Results for 'Lindsay Cowell'

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  1. Infectious Disease Ontology.Lindsay Grey Cowell & Barry Smith - 2009 - In Infectious Disease Informatics. New York: Springer New York. pp. 373-395.
    Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and (...)
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  2. The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2021 - Journal of Biomedical Semantics 12 (13).
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...)
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  3. VO: Vaccine Ontology.Yongqun He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall, Barry Smith & Others - 2009 - In ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo:
    Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine (...)
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  4. Towards an Ontological Representation of Resistance: The Case of MRSA.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2011 - Journal of Biomedical Informatics 44 (1):35-41.
    This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. The treatments of resistance terms in various existing ontologies are examined and found to be either overly narrow, internally inconsistent, or otherwise problematic. We propose a more coherent characterization of resistance in terms of what we shall call blocking dispositions, which are collections of mutually coordinated dispositions which are of such a sort that they cannot undergo simultaneous realization within a single (...)
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  5. Dispositions and the Infectious Disease Ontology.Albert Goldfain, Barry Smith & Lindsay Cowell - 2010 - In Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS). IOS Press. pp. 400-413.
    This paper addresses the use of dispositions in the Infectious Disease Ontology (IDO). IDO is an ontology constructed according to the principles of the Open Biomedical Ontology (OBO) Foundry and uses the Basic Formal Ontology (BFO) as an upper ontology. After providing a brief introduction to disposition types in BFO and IDO, we discuss three general techniques for representing combinations of dispositions under the headings blocking dispositions, complementary dispositions, and collective dispositions. Motivating examples for each combination of dispositions is given (...)
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  6. Constructing a lattice of Infectious Disease Ontologies from a Staphylococcus aureus isolate repository.Albert Goldfain, Lindsay G. Cowell & Barry Smith - 2012 - In Goldfain Albert, Cowell Lindsay G. & Smith Barry (eds.), Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).
    A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi‐automatically generate a set of application ontologies for specific subfamilies of Sa‐related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO‐Core and IDO‐extension reference ontologies. We show how this lattice can be used to define a strategy for the construction of a new (...)
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  7. Clonal complexes in biomedical ontologies.Albert Goldfain, Lindsay Cowell & Barry Smith - 2009 - In ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. pp. 168.
    An accurate classification of bacteria is essential for the proper identification of patient infections and subsequent treatment decisions. Multi-Locus Sequence Typing (MLST) is a genetic technique for bacterial classification. MLST classifications are used to cluster bacteria into clonal complexes. Importantly, clonal complexes can serve as a biological species concept for bacteria, facilitating an otherwise difficult taxonomic classification. In this paper, we argue for the inclusion of terms relating to clonal complexes in biomedical ontologies.
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  8. Ontological representation of CDC Active Bacterial Core Surveillance Case Reports.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2014 - Proceedings of the Fifth International Conference on Biomedical Ontology 1327:74-77.
    The Center for Disease Control and Prevention’s Active Bacterial Core Surveillance (CDC ABCs) Program is a collaborative effort betweeen the CDC, state health departments, laboratories, and universities to track invasive bacterial pathogens of particular importance to public health [1]. The year-end surveillance reports produced by this program help to shape public policy and coordinate responses to emerging infectious diseases over time. The ABCs case report form (CRF) data represents an excellent opportunity for data reuse beyond the original surveillance purposes.
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  9. An improved ontological representation of dendritic cells as a paradigm for all cell types.Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Liebermann, Chris Mungall, Richard H. Scheuermann, Barry Smith & Lindsay Cowell - 2009 - BMC Bioinformatics 10 (1):70.
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  10.  74
    Coordinating virus research: The Virus Infectious Disease Ontology.John Beverley, Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He, Regina Hurley, Eric Merrell, Richard H. Scheuermann & Barry Smith - 2024 - PLoS ONE 1.
    The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...)
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  11. An improved ontological representation of dendritic cells as a paradigm for all cell types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  12. Coordinating Coronavirus Research: The COVID-19 Infectious Disease Ontology.John Beverley, Shane Babcock, Barry Smith, Yongqun He, Eric Merrell, Lindsay Cowell, Regina Hurley & Sebastian Duesing - 2022 - Proceedings of the International Conference on Biomedical Ontologies.
    The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Ontologies – structured, controlled, vocabularies – are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the virus research domain, following the principles of the Open Biological and Biomedical Ontology (OBO) Foundry and drawing on the resources of the Infectious Disease Ontology (IDO) Core. We report the development of the Virus Infectious (...)
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  13. The Curious Case of Uncurious Creation.Lindsay Brainard - forthcoming - Inquiry: An Interdisciplinary Journal of Philosophy.
    This paper seeks to answer the question: Can contemporary forms of artificial intelligence be creative? To answer this question, I consider three conditions that are commonly taken to be necessary for creativity. These are novelty, value, and agency. I argue that while contemporary AI models may have a claim to novelty and value, they cannot satisfy the kind of agency condition required for creativity. From this discussion, a new condition for creativity emerges. Creativity requires curiosity, a motivation to pursue epistemic (...)
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  14. In defense of doxastic blame.Lindsay Rettler - 2018 - Synthese 195 (5):2205-2226.
    In this paper I articulate a view of doxastic control that helps defend the legitimacy of our practice of blaming people for their beliefs. I distinguish between three types of doxastic control: intention-based, reason-based, and influence-based. First I argue that, although we lack direct intention-based control over our beliefs, such control is not necessary for legitimate doxastic blame. Second, I suggest that we distinguish two types of reason-responsiveness: sensitivity to reasons and appreciation of reasons. I argue that while both capacities (...)
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  15. Faith, Belief, and Control.Lindsay Rettler - 2018 - American Philosophical Quarterly 55 (1):95-109.
    In this paper, I solve a puzzle generated by three conflicting claims about the relationship between faith, belief, and control: according to the Identity Thesis, faith is a type of belief, and according to Fideistic Voluntarism, we sometimes have control over whether or not we have faith, but according to Doxastic Involuntarism, we never have control over what we believe. To solve the puzzle, I argue that the Identity Thesis is true, but that either Fideistic Voluntarism or Doxastic Voluntarism is (...)
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  16. Epistemic Duty and Implicit Bias.Lindsay Rettler & Bradley Rettler - 2020 - In Kevin McCain & Scott Stapleford (eds.), Epistemic Duties: New Arguments, New Angles. Routledge. pp. 125-145.
    In this chapter, we explore whether agents have an epistemic duty to eradicate implicit bias. Recent research shows that implicit biases are widespread and they have a wide variety of epistemic effects on our doxastic attitudes. First, we offer some examples and features of implicit biases. Second, we clarify what it means to have an epistemic duty, and discuss the kind of epistemic duties we might have regarding implicit bias. Third, we argue that we have an epistemic duty to eradicate (...)
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  17. The defeat of heartbreak: problems and solutions for Stump's view of the problem of evil concerning desires of the heart.Lindsay K. Cleveland & W. Scott Cleveland - 2016 - Religious Studies 52 (1):1-23.
    Eleonore Stump insightfully develops Aquinas’s theodicy to account for a significant source of human suffering, namely the undermining of desires of the heart. Stump argues that what justifies God in allowing such suffering are benefits made available to the sufferer through her suffering that can defeat the suffering by contributing to the fulfillment of her heart’s desires. We summarize Stump’s arguments for why such suffering requires defeat and how it is defeated. We identify three problems with Stump’s account of how (...)
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  18.  99
    Causal Connections Between Anorexia Nervosa and Delusional Beliefs.Kyle De Young & Lindsay Rettler - forthcoming - Review of Philosophy and Psychology:1-22.
    Numerous studies of the beliefs of people with anorexia nervosa (AN) suggest that a subset of such individuals may experience delusions. We first describe what makes a belief delusional and conclude that such characteristics can be appropriately applied to some beliefs of people with AN. Next, we outline how delusional beliefs may relate to the broader psychopathological process in AN, including: (1) they may be epiphenomenal; (2) they may be an initial partial cause of AN; (3) they may be caused (...)
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  19. Psychopathy, adaptation, and disorder.Daniel Brian Krupp, Lindsay A. Sewall, Martin L. Lalumière, Craig Sheriff & Grant T. Harris - 2013 - Frontiers in Psychology 4:1-5.
    In a recent study, we found a negative association between psychopathy and violence against genetic relatives. We interpreted this result as a form of nepotism and argued that it failed to support the hypothesis that psychopathy is a mental disorder, suggesting instead that it supports the hypothesis that psychopathy is an evolved life history strategy. This interpretation and subsequent arguments have been challenged in a number of ways. Here, we identify several misunderstandings regarding the harmful dysfunction definition of mental disorder (...)
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  20. "Macrocosm/Microcosm in Doric Thought".W. Lindsay Wheeler - 2011 - Self-Published.
    This article is about a very important metaphysical concept, macrocosm/microcosm and its appearance in Doric thought which in turn influenced Socrates and Plato. But since this concept has been gainsaid and negated in recent articles and distorted by some ancient thinkers it will be necessary to conduct reconstructive surgery to restore it to its pristine condition. Hopefully, this paper will illustrate how metaphysics is done with the use of the Mind's eye, in the reading of reality that was part and (...)
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  21. A reply to Peter Boghsonnian and James Lindsay's, ‘What comes after postmodernism?’.Russell Webster - 2019 - Educational Philosophy and Theory 51 (7):679-680.
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  22. BELLE- LORD MANSFIELD'S GREAT-NIECE.Sally Ramage - forthcoming - Criminal Law News (85).
    This is the review of a book by Paula Byrne on Lord Mansfield's great-niece, Dido, whom he raised as his own daughter. Lord Mansfield was the Lord Chief Justice of England in the Eighteenth Century. The child was brought to him as an infant and grew up to become what we would today term his paralegal clerk in his Library at Kenwood House. His great-niece was the child of a black slave and his sister's son, Sir John Lindsay. This (...)
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  23. Extended Synthesis: Theory Expansion or Alternative?Gerd B. Müller & Massimo Pigliucci - 2010 - Biological Theory 5 (3):275-276.
    A response to Lindsay Craig's essay, The So-Called Extended Synthesis and Population Genetics.
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  24. The End of (Human) Life as We Know It.Christina Van Dyke - 2012 - Modern Schoolman 89 (3-4):243-257.
    Is the being in an irreversible persistent vegetative state as the result of a horrible accident numerically identical to the human person, Lindsay, who existed before the accident? Many proponents of Thomistic metaphysics have argued that Aquinas’s answer to this question must be “yes.” In particular, it seems that Aquinas’s commitment to both Aristotelian hylomorphism and the unity of substantial form (viz., that each body/soul composite possesses one and only one substantial form) entails the position that the human person (...)
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  25.  73
    Percy W. Bridgman e a análise do Operacionalismo em 1953 (3rd edition).Douglas Antonio Bassani - 2023 - Pensando - Revista de Filosofia 14:33-43.
    Este artigo procura analisar algumas das principais ideias abordadas no encontro anual promovido pela “American Association for the Advancement of Sciencie” em Boston (EUA) em 1953. Parte do encontro foi para abordar sobre o estado atual da concepção operacional de significado desenvolvida por Percy W. Bridgman a partir de 1927. As principais ideias tratadas no encontro foram posteriormente publicadas pela revista “The Scientific Montly” em 1954-1955 e republicadas no capítulo 2 do livro “The validation of scientific theories” (1961), editado por (...)
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  26. Fisiologia Clínica do Ciclo Estral de Vacas Leiteiras: Desenvolvimento Folicular, Corpo Lúteo e Etapas do Estro.Emanuel Isaque Cordeiro da Silva - manuscript
    REPRODUÇÃO ANIMAL: O CICLO ESTRAL DE BOVINOS LEITEIROS – Desenvolvimento Folicular, Corpo Lúteo e Etapas do Estro ANIMAL REPRODUCTION: THE OESTROUS CYCLE OF DAIRY BOVINES -Follicular Development, Corpus Luteum and Stages of Estrus Apoio: Emanuel Isaque Cordeiro da Silva Departamento de Zootecnia da UFRPE E-mail: [email protected] WhatsApp: (82)98143-8399 FISIOLOGIA CLÍNICA DO CICLO ESTRAL DE BOVINOS LEITEIROS 1. RESUMO A fêmea bovina apresenta ciclos estrais em intervalos de 19 a 23 dias e estes só são interrompidos durante a gestação ou devido (...)
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  27. Fisiologia da Reprodução Animal: Ovulação, Controle e Sincronização do Cio.Emanuel Isaque Cordeiro da Silva - manuscript
    UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO DEPARTAMENTO DE ZOOTECNIA – 50 ANOS EMANUEL ISAQUE CORDEIRO DA SILVA REPRODUÇÃO ANIMAL: OVULAÇÃO, CONTROLE E SINCRONIZAÇÃO -/- REPRODUÇÃO ANIMAL: OVULAÇÃO, CONTROLE E SINCRONIZAÇÃO DO CICLO ESTRAL -/- ANIMAL REPRODUCTION: OVULATION, CONTROL AND SYNCHRONIZATION OF THE ESTRAL CYCLE -/- Autor: Emanuel Isaque Cordeiro da Silva – IFPE-BJ/CAP-UFPE/EEFCC-BJ/UFRPE 1. INTRODUÇÃO As fêmeas dos animais domésticos possuem em seus ovários, desde praticamente o nascimento, a dotação completa de gametas dos quais vão dispor para o resto de sua (...)
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  28. DR. [REVIEW]Sally Ramage - 2015 - Current Criminal Law 7 (4):1-14.
    Dido Belle was the illegitimate daughter of Captain Lindsay, the aristocratic nephew of William Murray, Scottish by birth and Lord Chief Justice of England for many decades. The book tells the story of Dido's life in Lord Mansfield homes, from the time her father begged Lord and Lady Mansfield to be wards of the child Dido to the death at age 88 of Lord Mansfield, mainly cared for by Dido and to Dido's young death at age 43. It also (...)
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  29. Book review of: C. Dyble, Taming Leviathan: Waging a War of Ideas Around the World. [REVIEW]Gary James Jason - 2008 - Liberty (December):46-47, 50..
    This essay is my review of Colleen Dyble’s book, Taming Leviathan: Waging a War of Ideas around the World. Dyble is affiliated with the legendary classical liberal British think tank, the Institute of Economic Affairs. Her anthology is a collection of essays by people around the world who have been involved with similar free-market think tanks in countries with historically statist economic systems. These writers include Greg Lindsay, founder of the Center for Independent Studies in Australia; Margaret Tse, of (...)
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  30.  6
    METODOLOGIA E MANEJO REPRODUTIVO APLICADO EM BOVINOS LEITEIROS.Bruna Cardoso Lemes, Gabriel Destefani de Souza, Jaqueline Aparecida Sousa Pereira, Jéssica Elizei Dande, Marcelo de Figueiredo Filiardi Filho, Vinícius de Moura Ribeiro Monticeli & Elizângela Guedes - 2022 - Revista Agroveterinária Do Sul de Minas 4 (1):153-172.
    Resumo: Sabe-se que a pecuária é uma parcela do agronegócio que move a economia do país, e incluso está a produção leiteira, que tem, a cada ano seu desenvolvimento elevado, de forma em que é priorizado a eficiência no aumento de sua produção, com o objetivo de suprir a demanda, e a maior rentabilidade do produtor. Diante disso, medidas de manejo reprodutivo e alimentar são adotadas, sendo estas capazes de elevar a produtividade com o menor custo possível. O trabalho objetivou (...)
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