By contrast, our view holds that a person has an overall claim for or against a certain distribution relative to the whole option set, where overall claims are second-order functions of the different pairwise claims. Finally, we defend the Combining View by exploring its implications for the impact of a person’s possible non-existence on their overall claims, and we develop a proposal for how the number of distributions relative to which a person gains or loses welfare influences the strength of their overall claims. (shrink)

The goal of referent tracking is to create an ever-growing pool of data relating to the entities existing in concrete spatiotemporal reality. In the context of Electronic Healthcare Records (EHRs) the relevant concrete entities are not only particular patients but also their parts, diseases, therapies, lesions, and so forth, insofar as these are salient to diagnosis and treatment. Within a referent tracking system, all such entities are referred to directly and explicitly, something which cannot be achieved when familiar concept-based systems (...) are used in what is called “clinical coding”. In this paper we describe the components of a referent tracking system in an informal way and we outline the procedures that would have to be followed by healthcare personnel in using such a system. We argue that the referent tracking paradigm can be introduced with only minor – though nevertheless ontologically important – technical changes to existing EHR infrastructures, but that it will require a radically different mindset on the part of those involved in clinical coding and terminology development from that which has prevailed hitherto. (shrink)

While classifications of mental disorders have existed for over one hundred years, it still remains unspecified what terms such as 'mental disorder', 'disease' and 'illness' might actually denote. While ontologies have been called in aid to address this shortfall since the GALEN project of the early 1990s, most attempts thus far have sought to provide a formal description of the structure of some pre-existing terminology or classification, rather than of the corresponding structures and processes on the side of the patient. (...) We here present a view of mental disease that is based on ontological realism and which follows the principles embodied in Basic Formal Ontology and in the application of BFO in the Ontology of General Medical Science. We analyzed statements about what counts as a mental disease provided in the research agenda for the DSM-V, and in Pies' model. The results were used to assess whether the representational units of BFO and OGMS were adequate as foundations for a formal representation of the entities in reality that these statements attempt to describe. We then analyzed the representational units specific to mental disease and provided corresponding definitions. Our key contributions lie in the identification of confusions and conflations in the existing terminology of mental disease and in providing what we believe is a framework for the sort of clear and unambiguous reference to entities on the side of the patient that is needed in order to avoid these confusions in the future. (shrink)

The goal of this paper is to present a new reconstruction of Aristotle's assertoric logic as he develops it in Prior Analytics, A1-7. This reconstruction will be much closer to Aristotle's original...

Scientific realism is typically associated with metaphysics. One current incarnation of such an association concerns the requirement of a metaphysical characterization of the entities one is being a realist about. This is sometimes called “Chakravartty’s Challenge”, and codifies the claim that without a metaphysical characterization, one does not have a clear picture of the realistic commitments one is engaged with. The required connection between metaphysics and science naturally raises the question of whether such a demand is appropriately fulfilled, and how (...) metaphysics engages with science in order to produce what is called “scientific metaphysics”. Here, we map some of the options available in the literature, generating a conceptual spectrum according to how each view approximates science and metaphysics. This is done with the purpose of enlightening the current debate on the possibility of epistemic warrant that science could grant to such a metaphysics, and how different positions differently address the thorny issue concerning such a warrant. (shrink)

We performed a qualitative analysis of the Thesaurus in order to assess its conformity with principles of good practice in terminology and ontology design. We used both the on-line browsable version of the Thesaurus and its OWL-representation (version 04.08b, released on August 2, 2004), measuring each in light of the requirements put forward in relevant ISO terminology standards and in light of ontological principles advanced in the recent literature. Version 04.08b of the NCI Thesaurus suffers from the same broad range (...) of problems that have been observed in other biomedical terminologies. For its further development, we recommend the use of a more principled approach that allows the Thesaurus to be tested not just for internal consistency but also for its degree of correspondence to that part of reality which it is designed to represent. (shrink)

Quality assurance in large terminologies is a difficult issue. We present two algorithms that can help terminology developers and users to identify potential mistakes. We demon­strate the methodology by outlining the different types of mistakes that are found when the algorithms are applied to SNOMED-CT. On the basis of the results, we argue that both formal logical and linguistic tools should be used in the development and quality-assurance process of large terminologies.

According to extension-shifting theories of vagueness, the extensions of vague predicates have sharp boundaries, which shift as a function of certain psychological factors. Such theories have been claimed to provide an attractive explanation of the appeal of soritical reasoning. I challenge this claim: the demand for such an explanation need not constrain the semantics of vague predicates at all.

Ontology is currently perceived as the solution of first resort for all problems related to biomedical terminology, and the use of description logics is seen as a minimal requirement on adequate ontology-based systems. Contrary to common conceptions, however, description logics alone are not able to prevent incorrect representations; this is because they do not come with a theory indicating what is computed by using them, just as classical arithmetic does not tell us anything about the entities that are added or (...) subtracted. In this paper we shall show that ontology is indeed an essential part of any solution to the problems of medical terminology – but only if it is understood in the right sort of way. Ontological engineering, we shall argue, should in every case go hand in hand with a sound ontological theory. (shrink)

PURPOSE—A substantial fraction of the observations made by clinicians and entered into patient records are expressed by means of negation or by using terms which contain negative qualifiers (as in “absence of pulse” or “surgical procedure not performed”). This seems at first sight to present problems for ontologies, terminologies and data repositories that adhere to a realist view and thus reject any reference to putative non-existing entities. Basic Formal Ontology (BFO) and Referent Tracking (RT) are examples of such paradigms. The (...) purpose of the research here described was to test a proposal to capture negative findings in electronic health record systems based on BFO and RT. METHODS—We analysed a series of negative findings encountered in 748 sentences taken from 41 patient charts. We classified the phenomena described in terms of the various top-level categories and relations defined in BFO, taking into account the role of negation in the corresponding descriptions. We also studied terms from SNOMED-CT containing one or other form of negation. We then explored ways to represent the described phenomena by means of the types of representational units available to realist ontologies such as BFO. RESULTS—We introduced a new family of ‘lacks’ relations into the OBO Relation Ontology. The relation lacks_part, for example, defined in terms of the positive relation part_of, holds between a particular p and a universal U when p has no instance of U as part. Since p and U both exist, assertions involving ‘lacks_part’ and its cognates meet the requirements of positivity. CONCLUSION—By expanding the OBO Relation Ontology, we were able to accommodate nearly all occurrences of negative findings in the sample studied. (shrink)

Based on the Ontology for General Medical Science, we propose definitions for biomarkers of various types of. These definitions provide not only a complete formal representation of what biomarkers are according to the Institute of Medicine (IOM), but also remove the ambiguities and inconsistencies encountered in the documentation provided by the IOM.

We present the details of a methodology for quality assurance in large medical terminologies and describe three algorithms that can help terminology developers and users to identify potential mistakes. The methodology is based in part on linguistic criteria and in part on logical and ontological principles governing sound classifications. We conclude by outlining the results of applying the methodology in the form of a taxonomy different types of errors and potential errors detected in SNOMED-CT.

An attempt to achieve an overall interpretation of the thinking of Hans Jonas by utilising the notions of life, ambivalence and responsibility.

Electronic Health Records (EHRs) are organized around two kinds of statements: those reporting observations made, and those reporting acts performed. In neither case does the record involve any direct reference to what such statements are actually about. They record not: what is happening on the side of the patient, but rather: what is said about what is happening. While the need for a unique patient identifier is generally recognized, we argue that we should now move to an EHR regime in (...) which all clinically salient particulars – from the concrete disorder on the side of the patient and the body parts in which it occurs to the concrete treatments given – should be uniquely identified. This will allow us to achieve interoperability among different systems of records at the level where it really matters: in regard to what is happening in the real world. It will also allow us to keep track of particular disorders and of the effects of particular treatments in a precise and unambiguous way. We discuss the ontological and epistemological aspects of our claim and describe a scenario for implementation within EHR systems. (shrink)

Digital Rights Management (DRM) covers the description, identification, trading, protection, monitoring and tracking of all forms of rights over both tangible and intangible assets. The Digital Object Identifier (DOI) system provides a framework for the persistent identification of entities involved in this domain. Although the system has been very well designed to manage object identifiers, some important questions relating to the creation and assignment of identifiers are left open. The paradigm of a Referent Tracking System (RTS) recently advanced in the (...) healthcare and life sciences environment is able to fill these gaps. This is demonstrated by pointing out inconsistencies in the existing DOI models and by showing how they can be corrected using an RTS. (shrink)

The paradigm of referent tracking is based on a realist presupposition which rejects so-called negative entities (congenital absent nipple, and the like) as spurious. How, then, can a referent tracking-based Electronic Health Record deal with what are standardly called ‘negative findings’? To answer this question we carried out an analysis of some 748 sentences drawn from patient charts and containing some form of negation. Our analysis shows that to deal with these sentences we need to introduce a new ontological relationship (...) between a particular and a universal, which holds when no instance of the universal has a specific qualified ontological relation with the particular. This relation is found to be able to accommodate nearly all occurrences of negative findings in the examined sample, in ways which involve no reference to negative entities. (shrink)

If SNOMED CT is to serve as a biomedical reference terminology, then steps must be taken to ensure comparability of information formulated using successive versions. New releases are therefore shipped with a history mechanism. We assessed the adequacy of this mechanism for its treatment of the distinction between changes occurring on the side of entities in reality and changes in our understanding thereof. We found that these two types are only partially distinguished and that a more detailed study is required (...) to propose clear recommendations for enhancement along at least the following lines: (1) explicit representation of the provenance of a class; (2) separation of the time-period during which a component is stated valid in SNOMED CT from the period it is (or has been) valid in reality, and (3) redesign of the historical relationships table to give users better assistance for recovery in case of introduced mistakes. (shrink)

Agent relativists about vagueness (henceforth ‘agent relativists’) hold that whether or not an object x falls in the extension of a vague predicate ‘P’ at a time t depends on the judgemental dispositions of a particular competent agent at t. My aim in this paper is to critically examine arguments that purport to support agent relativism by appealing to data from forced-march Sorites experiments. The most simple and direct versions of such forced-march Sorites arguments rest on the following (implicit) premise: (...) If competent speakers' judgements vary in a certain way, then the extensions of ‘P’ as used by these speakers must vary in the same way. This premise is in need of independent support, since otherwise opponents of agent relativism can simply reject it. In this paper, I focus on the idea that one cannot plausibly reject this premise, as that would commit one to implausible claims about linguistic competence. Against this, I argue that one can accommodate the data from forced-march Sorites experiments in a way that is compatible with a plausible picture of linguistic competence, without going agent relativist. Thus, there is reason to be sceptical of the idea that such data paired with considerations about linguistic competence can be invoked in order to lend any solid support to agent relativism. Forced-march Sorites arguments of this kind can, and should be, resisted. (shrink)

The goal of the OBO (Open Biomedical Ontologies) Foundry initiative is to create and maintain an evolving collection of non-overlapping interoperable ontologies that will offer unambiguous representations of the types of entities in biological and biomedical reality. These ontologies are designed to serve non-redundant annotation of data and scientific text. To achieve these ends, the Foundry imposes strict requirements upon the ontologies eligible for inclusion. While these requirements are not met by most existing biomedical terminologies, the latter may nonetheless support (...) the Foundry’s goal of consistent and non-redundant annotation if appropriate mappings of data annotated with their aid can be achieved. To construct such mappings in reliable fashion, however, it is necessary to analyze terminological resources from an ontologically realistic perspective in such a way as to identify the exact import of the ‘concepts’ and associated terms which they contain. We propose a framework for such analysis that is designed to maximize the degree to which legacy terminologies and the data coded with their aid can be successfully used for information-driven clinical and translational research. (shrink)

The book focuses on the thinking of the philosopher of Jewish origins, Hans Jonas (1903-1993), and precisely on his “philosophical biology”. The overall thesis is that this topic, which occupies the second stage of his thinking, is coherent with the previous phase (which focused on ancient Gnosticism), as well as with the following (which was dedicated to the ethics of responsibility). The main evidence supporting this thesis is the key notion of “ontological revolution”, the development of which I try (...) to analyse in Jonas’ published and unpublished writings. This is the first innovative feature of the research. The second is my attempt to compare Jonas’ ideas of life and organism with the reflections of thinkers such as Aristotle, Spinoza, and Whitehead. (shrink)

Referent tracking (RT) is a new paradigm, based on unique identification, for representing and keeping track of particulars. It was first introduced to support the entry and retrieval of data in electronic health records (EHRs). Its purpose is to avoid the ambiguity that arises when statements in an EHR refer to disorders or other entities on the side of the patient exclusively by means of compound descriptions utilizing general terms such as ‘pimple on nose’ or ‘small left breast tumor’. In (...) this paper, we describe the theoretical foundations of this paradigm and show how it is being applied to the solution of analogous problems of ambiguous identification in the fields of digital rights management, corporate memories and decision algorithms. (shrink)

The German philosopher Martin Heidegger’s seminal essay “Building, Dwelling, Thinking”, published in 1954, is one of the texts which has had most influence on architectural thinking in the second half of 20th and early 21st century. What much of modern and postmodern architectural thinking extracts from Heidegger’s text and revolves around is the understanding of building and dwelling as more or less abstract forms of being without taking into account the people inhabiting space. In these traditions little has been said (...) about what the Danish architect Jørn Utzon adds to the term “being” and announces as the most important aspect of architecture: Well-being understood as human well-being. The present paper means to re-interpret Heidegger’s text critically in order to rethink dwelling and building within an architectural context, presenting Jørn Utzon’s work and thinking as a lifelong search for the architecture of well-being. (shrink)

Definitive diagnosis of malaria requires the demonstration through laboratory tests of the presence within the patient of malaria parasites or their components. Since malaria parasites can be present even in the absence of malaria manifestations, and since symptoms of malaria can be manifested even in the absence of malaria parasites, malaria diagnosis raises important issues for the adequate understanding of disease, etiology and diagnosis. One approach to the resolution of these issues adopts a realist view, according to which the needed (...) clarifications will be derived from a careful representation of the entities on the side of the patient which form the ultimate truthmakers for clinical statements. We here address a challenge to this realist approach relating to the diagnosis of malaria, and show how this challenge can be resolved by appeal to Basic Formal Ontology (BFO) and to the Ontology for General Medical Science (OGMS) constructed in its terms. (shrink)

The main goal of this paper is to work out Quine's account of explication. Quine does not provide a general account, but considers a paradigmatic example which does not fit other examples he claims to be explications. Besides working out Quine's account of explication and explaining this tension, I show how it connects to other notions such as paraphrase and ontological commitment. Furthermore, I relate Quinean explication to Carnap's conception and argue that Quinean explication is much narrower because its main (...) purpose is to be a criterion of theory choice. (shrink)

We articulate a distinction between ontology, understood as involving existence questions, and metaphysics, understood as either providing for metaphysical profiles of entities or else as dealing with fundamentality and/or grounding and dependence questions. The distinction, we argue, allows a better understanding of the roles of metaontology and metametaphysics when it comes to discussing the relations between ontology and science on the one hand, and metaphysics and science on the other. We argue that while ontology, as understood in this paper, may (...) have reasonable perspectives for naturalization, given its relation to science, the same cannot be said for metaphysics, given that it is typically understood as an additional theoretical layer over science, not participating in the scientific investigation. That may result either in skepticism over metaphysics, or else on accepting that metaphysics is an autonomous branch of investigation, depending on one’s concern for metaphysics. (shrink)

For corporate memory and enterprise ontology systems to be maximally useful, they must be freed from certain barriers placed around them by traditional knowledge management paradigms. This means, above all, that they must mirror more faithfully those portions of reality which are salient to the workings of the enterprise, including the changes that occur with the passage of time. The purpose of this chapter is to demonstrate how theories based on philosophical realism can contribute to this objective. We discuss how (...) realism-based ontologies (capturing what is generic) combined with referent tracking (capturing what is specific) can play a key role in building the robust and useful corporate memories of the future. (shrink)