每本书都能有自己的一个名字，这实在是一件有趣且意味深长的事情。 这本书的名字，《存在或上帝 —— 对西方意识形态的建设性批判》，虽然长了点，但同样不失其有趣与意味深长。 书名中所谓的“西方意识形态”，指的是起源于西方世界，贯穿于西方历史，激发并引导了神学、哲学、数学、逻辑、艺术、科学、心理、经济、社会、环境、政治和军事等不同方面的理论和实践活动在西方的出现和发展，并造 就了西方人生活现状的那些最根本的理想或信念。 “对西方意识形态的批判”意味着，在本书作者看来，那些最根本的理想或信念并不完美，并不自洽，而且，不仅有必要也同样有可能变得更完美。 “对西方意识形态的建设性批判”则意味着，本书的重点并不是“批判”而是“建设”。这种建设性批判，主要涉及到两个极为重要的理想或信念的不自洽和不完美，其中一个是“存在”，另一个便是“上帝”。 至于书名中的“存在或上帝”，说的不仅是“存在”和“上帝” 的不自洽、不完美，说的不仅是使这两个概念更完美的必要性与可能性，说的不仅是使它们同一或统一的可能性与必要性，同时亦向读者提示了贯彻本书始终的那个基本方法或那条基本思路：在一切之间，有一切之存在。 无论是远在过去还是时至今日，对于许多西方人来说，“存在”与“上帝”这两个概念，既是一切问题之问题，又是一切答案之答案，不仅涉及到他们的过去，更涉及到了他们的未来。换句话说，“存在”与“上帝”所涉及到的 绝非仅仅只是人们所面对的那个世界，同样涉及到那个世界所面对的人本身，绝非仅仅只涉及到那个世界所承负着的“非我”，同样涉及到人们所承负着的那个“自我”，涉及到，我们每个人用“非我”为自己的“自我”所做的 每一件事情，涉及到了“自我”与“非我”的关系，特别是自由与必然之间的关系。 由此可见，这问题和答案绝非仅仅只是向西方人提出，亦绝非只应由西方人给出。对每个和所有人来说，这都同样有可能成为一个问题，我们又都以某种方式在给出一份自己的答案。甚至可以说，任何一种人生，人生中的任何一 件大事或小事，所留下的，无一不是这个问题，亦无一不是对这个问题的回答。 作为对这个问题的提出和对那个答案的探索，本书的第一章讨论了“存在”，最后一篇附录的文章讨论了“上帝”，而在它们之间的八个章节和所有附录的文章中，通过对宇宙、生命、生物、心灵、自我、人和社会的本体论理解 ，讨论的则是“自由” ，特别是“自由”与“平等”之间的相互依存，因为只有通过自由与平等的相互依存，“存在”与“上帝”方才能得以完美自洽，方才能回归于彼此。 通过这些讨论，本书顺便还介绍了两种尚且不为大多数西方人所知所行的自由，源于平等的自由和超越平等的自由。 因为存在或上帝既成就又超越了我们已有的一切知识，无论这知识是语言、哲学、逻辑、数学还是科学，所以，本书在内容和方法上同样既尊重它们又不为之所限。这种对现存全部知识既尊重又不为之所限的态度和做法，固然是 对形而上传统的继承，固然在自由主义中有其思想根源，亦可以说是本书作者对爱因斯坦所说“想象比知识更重要”那句话的理解、证明、实践和发扬光大。 既尊重又要超越一切知识，对任何人来说都不是一件容易做到的事情，但也同样不是一件不可能的事情。本书将一步一步地向读者解释并证明这一道理，证明这不仅符合存在或上帝的本性，也正是存在或上帝一直以来的所作所为 。 也许，无论是过去还是未来，无论是在西方还是在东方，只有当理解这本性和那所作所为之后，一个人才有可能最终走出自己，才有可能成就自己的真实与自由，人类才有可能最终走出柏拉图所说的那个洞穴，才有可能既生活在 存在的真实无妄之中，也生活在上帝的自由自在之中。 .

The author argues that consciousness and its meaning may only be defined and explained within an ontological system. Such a system is proposed in this article, with matter, energy, and life as its components, and with all its components defined as changes. The systematic relations between matter and energy and the semantic relations among all its components together may define and explain what and how consciousness is, why there is consciousness, where and when it may occur, and what is its (...) significance or meaning. (shrink)

Consciousness may not only be a problem how to know the brain but also a problem how to understand what known. Understanding is always an ontological system created as the explanation of what known by us. And, if all brains, including human brains, may be defined as the mind, consciousness must be part of our understanding of the mind. The author argues that no mind may exist if not be a life or lives, no life may exist if not be (...) a mind or a part of it, and, if it is the mind that needs to be explained, it must finally and fundamentally be explained as a life or a living system. An ontological definition of life is proposed first in this article, which is also applicable to fields such as physics, biology, psychology, and sociology. Based on an analysis of two kinds of lives and their relationship with matter and energy, a living system is modeled as the organization of two system relations, which explains not only consciousness but also wakefulness, emotion, intelligence, language and mind-body relationship. And finally, a semantic theory is reached, which takes lives as the only meaning of all symmetrical and conservative changes, such as the location changes or form changes of consciousness, or the state changes of memories. The concept of life, the model of living systems and the semantic theory together provide a framework for us to understand what and how consciousness is, why there is consciousness, where and when consciousness occurs. (shrink)

Scientism denies change and creation in science, and humanism denies change and creation in humanity. They leave no room for freedom, equality and fraternity. This book is written as the deconstruction of both scientism and humanism.

It seems to the author that, though it is possible to reach an explanation of consciousness, there is no direct way for us to go. In other words, the author believes that, only through a detour, through an understanding of everything outside mind, we may and can and will finally reach an understanding of those inside. The author tries in this article to discuss some details of such a detour, first from the understanding of Being and being, universe and life, (...) organism and human, and finally to the understanding of the mind and the mystery of our consciousness. Here, to understand Being is the core activities of the whole detour, and there the being is understandably the source and the nature of life and consciousness. (shrink)

Against ideas of dualism, logocentrism, anthropocentrism, animism, panpsychism, biocentrism, neurocentrism, foundationalism, computationalism, especially substantialism, reductionism and even physicalism, the author argues that life may be the only non-reductive concept, even the only ontological concept, with which we may explain our consciousness, intelligence and language. Life, as defined in this article, explains but not only human brains, and even not only biological organisms. Still, the mind, also as defined in this article, is the only one it explains. No mind may exist (...) if not be a life or lives, and no life may exist if not be a mind or a part of it. If it is the mind that needs to be explained, it must finally and fundamentally be explained as a life or lives. If the question is about the origin of the mind, a life or lives must be the ultimate answer. In other words, life is the only attribute of mind, and mind also the only attribute of life, and therefore, consciousness, intelligence and language must be the properties of all the living systems, including non-biological living systems. A model of mind is hypothesized based on the analysis of two kinds of lives and their relationship with matter and energy. It may be deduced from this model: 1. All the memories of a living brain are its intelligence. 2. Both consciousness and nonconscious are only meaningless languages used in the communication among lives in an awakened brain. 3. Life is the only meaning of all those memories and languages. Ontologically, life may even be the only meaning of all matter and energy. -/- (A version of this article was published by the Journal of NeuroPhilosophy on 26.10.2022). (shrink)

Complexity may not be defined or explained with entities and properties. Instead, a system is proposed ontologically, epistemologically, and semantically as the definition or explanation in this paper, with matter, energy and lives as its components, and with all its components defined as changes, which might improve upon our prediction in/with complexity. -/- .

The author argues in this paper that consciousness may never be defined or explained with entities and properties, neither with brains and neurons, nor with particles, waves, and fields. Instead, a system is proposed in this paper, with matter, energy and lives as its components, and with all its components defined as changes. The definitions or explanations of consciousness based on the systematic relationships among these components are: • Ontologically, consciousness is universal, since it may only be the systematic distinction (...) between matter and energy. • Epistemologically, consciousness is unique, since it may only be the energy qualified systematically by the matter. • Semantically, consciousness is neither the cause nor the effect of mental activities, since it may only be languages. To deny its ontology means to be a dualist. To deny its epistemology means to be a Platonist. And to deny its semantics means to be an animist or panpsychist. None of them may contribute anything to neuroscience or artificial intelligence. Compared with matter and energy, life is the more difficult part of this definition and explanation, also an indispensable part since life is the only cause or effect of matter and energy. If without life, matter and energy by themselves cannot be the explanation of agency or intentional action, nor the explanation of learning and knowledge. Moreover, a system only with matter and energy as its components is fundamentally against birth, death, development, and evolution. Neither of them may explain why everything including us and our cosmos must be created but nothing may remain forever. And the only reason why there is consciousness is that it may be the birth or death of lives. Such defined or explained consciousness might be useful for us to find a more unified framework for neuroscience, the philosophy of mind, and the studies of artificial intelligence. At least, it helps us to avoid making more useless efforts. (shrink)

Based on the ontological proposition, “life is the only attribute of mind, and mind also the only attribute of life”, a model of the human mind is hypothesized in this article. It may be deduced from the proposition and the model: 1. All the structures of a brain are the potentials of its intelligence. 2. Consciousness is only the language used in the communication of an awakened brain. 3. Qualia are the same mental language manipulated by different memories. 4. Life (...) is the only meaning of all mental languages. -/- . (shrink)

With this article, the author argues that in reality nothing is or isn’t itself, that everything is both a relative proof and an absolute proof of God’s existence, and that our language, such as “nature” or “god”, is the only obstacle between Nature and God.

God is free. If free, God certainly hates being omniscient, omnipotent, eternal and perfection. If God hates so, ....

Scientism denies change and creation in science, and humanism denies change and creation in humanity. They leave no room for freedom, equality and fraternity. The paper is written as the deconstruction of both scientism and humanism.

“Being” or “being and beings” might be the meta-notion when philosophy and science were still sharing the same mind or minds in ancient Greek and Europe. To find its meaning and to become a part of the meaning are however more and more vital nowadays, not for philosophy but for science, especially for physics and biology. The author proposes in this essay that this concept may mean to us nothing more or less than the unity or unification of Parmenides’ idea (...) “being is one” and Heraclitus’ idea “all things are in flux and nothing may remain the same”. That is just as to say that a being and an entity may never be identified with the same boundary. In other words, nothing or none should ever be understood as a being. This understanding is conceptualized and linguisticalized by the author as the compound symbol “OC”. And the OC represents a synthetic and also analytical understanding of both our universe and us together. And its value and strength may be found more obvious in his concise discussion, in the last part of the essay, on the OC’s meanings to ontology, epistemology, axiology, logic, mathematics, physics, biology, cosmogony and more. (shrink)

With this article, the author argues that in reality nothing is or isn’t itself, that everything is both a relative proof and an absolute proof of God’s existence, and that our language, such as “nature” or “god”, is the only obstacle between Nature and God.

Against the divide between continental and analytic philosophies, this article means to say: 1. All understanding = ontology + language, 2. Ontology = O + C (such as the unity of Parmenides’ one and Heraclitus’ change), and 3. OC = Nature or God. In other words, OC is the only meaning of all and every language.

We may never understand what the phrase “human being” means if we do not try to understand ontological meaning of the concept “Being” or “being” or “beings”. With two essays presented together, the author tries to explain not only this concept but also its ontological consequence to other concepts such as “universe”, “life”, “organism”, “human” and “human mind”.

Plato's view on time, a key aspect of his doctrine of forms, is influenced by his reception of Parmenides, but the way in which Plato takes up and modifies Parmenides' view is a matter of ongoing scholarly debate. In this article, the author analyzes Plato's revision of Parmenidean time by exploring four temporalities: the eternal present, timeless eternity, the enduring present, and the instant between time and eternity. Through this examination, she uncovers the common origin of both the eternal present (...) of Parmenides' fragment B8 and the flowing present of the phenomenal realm in the instant (ἐξαίφνης) in Plato's Parmenides. This perspective on time offers a promising solution to Plato's problem of participation, bridging the gap between the eternal being of the form and the being in time of the particulars. (shrink)

Truth pluralism is the view that there is more than one truth property. The strong version of it (i.e. strong pluralism) further contends that no truth property is shared by all true propositions. In this paper, I help strong pluralism solve two pressing problems concerning mixed discourse: the problem of mixed inferences (PI) and the problem of mixed compounds (PC). According to PI, strong pluralism is incompatible with the truth- preservation notion of validity; according to PC, strong pluralists cannot find (...) any appropriate truth property for mixed compound propositions, whose atomic constituents are from different domains of discourse (e.g., <sky is blue and chocolate is tasty>). I argue that the strong pluralist is motivated to take the truth predicate in truth-involving universal statements to be deflationary to avoid the two pressing problems. Such a move entails that the truth predicate in the platitude of validity (V) for any argument, it is valid if and only if necessarily its conclusion is true when its premises are all true does not denote any substantive truth property. Instead, it is merely an expressive device to help people generalize instances of (V) to (V). Analogous stories hold for the truth predicate in the platitudes of compound (e.g., conjunction). The upshot is that, the strong pluralist can solve PI and PC by further conceding that mixed compounds are true/false in a deflationary way. (shrink)

The yin yang model of thinking is most essential to the Chinese cosmology, ontology and outlook on life. This paper is a systematic discussion of such a dialectical way of thinking and its significance. It starts with investigating the origin and the meaning of terms “yin” and “yang”, and explains the later developed yin yang doctrine; it then shows how greatly and profoundly the yin yang model of thinking has influenced Chinese philosophy and Chinese character. It concludes that Chinese naturalistic, (...) dialectical, and optimistic attitudes toward the world and life are all based on the yin yang model of thinking and that the yin yang doctrine is the starting point for anyone to understand Chinese people and their philosophies. (shrink)

Both motivational internalism and externalism need to explain why sometimes moral judgments tend to motivate us. In this paper, I argue that Dreier’ second-order desire model cannot be a plausible externalist alternative to explain the connection between moral judgments and motivation. I explain that the relevant second-order desire is merely a constitutive requirement of rationality because that desire makes a set of desires more unified and coherent. As a rational agent with the relevant second-order desire is disposed towards coherence, she (...) will have some motivation to act in accordance with her moral judgments. Dreier’s second-order desire model thus collapses into a form of internalism and cannot be a plausible externalist option to explain the connection between moral judgments and motivation. (shrink)

Based on a crowdsourced truth value judgment experiment, we provide empirical evidence challenging two classical views in semantics, and we develop a novel account of counterfactuals that combines ideas from inquisitive semantics and causal reasoning. First, we show that two truth-conditionally equivalent clauses can make different semantic contributions when embedded in a counterfactual antecedent. Assuming compositionality, this means that the meaning of these clauses is not fully determined by their truth conditions. This finding has a clear explanation in inquisitive semantics: (...) truth-conditionally equivalent clauses may be associated with different propositional alternatives, each of which counts as a separate counterfactual assumption. Second, we show that our results contradict the common idea that the interpretation of a counterfactual involves minimizing change with respect to the actual state of affairs. We propose to replace the idea of minimal change by a distinction between foreground and background for a given counterfactual assumption: the background is held fixed in the counterfactual situation, while the foreground can be varied without any minimality constraint. (shrink)

This is a study of the treatment of library patron privacy in licenses for electronic journals in academic libraries. We begin by distinguishing four facets of privacy and intellectual freedom based on the LIS and philosophical literature. Next, we perform a content analysis of 42 license agreements for electronic journals, focusing on terms for enforcing authorized use and collection and sharing of user data. We compare our findings to model licenses, to recommendations proposed in a recent treatise on licenses, and (...) to our account of the four facets of intellectual freedom. We find important conflicts with each. (shrink)

Generic statements, such as "Bees are striped" are thought to be a central vehicle by which essentialist beliefs are transmitted. But work on generics and essentialism almost never focuses on the type of properties mentioned in generic statements. We test the hypothesis that teleological properties, what something is for, affect categorization judgments more strongly than behavioral, biological, or social properties. In Experiment 1, participants categorized properties as being either behavioral, biological, social, or teleological. In Experiment 2, we used the top (...) four properties from each group to describe a generic noun or a specific individual. Participants then categorized creatures that had one of their properties transformed. We found that changes to teleological properties had the strongest impact on categorization judgments. In Experiment 3, we also found that teleological properties mattered more in an induction task. We suggest that teleological properties play this privileged role in categorization because they are treated as essential properties. (shrink)

The results revealed that students who remained in China experienced challenges which included anxiety, closure of campuses, lockdown, their parents’ concern regarding health issues, and not being able to meet with friends. On the other hand, students who had left China during the pandemic were confined to their home countries. This group of students experienced more severe problems than the students who remained in China. Since the transition to home countries was “unplanned,” they were not ready to readjust to their (...) native culture and were vulnerable to severe reverse culture shock. Upon returning to their home countries, international students faced a number of challenges, including readjustment to their home countries and changes in their lives in host and home countries. In addition, they lost social and academic resources, such as the disruption of study environment, losing important group memberships, financial constraints, visa expiry, graduation delay, and academic suspension. (shrink)

How do essentialist beliefs about categories arise? We hypothesize that such beliefs are transmitted via language. We subject large language models (LLMs) to vignettes from the literature on essentialist categorization and find that they align well with people when the studies manipulated teleological information -- information about what something is for. We examine whether in a classic test of essentialist categorization -- the transformation task -- LLMs prioritize teleological properties over information about what something looks like, or is made of. (...) Experiments 1 and 2 find that telos and what something is made of matter more than appearance. Experiment 3 manipulates all three factors and finds that what something is for matters more than what it's made of. Overall, these studies suggest that language alone may be sufficient to give rise to essentialist beliefs, and that information about what something is for matters more. (shrink)

The topics approached in this collection of papers are: neutrosophic sets; neutrosophic logic; generalized neutrosophic set; neutrosophic rough set; multigranulation neutrosophic rough set (MNRS); neutrosophic cubic sets; triangular fuzzy neutrosophic sets (TFNSs); probabilistic single-valued (interval) neutrosophic hesitant fuzzy set; neutro-homomorphism; neutrosophic computation; quantum computation; neutrosophic association rule; data mining; big data; oracle Turing machines; recursive enumerability; oracle computation; interval number; dependent degree; possibility degree; power aggregation operators; multi-criteria group decision-making (MCGDM); expert set; soft sets; LA-semihypergroups; single valued trapezoidal neutrosophic number; (...) inclusion relation; Q-linguistic neutrosophic variable set; vector similarity measure; fundamental neutro-homomorphism theorem; neutro-isomorphism theorem; quasi neutrosophic triplet loop; quasi neutrosophic triplet group; BE-algebra; cloud model; fuzzy measure; clustering algorithm; and many more. (shrink)

In the remainder of this article, we will disarm an important motivation for epistemic contextualism and interest-relative invariantism. We will accomplish this by presenting a stringent test of whether there is a stakes effect on ordinary knowledge ascription. Having shown that, even on a stringent way of testing, stakes fail to impact ordinary knowledge ascription, we will conclude that we should take another look at classical invariantism. Here is how we will proceed. Section 1 lays out some limitations of previous (...) research on stakes. Section 2 presents our study and concludes that there is little evidence for a substantial stakes effect. Section 3 responds to objections. The conclusion clears the way for classical invariantism. (shrink)

The mind thoughts of Wang Yangming come from long-term moral and spiritual practices. After the knowledge and action are honed, they fall on the level of conscience. In the early years, Yangming paid close attention to the mind. With the help of the concentrated observation amendments of law in Buddhism, Yangming looked at the ideas that have been developed and not developed from the perspective of the doctrine of the mean. Yangming believes that the essence of the dynamic mind is (...) natural. Therefore, it realizes the subtle purity of the mind from keeping one and settling down and from pure to spontaneous. At the same time, Yangming believes that the depth of Tao has a charm that is different from ordinary consciousness. However, Yangming criticized Buddhism for obtaining the silence of the no mind and the immobile mind through the practice of emptiness. Contrarily, Yangming paid more attention to the experience of "light" in moral practice, which made Confucianism standardize the practice of knowledge and action to the practice of mindfulness and doing instead of being in vain. The paper explored the philosophy of mind of Wang Yangming from three dimensions: one mind, no mind, and Mindfulness. (shrink)

Ratio, Volume 34, Issue 4, Page 303-311, December 2021.

Mystical religious experiences typically purport to engage with the transcendent and often claim to involve encounters with spiritual entities or a detachment from the material world. Daoism diverges from this paradigm. This paper examines Daoist mystical experiences of bodily transformations and explores their epistemological implications. Specifically, we defend the justificatory power of Daoist somatic experiences against the disanalogy objection. The disanalogy objection posits that mystical experiences, in contrast to sense perceptions, are not socially verifiable and thereby lack prima facie epistemic (...) value. We argue that some Daoist mystical bodily states, being essentially spatiotemporal, are exempt from this challenge. This leads to a broader understanding of mysticism and offers a partial resolution to the disanalogy objection. (shrink)

Mystical religious experiences typically purport to engage with the transcendent and often claim to involve encounters with spiritual entities or a detachment from the material world. Daoism diverges from this paradigm. This paper examines Daoist mystical experiences of bodily transformations and explores their epistemological implications. Specifically, we defend the justificatory power of Daoist somatic experiences against the disanalogy objection. The disanalogy objection posits that mystical experiences, in contrast to sense perceptions, are not socially verifiable and thereby lack prima facie epistemic (...) value. We argue that some Daoist mystical bodily states, being essentially spatiotemporal, are exempt from this challenge. This leads to a broader understanding of mysticism and offers a partial resolution to the disanalogy objection. (shrink)

The main goal of this paper is to investigate the relation between the meaning of a sentence and its truth conditions. We report on a comprehension experiment on counterfactual conditionals, based on a context in which a light is controlled by two switches. Our main finding is that the truth-conditionally equivalent clauses (i) "switch A or switch B is down" and (ii) "switch A and switch B are not both up" make different semantic contributions when embedded in a conditional antecedent. (...) Assuming compositionality, this means that (i) and (ii) differ in meaning, which implies that the meaning of a sentential clause cannot be identified with its truth conditions. We show that our data have a clear explanation in inquisitive semantics: in a conditional antecedent, (i) introduces two distinct assumptions, while (ii) introduces only one. Independently of the complications stemming from disjunctive antecedents, our results also challenge analyses of counterfactuals in terms of minimal change from the actual state of affairs: we show that such analyses cannot account for our findings, regardless of what changes are considered minimal. (shrink)

The topics approached in the 52 papers included in this book are: neutrosophic sets; neutrosophic logic; generalized neutrosophic set; neutrosophic rough set; multigranulation neutrosophic rough set (MNRS); neutrosophic cubic sets; triangular fuzzy neutrosophic sets (TFNSs); probabilistic single-valued (interval) neutrosophic hesitant fuzzy set; neutro-homomorphism; neutrosophic computation; quantum computation; neutrosophic association rule; data mining; big data; oracle Turing machines; recursive enumerability; oracle computation; interval number; dependent degree; possibility degree; power aggregation operators; multi-criteria group decision-making (MCGDM); expert set; soft sets; LA-semihypergroups; single valued (...) trapezoidal neutrosophic number; inclusion relation; Q-linguistic neutrosophic variable set; vector similarity measure; fundamental neutro-homomorphism theorem; neutro-isomorphism theorem; quasi neutrosophic triplet loop; quasi neutrosophic triplet group; BE-algebra; cloud model; Maclaurin symmetric mean; pseudo-BCI algebra; hesitant fuzzy set; photovoltaic plan; decision-making trial and evaluation laboratory (DEMATEL); Choquet integral; fuzzy measure; clustering algorithm; and many more. (shrink)

Does the Ship of Theseus present a genuine puzzle about persistence due to conflicting intuitions based on “continuity of form” and “continuity of matter” pulling in opposite directions? Philosophers are divided. Some claim that it presents a genuine puzzle but disagree over whether there is a solution. Others claim that there is no puzzle at all since the case has an obvious solution. To assess these proposals, we conducted a cross-cultural study involving nearly 3,000 people across twenty-two countries, speaking eighteen (...) different languages. Our results speak against the proposal that there is no puzzle at all and against the proposal that there is a puzzle but one that has no solution. Our results suggest that there are two criteria—“continuity of form” and “continuity of matter”— that constitute our concept of persistence and these two criteria receive different weightings in settling matters concerning persistence. (shrink)

Mathematical cognition is one of the most important cognitive functions of human beings. The latest brain and cognitive research have shown that mathematical cognition is a system with multiple components and subsystems. It has phylogenetic root, also is related to ontogenetic development and learning, relying on a large-scale cerebral network including parietal, frontal and temporal regions. Especially, the parietal cortex plays an important role during mathematical cognitive processes. This indicates that language and visuospatial functions are both key to mathematical cognition. (...) All of those advances have important implications for basic mathematical education. (shrink)

In this article I give a critical evaluation of the use and limitations of null-model-based hypothesis testing as a research strategy in the biological sciences. According to this strategy, the null model based on a randomization procedure provides an appropriate null hypothesis stating that the existence of a pattern is the result of random processes or can be expected by chance alone, and proponents of other hypotheses should first try to reject this null hypothesis in order to demonstrate their own (...) hypotheses. Using as an example the controversy over the use of null hypotheses and null models in species co-occurrence studies, I argue that null-model-based hypothesis testing fails to work as a proper analog to traditional statistical null-hypothesis testing as used in well-controlled experimental research, and that the random process hypothesis should not be privileged as a null hypothesis. Instead, the possible use of the null model resides in its role of providing a way to challenge scientists’ commonsense judgments about how a seemingly unusual pattern could have come to be. Despite this possible use, null-model-based hypothesis testing still carries certain limitations, and it should not be regarded as an obligation for biologists who are interested in explaining patterns in nature to first conduct such a test before pursuing their own hypotheses. (shrink)

The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...) research. PRO (http://pir.georgetown.edu/pro) is part of the Open Biomedical Ontologies (OBO) Foundry. (shrink)

Functionally graded materials (FGMs) have been used in many different kinds of applications in recent years and have attracted significant research attention. However, we do not yet have a commonly accepted way of representing the various aspects of FGMs. Lack of standardised vocabulary creates obstacles to the extraction of useful information relating to pertinent aspects of different applications. A standard resource is needed for describing various elements of FGMs, including existing applications, manufacturing techniques, and material characteristics. This motivated the creation (...) of the FGM Ontology (FGMO) in 2016. Here, we present a revised and expanded version of the FGM Ontology, which includes enrichments along four dimensions: (1) documenting recent FGMs applications; (2) reorganising the framework to incorporate an updated representation of types of manufacturing processes; (3) enriching the axioms of the ontology; and (4) importing mid-level ontologies from the Common Core Ontologies (CCO) and Product Life Cycle (PLC) Ontologies. The work is being carried out within the framework of the Industry Ontology Foundry (IOF), and the ontology is conformant to Basic Formal Ontology (BFO). (shrink)

Current work in language models (LMs) helps us speed up or even skip thinking by accelerating and automating cognitive work. But can LMs help us with critical thinking -- thinking in deeper, more reflective ways which challenge assumptions, clarify ideas, and engineer new concepts? We treat philosophy as a case study in critical thinking, and interview 21 professional philosophers about how they engage in critical thinking and on their experiences with LMs. We find that philosophers do not find LMs to (...) be useful because they lack a sense of selfhood (memory, beliefs, consistency) and initiative (curiosity, proactivity). We propose the selfhood-initiative model for critical thinking tools to characterize this gap. Using the model, we formulate three roles LMs could play as critical thinking tools: the Interlocutor, the Monitor, and the Respondent. We hope that our work inspires LM researchers to further develop LMs as critical thinking tools and philosophers and other 'critical thinkers' to imagine intellectually substantive uses of LMs. (shrink)

The explanatory challenge of sentience is known as the “hard problem of consciousness”: How does subjective experience arise from physical objects and their relations? Despite some optimistic claims, the perennial struggle with this question shows little evidence of imminent resolution. In this article I focus on the “why” rather than on the “how” of sentience. Specifically, why did sentience evolve in organic lifeforms? From an evolutionary perspective this question can be framed: “What adaptive problem(s) did organisms face in their evolutionary (...) past and how were those challenges met? I argue that sentience was a critical component of the adaptive solution (i.e., adopting an agentic stance) to increasingly complex and unpredictable demands placed on vertebrates approximately 500 million years ago (the so-called Cambrian explosion). One consequence of taking an agentic stance is that it freed the organism from its neural moorings, positioning it within phenomenal space outside its brain. (shrink)

Critical realism, championed by its proponents as the most promising post-positivist social science paradigm, has gained significant influence in the last few decades. This paper provides a critical evaluation of the critical realism movement in the hope of facilitating more fruitful dialogues between its proponents and rivalling schools of sociologists. Two concerns are raised about contemporary critical realism. First, critical realism is not the only philosophical school against positivism and not necessarily the best. Second, critical realists exaggerate the importance of (...) critical realism to social science and conflate philosophy of science with sociological theories. (shrink)

I do two things in this paper: firstly, I analyze the origins and the casting away of truscum activists and secondly, I develop a stronger metaphysical framework for what it means to be trans. I sketch a brief history of the truscum community, then I argue why mainstream trans activism’s arguments against the truscum are insufficient. Then I seek to provide a better nominalist argument, borrowing from the works of Natalie Stoljar, against the truscum’s metaphysical account of transness. That’s to (...) say I argue that transness is complex and only entails combinations of properties that may or may not overlap. In the final sections, I argue why my account of transness resolves the pragmatic and metaphysical worries of truscums; I also briefly address concerns from gender abolitionists. Written in 2023. (shrink)

Coronavirus disease 2019 can lead to respiratory failure. Some patients require extracorporeal membrane oxygenation support. During the current pandemic, health care resources in some cities have been overwhelmed, and doctors have faced complex decisions about resource allocation. We present a case in which a pediatric hospital caring for both children and adults seeks to establish guidelines for the use of extracorporeal membrane oxygenation if there are not enough resources to treat every patient. Experts in critical care, end-of-life care, bioethics, and (...) health policy discuss if age should guide rationing decisions. (shrink)

Weber's 'science as a vocation' has often been viewed as a therapeutic concept with no functional significance in the fully bureaucratized and professionalized modern science. However, development in the philosophy of science in the last century, especially the Kuhn thesis of the discontinuity of scientific progress and the Duhem-Quine thesis of underdetermination, shows that Weber's distinction between science as a vocation and science as a profession (career) can potentially answer one of the oldest questions in science studies: What makes scientific (...) breakthroughs possible? (shrink)

Meritocracy claims to reward the meritorious with more resources, thereby achieving social efficiency and justice in a level playground. This article argues that the rise of meritocracy in a society is the institutional consequence of adopting progressive humanism, an ideal-type worldview that advocates the harmonious co-realization of individual achievement and social contribution. However, meritocracy is a self-defeating illusion because, even in a level playground, it only rewards conspicuous and wasteful display of ‘merit’ rather than genuine contributions to society. Similar to (...) the promise of an afterlife to Catholicism, the illusion of meritocracy constitutes an indispensable theodicy to progressive humanism. For societies holding such worldviews, meritocracy is a necessary illusion that cannot be dispelled by institutional reforms or political movements. (shrink)

The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integration, sharing, and analysis. Accordingly, we initiated the (...) development of the community-based Coronavirus Infectious Disease Ontology in early 2020. -/- As an Open Biomedical Ontology (OBO) library ontology, CIDO is open source and interoperable with other existing OBO ontologies. CIDO is aligned with the Basic Formal Ontology and Viral Infectious Disease Ontology. CIDO has imported terms from over 30 OBO ontologies. For example, CIDO imports all SARS-CoV-2 protein terms from the Protein Ontology, COVID-19-related phenotype terms from the Human Phenotype Ontology, and over 100 COVID-19 terms for vaccines (both authorized and in clinical trial) from the Vaccine Ontology. CIDO systematically represents variants of SARS-CoV-2 viruses and over 300 amino acid substitutions therein, along with over 300 diagnostic kits and methods. CIDO also describes hundreds of host-coronavirus protein-protein interactions (PPIs) and the drugs that target proteins in these PPIs. CIDO has been used to model COVID-19 related phenomena in areas such as epidemiology. The scope of CIDO was evaluated by visual analysis supported by a summarization network method. CIDO has been used in various applications such as term standardization, inference, natural language processing (NLP) and clinical data integration. We have applied the amino acid variant knowledge present in CIDO to analyze differences between SARS-CoV-2 Delta and Omicron variants. CIDO's integrative host-coronavirus PPIs and drug-target knowledge has also been used to support drug repurposing for COVID-19 treatment. -/- CIDO represents entities and relations in the domain of coronavirus diseases with a special focus on COVID-19. It supports shared knowledge representation, data and metadata standardization and integration, and has been used in a range of applications. (shrink)

Duncan Pritchard recently proposed a Wittgensteinian solution to closure-based skepticism. According to Wittgenstein, all epistemic systems assume certain truths. The notions that we are not disembodied brains, that the Earth has existed for a long time and that one’s name is such-and-such all function as “hinge commitments.” Pritchard views a hinge commitment as a positive propositional attitude that is not a belief. Because closure principles concern only knowledge-apt beliefs, they do not apply to hinge commitments. Thus, from the fact that (...) a subject knows that he is sitting in a room, and the fact that the subject’s sitting in a room entails his bodily existence, it does not follow that the subject also knows that he is not an envatted brain. This paper rejects Pritchard’s non-belief reading of hinge commitments. I start by showing that the non-belief reading fails to solve the skeptical paradox because the reasons that Pritchard uses to support the non-belief reading do not exempt hinge propositions from closure principles. I then proceed to argue that the non-belief reading is false as it claims that hinge commitments, unlike ordinary beliefs, are rationally unresponsive—with the help of a scenario in which a subject’s experience is internally chaotic, we can safely conclude that the hinge commitment that one is not systematically mistaken about the world is equally responsive to one’s evidential situations. (shrink)