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  1. Biometaphysics.Barry Smith - 2009 - In Robin Le Poidevin, Simons Peter, McGonigal Andrew & Ross P. Cameron (eds.), The Routledge Companion to Metaphysics. New York: Routledge. pp. 537-544.
    While Darwin is commonly supposed to have demonstrated the inapplicability of the Aristotelian ontology of species to biological science, recent developments, especially in the wake of the Human Genome Project, have given rise to a new golden age of classification in which ontological ideas -- as for example in the Gene Ontology, the Cell Ontology, the Protein Ontology, and so forth -- are once again playing an important role. In regard to species, on the other hand, matters are more complex. (...)
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  • Philosophy of Psychiatry.Jonathan Y. Tsou - 2021 - Cambridge: Cambridge University Press.
    Jonathan Y. Tsou examines and defends positions on central issues in philosophy of psychiatry. The positions defended assume a naturalistic and realist perspective and are framed against skeptical perspectives on biological psychiatry. Issues addressed include the reality of mental disorders; mechanistic and disease explanations of abnormal behavior; definitions of mental disorder; natural and artificial kinds in psychiatry; biological essentialism and the projectability of psychiatric categories; looping effects and the stability of mental disorders; psychiatric classification; and the validity of the DSM's (...)
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  • Social Construction, HPC Kinds, and the Projectability of Human Categories.Jonathan Y. Tsou - 2020 - Philosophy of the Social Sciences 50 (2):115-137.
    This paper addresses the question of how human science categories yield projectable inferences by critically examining Ron Mallon’s ‘social role’ account of human kinds. Mallon contends that human categories are projectable when a social role produces a homeostatic property cluster (HPC) kind. On this account, human categories are projectable when various social mechanisms stabilize and entrench those categories. Mallon’s analysis obscures a distinction between transitory and robust projectable inferences. I argue that the social kinds discussed by Mallon yield the former, (...)
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  • On the nature of the species problem and the four meanings of 'species'.Thomas A. C. Reydon - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (1):135-158.
    Present-day thought on the notion of species is troubled by a mistaken understanding of the nature of the issue: while the species problem is commonly understood as concerning the epistemology and ontology of one single scientific concept, I argue that in fact there are multiple distinct concepts at stake. An approach to the species problem is presented that interprets the term ‘species’ as the placeholder for four distinct scientific concepts, each having its own role in biological theory, and an explanation (...)
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  • Microorganisms and Essentialism : A Critical Examination of the Homeostatic Property Cluster View of the Species Category.Senji Tanaka - 2012 - Journal of the Japan Association for Philosophy of Science 40 (1):9-25.
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  • Bacterial species pluralism in the light of medicine and endosymbiosis.Javier Suárez - 2016 - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia 31 (1):91-105.
    This paper aims to offer a new argument in defence bacterial species pluralism. To do so, I shall first present the particular issues derived from the conflict between the non-theoretical understanding of species as units of classification and the theoretical comprehension of them as units of evolution. Secondly, I shall justify the necessity of the concept of species for the bacterial world, and show how medicine and endosymbiotic evolutionary theory make use of different concepts of bacterial species due to their (...)
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  • Being Sceptical about Kripkean A Posteriori Necessities and Natural Kinds.Dmytro Sepetyi - 2021 - Filosofska Dumka (Philosophical Thought) 6:98-117.
    The article discusses Saul Kripke’s influential theories of a posteriori necessary truths and natural kinds. With respect to the statements of identity involving proper names, it is argued that although their truth is a posteriori and necessary in the specific sense of counterfactual invariance, this is of no significance for substantial philosophical issues beyond the philosophy of language, because this counterfactual invariance is a trivial consequence of the use of proper names as rigid designators. The case is made that the (...)
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  • Why the Debate about the Metaphysics of Biological Species Should Not Be Deflated.Giulio Sciacca - 2020 - History of Philosophy & Logical Analysis 23 (2):474-497.
    Some philosophers of biology state that the metaphysical status of biological species is context determined by the use different branches of biology make of their corresponding proper names, so that one and the same biological species can be both an individual and a natural kind. In this paper, I aim to undermine the idea, often associated with the present thesis, according to which the debate about the metaphysical status of biological species should be deflated, since it would be possible to (...)
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  • Technological biology? Things and kinds in synthetic biology.Pablo Schyfter - 2012 - Biology and Philosophy 27 (1):29-48.
    Social scientific and humanistic research on synthetic biology has focused quite narrowly on questions of epistemology and ELSI. I suggest that to understand this discipline in its full scope, researchers must turn to the objects of the field—synthetic biological artifacts—and study them as the objects in the making of a science yet to be made. I consider one fundamentally important question: how should we understand the material products of synthetic biology? Practitioners in the field, employing a consistent technological optic in (...)
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  • Modeling Conceptualization and Investigating Teaching Effectiveness.Jérôme Santini, Tracy Bloor & Gérard Sensevy - 2018 - Science & Education 27 (9-10):921-961.
    Our research addresses the issue of teaching and learning concepts in science education as an empirical question. We study the process of conceptualization by closely examining the unfolding of classroom lesson sequences. We situate our work within the practice turn line of research on epistemic practices in science education. We also adopt a practice turn approach when it comes to the learning of concepts, as we consider conceptualization as being inherent within epistemic practices. In our work, pedagogical practices are modeled (...)
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  • Species as Gene Flow Communities: Werner Kunz: Do Species Exist? Principles of Taxonomic Classification (Weinheim: Wiley-Blackwell, 2012; ISBN 978-3-527-33207-6, xxxiii + 245 pp, €79.90). [REVIEW]Thomas A. C. Reydon - 2013 - Acta Biotheoretica 61 (4):525-534.
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  • On radical solutions in the philosophy of biology: What does “individuals thinking” actually solve?Thomas A. C. Reydon - 2019 - Synthese 198 (4):3389-3411.
    The philosophy of biology is witnessing an increasing enthusiasm for what can be called “individuals thinking”. Individuals thinking is a perspective on the metaphysics of biological entities according to which conceiving of them as individuals rather than kinds enables us to expose ongoing metaphysical debates as focusing on the wrong question, and to achieve better accounts of the metaphysics of biological entities. In this paper, I examine two cases of individuals thinking, the claim that species are individuals and the claim (...)
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  • Classes or Individuals? The Paradox of Systematics Revisited.Alessandro Rapini - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 35 (4):675-695.
    The circumscription of taxa and classification of organisms are fundamental tasks in the systematization of biological diversity. Their success depends on a unified idea concerning the species concept, evolution, and taxonomy; paradoxically, however, it requires a complete distinction between taxa and evolutionary units. To justify this view, I discuss these three topics of systematics. Species concepts are examined, and I propose a redefinition for the Taxonomic Species Concept based on nomenclatural properties, in which species are classes conventionally represented by a (...)
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  • Rethinking Cohesion and Species Individuality.Celso Neto - 2016 - Biological Theory 11 (3):01-12.
    According to the species-as-individuals thesis(hereafter S-A-I), species are cohesive entities. Barker and Wilson recently pointed out that the type of cohesion exhibited by species is fundamentally different from that of organisms (paradigmatic individuals), suggesting that species are homeostatic property cluster kinds. In this article, I propose a shift in how to approach cohesion in the context of S-A-I: instead of analyzing the different types of cohesion and questioning whether species have them, I focus on the role played by cohesion in (...)
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  • Towards a philosophy of microbiology.Maureen A. O’Malley & John Dupré - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):775-779.
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  • Ontic and Epistemic Differentiation: Mechanistic Problems for Microbiology and Biology.Flavia Marcacci, Michal Oleksowicz & Angela Conti - forthcoming - Foundations of Science:1-23.
    Species are considered the basic unit of biological classification and evolution. Hence, they are used as a benchmark in several fields, although the ontological status of such a category has always been a matter of debate. This paper aims to discuss the problem of the definition of species within the new mechanistic approach. Nevertheless, the boundary between entities, activities, and mechanisms remains difficult to establish and always requires an analysis of what is meant by explanation. As a case study, the (...)
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  • Typology Reconfigured: From the Metaphysics of Essentialism to the Epistemology of Representation.Alan C. Love - 2008 - Acta Biotheoretica 57 (1-2):51-75.
    The goal of this paper is to encourage a reconfiguration of the discussion about typology in biology away from the metaphysics of essentialism and toward the epistemology of classifying natural phenomena for the purposes of empirical inquiry. First, I briefly review arguments concerning ‘typological thinking’, essentialism, species, and natural kinds, highlighting their predominantly metaphysical nature. Second, I use a distinction between the aims, strategies, and tactics of science to suggest how a shift from metaphysics to epistemology might be accomplished. Typological (...)
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  • Interdisciplinary lessons for the teaching of biology from the practice of Evo-devo.Alan C. Love - 2013 - Science & Education 22 (2):255–278.
    Evolutionary developmental biology (Evo-devo) is a vibrant area of contemporary life science that should be (and is) increasingly incorporated into teaching curricula. Although the inclusion of this content is important for biological pedagogy at multiple levels of instruction, there are also philosophical lessons that can be drawn from the scientific practices found in Evo-devo. One feature of particular significance is the interdisciplinary nature of Evo-devo investigations and their resulting explanations. Instead of a single disciplinary approach being the most explanatory or (...)
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  • Pheneticism reconsidered.Tim Lewens - 2012 - Biology and Philosophy 27 (2):159-177.
    The pheneticist philosophy holds that biological taxa are clusters of entities united by a form of all-things-considered resemblance. This view of taxonomy has come in for almost universal criticism from philosophers, and has received little praise from biologists, over the past 30 years or so. This article defends a modest pheneticism, understood as part of a pluralist view of taxonomy. First, phenetic approaches to taxonomy are alive and well in biological practice, especially in the areas of microbiology and botany. Second, (...)
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  • Classificatory Theory in Data-intensive Science: The Case of Open Biomedical Ontologies.Sabina Leonelli - 2012 - International Studies in the Philosophy of Science 26 (1):47 - 65.
    Knowledge-making practices in biology are being strongly affected by the availability of data on an unprecedented scale, the insistence on systemic approaches and growing reliance on bioinformatics and digital infrastructures. What role does theory play within data-intensive science, and what does that tell us about scientific theories in general? To answer these questions, I focus on Open Biomedical Ontologies, digital classification tools that have become crucial to sharing results across research contexts in the biological and biomedical sciences, and argue that (...)
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  • Classificatory Theory in Biology.Sabina Leonelli - 2013 - Biological Theory 7 (4):338-345.
    Scientific classification has long been recognized as involving a specific style of reasoning and doing research, and as occasionally affecting the development of scientific theories. However, the role played by classificatory activities in generating theories has not been closely investigated within the philosophy of science. I argue that classificatory systems can themselves become a form of theory, which I call classificatory theory, when they come to formalize and express the scientific significance of the elements being classified. This is particularly evident (...)
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  • In Quest of 'Good' Medical Classification Systems.Lara K. Kutschenko - 2011 - Medicine Studies 3 (1):53-70.
    Medical classification systems aim to provide a manageable taxonomy for sorting diagnoses into their proper classes. The question, this paper wants to critically examine, is how to correctly systematise diseases within classification systems that are applied in a variety of different settings. ICD and DSM , the two major classification systems in medicine and psychiatry, will be the main subjects of this paper; however, the arguments are not restricted to these classification systems but point out general methodological and epistemological challenges (...)
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  • Blurring nature at its boundaries. Vague phenomena in current stem cell debate.Martin Hähnel - 2017 - Medicine, Health Care and Philosophy 20 (3):373-381.
    This paper illuminates the explanatory role of vagueness und species membership against the background of scientific developments in recent stem cell research. With the help of the Neo-Aristotelian concept of “life form naturalism” ontologically vague entities such as stem cells, all above induced pluripotent stem cells, could be described as necessary constituents for the correct sorting and naming of natural processes and its bearers. Furthermore this specific assessment allows drawing some important ontological and ethical consequences.
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  • Messy Chemical Kinds.Joyce C. Havstad - 2018 - British Journal for the Philosophy of Science 69 (3):719-743.
    Following Kripke and Putnam, the received view of chemical kinds has been a microstructuralist one. To be a microstructuralist about chemical kinds is to think that membership in said kinds is conferred by microstructural properties. Recently, the received microstructuralist view has been elaborated and defended, but it has also been attacked on the basis of complexities, both chemical and ontological. Here, I look at which complexities really challenge the microstructuralist view; at how the view itself might be made more complicated (...)
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  • Complexity begets crosscutting, dooms hierarchy.Joyce C. Havstad - 2021 - Synthese 198 (8):7665-7696.
    There is a perennial philosophical dream of a certain natural order for the natural kinds. The name of this dream is ‘the hierarchy requirement’. According to this postulate, proper natural kinds form a taxonomy which is both unique and traditional. Here I demonstrate that complex scientific objects exist: objects which generate different systems of scientific classification, produce myriad legitimate alternatives amongst the nonetheless still natural kinds, and make the hierarchical dream impossible to realize, except at absurdly great cost. Philosophical hopes (...)
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  • Natural Kinds: Rosy Dawn, Scholastic Twilight.Ian Hacking - 2007 - Royal Institute of Philosophy Supplement 61:203-239.
    The rosy dawn of my title refers to that optimistic time when the logical concept of a natural kind originated in Victorian England. The scholastic twilight refers to the present state of affairs. I devote more space to dawn than twilight, because one basic problem was there from the start, and by now those origins have been forgotten. Philosophers have learned many things about classification from the tradition of natural kinds. But now it is in disarray and is unlikely to (...)
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  • Not by structures alone: Can the immune system recognize microbial functions?Gregor P. Greslehner - 2020 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 84 (C):101336.
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  • Hidden treasure in the linnean hierarchy.John Dupré - 2002 - Biology and Philosophy 17 (3):423-433.
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  • Causation and melanoma classification.Brendan Clarke - 2011 - Theoretical Medicine and Bioethics 32 (1):19-32.
    In this article, I begin by giving a brief history of melanoma causation. I then discuss the current manner in which malignant melanoma is classified. In general, these systems of classification do not take account of the manner of tumour causation. Instead, they are based on phenomenological features of the tumour, such as size, spread, and morphology. I go on to suggest that misclassification of melanoma is a major problem in clinical practice. I therefore outline an alternative means of classifying (...)
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  • A Multi-Dimensional Pluralist Response to the DSM-Controversies.Anke Bueter - 2019 - Perspectives on Science 27 (2):316-343.
    The Diagnostic and Statistical Manual of Mental Disorders has elicited numerous criticisms throughout its history. Its particularly controversial status has not been resolved by the recent release of the DSM-5 ; rather, the new edition has amplified debates in psychiatry as well as philosophy and the wider public. To a certain extent, such controversies are to be expected because of the influential role the DSM plays in science and health care. Researchers have often been required to use the DSM classification (...)
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  • A Pluralist Approach to Extension: The Role of Materiality in Scientific Practice for the Reference of Natural Kind Terms.Ann-Sophie Barwich - 2013 - Biological Theory 7 (2):100-108.
    This article argues for a different outlook on the concept of extension, especially for the reference of general terms in scientific practice. Scientific realist interpretations of the two predominant theories of meaning, namely Descriptivism and Causal Theory, contend that a stable cluster of descriptions or an initial baptism fixes the extension of a general term such as a natural kind term. This view in which the meaning of general terms is presented as monosemantic and the referents as stable, homogeneous, and (...)
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  • Classes or Individuals? The Paradox of Systematics Revisited.Alessandro Rapini - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 35 (4):675-695.
    The circumscription of taxa and classification of organisms are fundamental tasks in the systematization of biological diversity. Their success depends on a unified idea concerning the species concept, evolution, and taxonomy; paradoxically, however, it requires a complete distinction between taxa and evolutionary units. To justify this view, I discuss these three topics of systematics. Species concepts are examined, and I propose a redefinition for the Taxonomic Species Concept based on nomenclatural properties, in which species are classes conventionally represented by a (...)
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  • Special Issue: Philosophical Considerations in the Teaching of Biology. Part II, Evolution, Development and Genetics.Kostas Kampourakis (ed.) - 2013 - Springer (Science & Education).
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  • Species.Marc Ereshefsky - 2010 - Stanford Encyclopedia of Philosophy.
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  • Natural kinds.Emma Tobin & Alexander Bird - 2009 - Stanford Encyclopedia of Philosophy.
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  • In Search of Psychiatric Kinds: Natural Kinds and Natural Classification in Psychiatry.Nicholas Slothouber - unknown
    In recent years both philosophers and scientists have asked whether or not our current kinds of mental disorder—e.g., schizophrenia, depression, bipolar disorder—are natural kinds; and, moreover, whether or not the search for natural kinds of mental disorder is a realistic desideratum for psychiatry. In this dissertation I clarify the sense in which a kind can be said to be “natural” or “real” and argue that, despite a few notable exceptions, kinds of mental disorder cannot be considered natural kinds. Furthermore, I (...)
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  • Species Pluralism: Conceptual, Ontological, and Practical Dimensions.Justin Bzovy - unknown
    Species are central to biology, but there is currently no agreement on what the adequate species concept should be, and many have adopted a pluralist stance: different species concepts will be required for different purposes. This thesis is a multidimensional analysis of species pluralism. First I explicate how pluralism differs monism and relativism. I then consider the history of species pluralism. I argue that we must re-frame the species problem, and that re-evaluating Aristotle's role in the histories of systematics can (...)
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  • Robustness, Diversity of Evidence, and Probabilistic Independence.Jonah N. Schupbach - 2015 - In Mäki, Ruphy, Schurz & Votsis (eds.), Recent Developments in the Philosophy of Science: EPSA13 Helsinki. Springer. pp. 305-316.
    In robustness analysis, hypotheses are supported to the extent that a result proves robust, and a result is robust to the extent that we detect it in diverse ways. But what precise sense of diversity is at work here? In this paper, I show that the formal explications of evidential diversity most often appealed to in work on robustness – which all draw in one way or another on probabilistic independence – fail to shed light on the notion of diversity (...)
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  • Understanding human action: integrating meanings, mechanisms, causes, and contexts.Machiel Keestra - 2011 - In Repko Allen, Szostak Rick & Newell William (eds.), Interdisciplinary Research: Case Studies of Integrative Understandings of Complex Problems. Sage Publications. pp. 201-235.
    Humans are capable of understanding an incredible variety of actions performed by other humans. Even though these range from primary biological actions, like eating and fleeing, to acts in parliament or in poetry, humans generally can make sense of each other’s actions. Understanding other people’s actions is called action understanding, and it can transcend differences in race, gender, culture, age, and social and historical circumstances. Action understanding is the cognitive ability to make sense of another person’s action by integrating perceptual (...)
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  • The species problem and its logic: Inescapable ambiguity and framework-relativity.Steven James Bartlett - 2015 - Willamette University Faculty Research Website, ArXiv.Org, and Cogprints.Org.
    For more than fifty years, taxonomists have proposed numerous alternative definitions of species while they searched for a unique, comprehensive, and persuasive definition. This monograph shows that these efforts have been unnecessary, and indeed have provably been a pursuit of a will o’ the wisp because they have failed to recognize the theoretical impossibility of what they seek to accomplish. A clear and rigorous understanding of the logic underlying species definition leads both to a recognition of the inescapable ambiguity that (...)
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  • Sculpting the space of actions. Explaining human action by integrating intentions and mechanisms.Machiel Keestra - 2014 - Dissertation, University of Amsterdam
    How can we explain the intentional nature of an expert’s actions, performed without immediate and conscious control, relying instead on automatic cognitive processes? How can we account for the differences and similarities with a novice’s performance of the same actions? Can a naturalist explanation of intentional expert action be in line with a philosophical concept of intentional action? Answering these and related questions in a positive sense, this dissertation develops a three-step argument. Part I considers different methods of explanations in (...)
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