Results for 'Biological evolution and mathematics'

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  1. Marriages of Mathematics and Physics: A Challenge for Biology.Arezoo Islami & Giuseppe Longo - 2017 - Progress in Biophysics and Molecular Biology 131:179-192.
    The human attempts to access, measure and organize physical phenomena have led to a manifold construction of mathematical and physical spaces. We will survey the evolution of geometries from Euclid to the Algebraic Geometry of the 20th century. The role of Persian/Arabic Algebra in this transition and its Western symbolic development is emphasized. In this relation, we will also discuss changes in the ontological attitudes toward mathematics and its applications. Historically, the encounter of geometric and algebraic perspectives enriched (...)
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  2. Is It Really so Easy to Model Biological Evolution in Terms of Design-Free Cumulative Selection?Peter Punin - manuscript
    Abstract: Without directly taking sides in the design/anti-design debate, this paper defends the following position: the assertion that biological evolution “is” design-free presupposes the possibility to model biological evolution in a design-free way. Certainly, there are design-free models of evolution based on cumulative selection. But “to model” is a verb denoting “modeling” as the process leading to a model. So any modeling – trivially – needs “previous human design.” Nevertheless, contrary to other scientific activities which (...)
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  3.  67
    Is It Worth to Fit the Social Sciences in the Same Track as the Study of Biological Evolution?Armando Aranda-Anzaldo - 2000 - Ludus Vitalis 8 (14):213-218.
    For some the gene-centered reductionism that permeates contemporary neo-Darwinism is an obstacle for finding a common explanatory framework for both biological and cultural evolution. Thus social scientists are tempted to find new concepts that might bridge the divide between biology and sociology. Yet since Aristotle we know that the level of explanation must be commensurate with the particular question to be answered. In modern natural science there are many instances where a reductionist approach has failed to provide the (...)
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  4. The Hologenome Concept of Evolution: A Philosophical and Biological Study.Javier Suárez - 2019 - Dissertation, University of Exeter
    The hologenome concept of evolution is a hypothesis about the evolution of animals and plants. It asserts that the evolution of animals and plants was partially triggered by their interactions with their symbiotic microbiomes. In that vein, the hologenome concept posits that the holobiont (animal host + symbionts of the microbiome) is a unit of selection. -/- The hologenome concept has been severely criticized on the basis that selection on holobionts would only be possible if there were (...)
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  5.  38
    Mathematical Modeling of Biological and Social Evolutionary Macrotrends.Leonid Grinin, Alexander V. Markov & Andrey V. Korotayev - 2014 - In History & Mathematics: Trends and Cycles. Volgograd,Russia: Uchitel Publishing House. pp. 9-48.
    In the first part of this article we survey general similarities and differences between biological and social macroevolution. In the second (and main) part, we consider a concrete mathematical model capable of describing important features of both biological and social macroevolution. In mathematical models of historical macrodynamics, a hyperbolic pattern of world population growth arises from non-linear, second-order positive feedback between demographic growth and technological development. Based on diverse paleontological data and an analogy with macrosociological models, we suggest (...)
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  6.  94
    Can Mathematics Explain the Evolution of Human Language?Guenther Witzany - 2011 - Communicative and Integrative Biology 4 (5):516-520.
    Investigation into the sequence structure of the genetic code by means of an informatic approach is a real success story. The features of human language are also the object of investigation within the realm of formal language theories. They focus on the common rules of a universal grammar that lies behind all languages and determine generation of syntactic structures. This universal grammar is a depiction of material reality, i.e., the hidden logical order of things and its relations determined by natural (...)
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  7.  87
    Is Evolution Fundamental When It Comes to Defining Biological Ontology?Ellen Clarke - forthcoming - In Shamik Dasgupta & Brad Westlake (eds.), Current Controversies in Philosophy of Science. Routledge.
    I argue for the usefulness of the evolutionary kind of biological individual.
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  8. Stepping Beyond the Newtonian Paradigm in Biology. Towards an Integrable Model of Life: Accelerating Discovery in the Biological Foundations of Science.Plamen L. Simeonov, Edwin Brezina, Ron Cottam, Andreé C. Ehresmann, Arran Gare, Ted Goranson, Jaime Gomez‐Ramirez, Brian D. Josephson, Bruno Marchal, Koichiro Matsuno, Robert S. Root-­Bernstein, Otto E. Rössler, Stanley N. Salthe, Marcin Schroeder, Bill Seaman & Pridi Siregar - 2012 - In Plamen L. Simeonov, Leslie S. Smith & Andreé C. Ehresmann (eds.), Integral Biomathics: Tracing the Road to Reality. Springer. pp. 328-427.
    The INBIOSA project brings together a group of experts across many disciplines who believe that science requires a revolutionary transformative step in order to address many of the vexing challenges presented by the world. It is INBIOSA’s purpose to enable the focused collaboration of an interdisciplinary community of original thinkers. This paper sets out the case for support for this effort. The focus of the transformative research program proposal is biology-centric. We admit that biology to date has been more fact-oriented (...)
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  9. Heidegger and the Human Difference.Chad Engelland - 2015 - Journal of the American Philosophical Association 1 (1):175-193.
    This paper provides a qualified defense of Martin Heidegger’s controversial assertion that humans and animals differ in kind, not just degree. He has good reasons to defend the human difference, and his thesis is compatible with the evolution of humans from other animals. He argues that the human environment is the world of meaning and truth, an environment which peculiarly makes possible truthful activities such as biology. But the ability to be open to truth cannot be a feature of (...)
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  10.  69
    Modeling of Biological and Social Phases of Big History.Leonid Grinin, Andrey V. Korotayev & Alexander V. Markov - 2015 - In Leonid Grinin & Andrey Korotayev (eds.), Evolution: From Big Bang to Nanorobots. Volgograd,Russia: Uchitel Publishing House. pp. 111-150.
    In the first part of this article we survey general similarities and differences between biological and social macroevolution. In the second (and main) part, we consider a concrete mathematical model capable of describing important features of both biological and social macroevolution. In mathematical models of historical macrodynamics, a hyperbolic pattern of world population growth arises from non-linear, second-order positive feedback between demographic growth and technological development. Based on diverse paleontological data and an analogy with macrosociological models, we suggest (...)
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  11. Beyond Desartes and Newton: Recovering Life and Humanity.Stuart A. Kauffman & Arran Gare - 2015 - Progress in Biophysics and Molecular Biology 119 (3):219-244.
    Attempts to ‘naturalize’ phenomenology challenge both traditional phenomenology and traditional approaches to cognitive science. They challenge Edmund Husserl’s rejection of naturalism and his attempt to establish phenomenology as a foundational transcendental discipline, and they challenge efforts to explain cognition through mainstream science. While appearing to be a retreat from the bold claims made for phenomenology, it is really its triumph. Naturalized phenomenology is spearheading a successful challenge to the heritage of Cartesian dualism. This converges with the reaction against Cartesian thought (...)
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  12. Editorial. Special Issue on Integral Biomathics: Can Biology Create a Profoundly New Mathematics and Computation?Plamen L. Simeonov, Koichiro Matsuno & Robert S. Root-Bernstein - 2013 - J. Progress in Biophysics and Molecular Biology 113 (1):1-4.
    The idea behind this special theme journal issue was to continue the work we have started with the INBIOSA initiative (www.inbiosa.eu) and our small inter-disciplinary scientific community. The result of this EU funded project was a white paper (Simeonov et al., 2012a) defining a new direction for future research in theoretical biology we called Integral Biomathics and a volume (Simeonov et al., 2012b) with contributions from two workshops and our first international conference in this field in 2011. The initial impulse (...)
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  13.  99
    Does Meaning Evolve?Mark D. Roberts - 2004 - Behavior and Philosophy 32 (2):401 - 426.
    A common method of making a theory more understandable is to compare it to another theory that has been better developed. Radical interpretation is a theory that attempts to explain how communication has meaning. Radical interpretation is treated as another time-dependent theory and compared to the time-dependent theory of biological evolution. The main reason for doing this is to find the nature of the time dependence; producing analogs between the two theories is a necessary prerequisite to this and (...)
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  14. Process Philosophy and the Emergent Theory of Mind: Whitehead, Lloyd Morgan and Schelling.Arran Gare - 2002 - Concrescence 3:1-12.
    Attempts to ‘naturalize’ phenomenology challenge both traditional phenomenology and traditional approaches to cognitive science. They challenge Edmund Husserl’s rejection of naturalism and his attempt to establish phenomenology as a foundational transcendental discipline, and they challenge efforts to explain cognition through mainstream science. While appearing to be a retreat from the bold claims made for phenomenology, it is really its triumph. Naturalized phenomenology is spearheading a successful challenge to the heritage of Cartesian dualism. This converges with the reaction against Cartesian thought (...)
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  15. Utopian Social Delusions in the 21st Century.Starks Michael - 2017 - Henderson,NV, USA: Michael Starks.
    This collection of articles was written over the last 10 years and edited them to bring them up to date (2017). All the articles are about human behavior (as are all articles by anyone about anything), and so about the limitations of having a recent monkey ancestry (8 million years or much less depending on viewpoint) and manifest words and deeds within the framework of our innate psychology as presented in the table of intentionality. As famous evolutionist Richard Leakey says, (...)
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  16. Suicidal Utopian Delusions in the 21st Century: Philosophy, Human Nature and the Collapse of Civilization-- Articles and Reviews 2006-2017 2nd Edition Feb 2018.Michael Starks - 2016 - Las Vegas, USA: Reality Press.
    This collection of articles was written over the last 10 years and edited to bring them up to date (2019). All the articles are about human behavior (as are all articles by anyone about anything), and so about the limitations of having a recent monkey ancestry (8 million years or much less depending on viewpoint) and manifest words and deeds within the framework of our innate psychology as presented in the table of intentionality. As famous evolutionist Richard Leakey says, it (...)
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  17. Uniqueness, Self Belonging and Intercourse in Nature.Marvin E. kirsh - 2010 - Lambert Academic Publishing.
    This manuscript has ensued from my past studies in biochemistry (PhD, CUNY 1986) and my current endeavors in graduate study in philosophy and anthropology. The current research project began during my period as a graduate student in biochemistry with a professor of classical genetics comment that DNA was unique in the physical world. The paradox presented to relate this notion to existing natural law lead me to evolve and communicate a view that the world itself is a special case of (...)
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  18. The Evolution of Moral Intuitions and Their Feeling of Rightness.Christine Clavien & Chloë FitzGerald - forthcoming - In Joyce R. (ed.), The Routledge Handbook of Evolution and Philosophy.
    Despite the widespread use of the notion of moral intuition, its psychological features remain a matter of debate and it is unclear why the capacity to experience moral intuitions evolved in humans. We first survey standard accounts of moral intuition, pointing out their interesting and problematic aspects. Drawing lessons from this analysis, we propose a novel account of moral intuitions which captures their phenomenological, mechanistic, and evolutionary features. Moral intuitions are composed of two elements: an evaluative mental state and a (...)
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  19. Cosmic Evolution and Universal Evolutionary Principles.Leonid Grinin - 2015 - In Leonid Grinin & Andrey Korotayev (eds.), Evolution: From Big Bang to Nanorobots. Volgograd,Russia: Uchitel Publishing House. pp. 20-45.
    The present article attempts at combining Big History potential with the potential of Evolutionary Studies in order to achieve the following goals: 1) to apply the historical narrative principle to the description of the star-galaxy era of the cosmic phase of Big History; 2) to analyze both the cosmic history and similarities and differences between evolutionary laws, principles, and mechanisms at various levels and phases of Big History. As far as I know, nobody has approached this task in a systemic (...)
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  20. Human Brain Evolution, Theories of Innovation, and Lessons From the History of Technology.Alfred Gierer - 2004 - J. Biosci 29 (3):235-244.
    Biological evolution and technological innovation, while differing in many respects, also share common features. In particular, implementation of a new technology in the market is analogous to the spreading of a new genetic trait in a population. Technological innovation may occur either through the accumulation of quantitative changes, as in the development of the ocean clipper, or it may be initiated by a new combination of features or subsystems, as in the case of steamships. Other examples of the (...)
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  21. Science, Religion and Basic Biological Issues That Are Open to Interpretation.Alfred Gierer - 2009 - English Translation Of: Preprint 388, Mpi for History of Science.
    This is an English translation of my essay: Alfred Gierer Wissenschaft, Religion und die deutungsoffenen Grundfragen der Biologie. Mpi for the History of Science, preprint 388, 1-21, also in philpapers. Range and limits of science are given by the universal validity of physical laws, and by intrinsic limitations, especially in self-referential contexts. In particular, neurobiology should not be expected to provide a full understanding of consciousness and the mind. Science cannot provide, by itself, an unambiguous interpretation of the natural order (...)
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  22.  94
    The Importance of Symbiosis in Philosophy of Biology: An Analysis of the Current Debate on Biological Individuality and its Historical Roots.Javier Suárez - 2018 - Symbiosis 76 (2):77-96.
    Symbiosis plays a fundamental role in contemporary biology, as well as in recent thinking in philosophy of biology. The discovery of the importance and universality of symbiotic associations has brought new light to old debates in the field, including issues about the concept of biological individuality. An important aspect of these debates has been the formulation of the hologenome concept of evolution, the notion that holobionts are units of natural selection in evolution. This review examines the philosophical (...)
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  23.  49
    The Dead Hands of Group Selection and Phenomenology -- A Review of Individuality and Entanglement by Herbert Gintis 357p (2017).Michael Starks - 2017 - In Suicidal Utopian Delusions in the 21st Century: Philosophy, Human Nature and the Collapse of Civilization-- Articles and Reviews 2006-2017 2nd Edition Feb 2018. Henderson: Michael Starks.
    Since Gintis is a senior economist and I have read some of his previous books with interest, I was expecting some more insights into behavior. Sadly he makes the dead hands of group selection and phenomenology into the centerpieces of his theories of behavior, and this largely invalidates the work. Worse, since he shows such bad judgement here, it calls into question all his previous work. The attempt to resurrect group selection by his friends at Harvard, Nowak and Wilson, a (...)
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  24.  20
    The Dead Hands of Group Selection and Phenomenology -- A Review of Individuality and Entanglement by Herbert Gintis 357p (2017)(Review Revised 2019).Michael Starks - 2019 - In Suicidal Utopian Delusions in the 21st Century -- Philosophy, Human Nature and the Collapse of Civilization -- Articles and Reviews 2006-2019 4th Edition Michael Starks. Las Vegas, NV USA: Reality Press. pp. 364-376.
    Since Gintis is a senior economist and I have read some of his previous books with interest, I was expecting some more insights into behavior. Sadly, he makes the dead hands of group selection and phenomenology into the centerpieces of his theories of behavior, and this largely invalidates the work. Worse, since he shows such bad judgement here, it calls into question all his previous work. The attempt to resurrect group selection by his friends at Harvard, Nowak and Wilson, a (...)
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  25. Talking Monkeys : Philosophy, Psychology, Science, Religion and Politics on a Doomed Planet--Articles and Reviews 2006-2017.Michael Starks - 2017 - Las Vegas, NV USA: Reality Press.
    This collection of articles was written over the last 10 years and edited to bring them up to date (2017). The copyright page has the date of the edition and new editions will be noted there as I edit old articles or add new ones. All the articles are about human behavior (as are all articles by anyone about anything), and so about the limitations of having a recent monkey ancestry (8 million years or much less depending on viewpoint) and (...)
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  26. Mathematics, Explanation and Reductionism: Exposing the Roots of the Egyptianism of European Civilization.Arran Gare - 2005 - Cosmos and History 1 (1):54-89.
    We have reached the peculiar situation where the advance of mainstream science has required us to dismiss as unreal our own existence as free, creative agents, the very condition of there being science at all. Efforts to free science from this dead-end and to give a place to creative becoming in the world have been hampered by unexamined assumptions about what science should be, assumptions which presuppose that if creative becoming is explained, it will be explained away as an illusion. (...)
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  27. Bolzano Versus Kant: Mathematics as a Scientia Universalis.Paola Cantù - 2011 - Philosophical Papers Dedicated to Kevin Mulligan.
    The paper discusses some changes in Bolzano's definition of mathematics attested in several quotations from the Beyträge, Wissenschaftslehre and Grössenlehre: is mathematics a theory of forms or a theory of quantities? Several issues that are maintained throughout Bolzano's works are distinguished from others that were accepted in the Beyträge and abandoned in the Grössenlehre. Changes are interpreted as a consequence of the new logical theory of truth introduced in the Wissenschaftslehre, but also as a consequence of the overcome (...)
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  28. The Ethical Significance of Evolution.Andrzej Elzanowski - 2010 - In Soniewicka Stelmach (ed.), Stelmach, J., Soniewicka M., Załuski W. (red.) Legal Philosophy and the Challenges of Biosciences (Studies in the Philosophy of Law 4). Wydawnictwo Uniwersytetu Jagiellońskiego. pp. 65-76.
    DARWIN’s (1859, 1871) discoveries have profound ethical implications that continue to be misrepresented and/or ignored. In contrast to socialdarwinistic misuses of his theory, Darwin was a great humanitarian who paved the way for an integrated scientific and ethical world view. As an ethical doctrine, socialdarwinism is long dead ever since its defeat by E. G. Moore although the socialdarwinistic thought is a hard-die in the biological community. The accusations of sociobiology for being socialdarwinistic are unfounded and stem from the (...)
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  29.  56
    Epigenetics, Evolution, and Us.W. Malcolm Byrnes - 2003 - The National Catholic Bioethics Quarterly 3 (3):489-500.
    This essay moves along broad lines from molecular biology to evolutionary biology and ecology to theology. Its objectives are to: 1) present some recent scientific findings in the emerging field of epigenetics that indicate that it is “the genome in context,” not genes per se, that are important in biological development and evolution; 2) show that this weakens the gene-centric neo-Darwinist explanation of evolution which, in fact, shares a certain preformationist orientation with intelligent design theory; 3) argue (...)
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  30.  39
    The Practical Value of Biological Information for Research.Beckett Sterner - 2014 - Philosophy of Science 81 (2):175-194,.
    Many philosophers are skeptical about the scientific value of the concept of biological information. However, several have recently proposed a more positive view of ascribing information as an exercise in scientific modeling. I argue for an alternative role: guiding empirical data collection for the sake of theorizing about the evolution of semantics. I clarify and expand on Bergstrom and Rosvall’s suggestion of taking a “diagnostic” approach that defines biological information operationally as a procedure for collecting empirical cases. (...)
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  31. The Evolution of Diversity.Colin Beckley & Ute Bonillas - 2017 - Milton Keynes: Think Logically Books.
    Since the beginning of time, the pre-biological and the biological world have seen a steady increase in complexity of form and function based on a process of combination and re-combination. The current modern synthesis of evolution known as the neo-Darwinian theory emphasises population genetics and does not explain satisfactorily all other occurrences of evolutionary novelty. The authors suggest that symbiosis and hybridisation and the more obscure processes such as polyploidy, chimerism and lateral transfer are mostly overlooked and (...)
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  32. Biosemiotics, Aboutness, Meaning and Bio-Intentionality. Proposal for an Evolutionary Approach (Biosemiotics Gatherings 2015).Christophe Menant - manuscript
    The management of meaningful information by biological entities is at the core of biosemiotics [Hoffmeyer 2010]. Intentionality, the ‘aboutness’ of mental states, is a key driver in philosophy of mind. Philosophers have been reluctant to use intentionality for non human animals. Some biologists have been in favor of it. J. Hoffmeyer has been using evolutionary intentionality and Peircean semiotics to discuss a biosemiotic approach to the problem of intentionality [Hoffmeyer 1996, 2012]. Also, recent philosophical studies are bringing new openings (...)
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  33. On the Possibility of Constructive Neutral Evolution.Arlin Stoltzfus - 1999 - Journal of Molecular Evolution 49 (2):169-181.
    The neutral theory often is presented as a theory of "noise" or silent changes at an isolated "molecular level", relevant to marking the steady pace of divergence, but not to the origin of biological structure, function, or complexity. Nevertheless, precisely these issues can be addressed in neutral models, such as those elaborated here in regard to scrambled ciliate genes, gRNA-mediated RNA editing, the transition from self-splicing to spliceosomal splicing, and the retention of duplicate genes. All of these are instances (...)
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  34.  28
    Design Under Randomness: How Variation Affects the Engineering of Biological Systems.Tero Ijäs - 2018 - Biological Theory 13 (3):153-163.
    Synthetic biology offers a powerful method to design and construct biological devices for human purposes. Two prominent design methodologies are currently used. Rational design adapts the design methodology of traditional engineering sciences, such as mechanical engineering. Directed evolution, in contrast, models its design principles after natural evolution, as it attempts to design and improve systems by guiding them to evolve in a certain direction. Previous work has argued that the primary difference between these two is the way (...)
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  35. Physical Complexity and Cognitive Evolution.Peter Jedlicka - 2007 - In Carlos Gershenson, Diederik Aerts & Bruce Edmonds (eds.), Worldviews, Science, and Us: Philosophy and Complexity. World Scientific. pp. 221--231.
    Our intuition tells us that there is a general trend in the evolution of nature, a trend towards greater complexity. However, there are several definitions of complexity and hence it is difficult to argue for or against the validity of this intuition. Christoph Adami has recently introduced a novel measure called physical complexity that assigns low complexity to both ordered and random systems and high complexity to those in between. Physical complexity measures the amount of information that an organism (...)
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  36.  42
    Integrative Pluralism for Biological Function.Beckett Sterner & Samuel Cusimano - 2019 - Biology and Philosophy 34 (6):1-21.
    We introduce a new type of pluralism about biological function that, in contrast to existing, demonstrates a practical integration among the term’s different meanings. In particular, we show how to generalize Sandra Mitchell’s notion of integrative pluralism to circumstances where multiple epistemic tools of the same type are jointly necessary to solve scientific problems. We argue that the multiple definitions of biological function operate jointly in this way based on how biologists explain the evolution of protein function. (...)
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  37. The Ontological Roots of Human Science: The Message of Evolution - the Physics of Freedom (Choice).András Balázs - 2007 - World Futures 63 (8):568 – 583.
    The original proposal of H. H. Pattee (1971) of basing quantum theoretical measurement theory on the theory of the origin of life, and its far reaching consequences, is discussed in the light of a recently emerging biological paradigm of internal measurement. It is established that the "measurement problem" of quantum physics can, in principle, be traced back to the internal material constraints of the biological organisms, where choice is a fundamental attribute of the self-measurement of matter. In this (...)
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  38. Is External Memory Memory? Biological Memory and Extended Mind.Kourken Michaelian - 2012 - Consciousness and Cognition 21 (3):1154-1165.
    Clark and Chalmers claim that an external resource satisfying the following criteria counts as a memory: the agent has constant access to the resource; the information in the resource is directly available; retrieved information is automatically endorsed; information is stored as a consequence of past endorsement. Research on forgetting and metamemory shows that most of these criteria are not satisfied by biological memory, so they are inadequate. More psychologically realistic criteria generate a similar classification of standard putative external memories, (...)
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  39. The Cambrian Explosion and the Origins of Embodied Cognition.Michael Trestman - 2013 - Biological Theory 8 (1):80-92.
    Around 540 million years ago there was a sudden, dramatic adaptive radiation known as the Cambrian Explosion. This event marked the origin of almost all of the phyla (major lineages characterized by fundamental body plans) of animals that would ever live on earth, as well the appearance of many notable features such as rigid skeletons and other hard parts, complex jointed appendages, eyes, and brains. This radical evolutionary event has been a major puzzle for evolutionary biologists since Darwin, and while (...)
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  40. Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: The MIBBI Project.Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape - 2008 - Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data (...)
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  41. Genetic, Epigenetic and Exogenetic Information in Development and Evolution.Paul Edmund Griffiths - 2017 - Interface Focus 7 (5).
    The idea that development is the expression of information accumulated during evolution and that heredity is the transmission of this information is surprisingly hard to cash out in strict, scientific terms. This paper seeks to do so using the sense of information introduced by Francis Crick in his sequence hypothesis and central dogma of molecular biology. It focuses on Crick's idea of precise determination. This is analysed using an information-theoretic measure of causal specificity. This allows us to reconstruct some (...)
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  42. Determinism and Total Explanation in the Biological and Behavioral Sciences.Rasmus Grønfeldt Winther - 2014 - Encyclopedia of Life Sciences.
    Should we think of our universe as law-governed and “clockwork”-like or as disorderly and “soup”-like? Alternatively, should we consciously and intentionally synthesize these two extreme pictures? More concretely, how deterministic are the postulated causes and how rigid are the modeled properties of the best statistical methodologies used in the biological and behavioral sciences? The charge of this entry is to explore thinking about causation in the temporal evolution of biological and behavioral systems. Regression analysis and path analysis (...)
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  43. Interpretations of the Concepts of Resilience and Evolution in the Philosophy of Leibniz.Vincenzo De Florio - manuscript
    In this article I interpret resilience and evolution in view of the philosophy of Leibniz. First, I discuss resilience as a substance’s or a monad’s “quantity of essence” — its “degree of perfection” — which I express as the quality of the Whole with respect to the sum of the qualities of the Parts. Then I discuss evolution, which I interpret here as the autopoietic Principle that sets Itself in motion and creates all reality, including Itself. This Principle (...)
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  44.  40
    Generalized Empirical Method in the Biological Sciences.Terrance Quinn - 2014 - Dialogues in Philosophy, Mental and Neuro Sciences 7 (1):31.
    Robert Henman’s article, Can brain scanning and imaging techniques contribute to a theory of thinking? came to my attention recently. My own work over the years has included applications of mathematics in the biological sciences, collaboration in experimental work in biochemistry, as well as work in the philosophy of the biological sciences. Henman suggests something that, at present, would be out of the ordinary.
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  45. Human Survival: Evolution, Religion and the Irrational.Milton H. Saier & Jack T. Trevors - 2010 - Dialogues in Philosophy, Mental and Neuro Sciences 3 (1):17-20.
    Is there a possible biological explanation for religion? That is, is there a genetic basis for believing in mystical, supernatural beings when there is no scientifi c evidence for their existence? Can we explain why some people prefer to accept myth over science? Why do so many people still accept creation and refuse to embrace evolution? Is there an evolutionary basis for religious beliefs? It is certainly true that religions have been part of human civilization throughout most of (...)
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  46.  19
    Measurement in Biology is Methodized by Theory.Maël Montévil - 2019 - Biology and Philosophy 34 (3):35.
    We characterize access to empirical objects in biology from a theoretical perspective. Unlike objects in current physical theories, biological objects are the result of a history and their variations continue to generate a history. This property is the starting point of our concept of measurement. We argue that biological measurement is relative to a natural history which is shared by the different objects subjected to the measurement and is more or less constrained by biologists. We call symmetrization the (...)
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  47. An Assumption of Extreme Significance: Moore, Ross and Spencer on Ethics and Evolution.Hallvard Lillehammer - 2016 - In Uri D. Leibowitz & Neil Sinclair (eds.), Explanation in Ethics and Mathematics: Debunking and Dispensability. Oxford University Press.
    In recent years there has been a growing interest among mainstream Anglophone moral philosophers in the empirical study of human morality, including its evolution and historical development. This chapter compares these developments with an earlier point of contact between moral philosophy and the moral sciences in the early decades of the Twentieth century, as manifested in some of the less frequently discussed arguments of G. E. Moore and W. D. Ross. It is argued that a critical appreciation of Moore (...)
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  48.  93
    A Unifying Theory of Biological Function.J. H. van Hateren - 2017 - Biological Theory 12 (2):112-126.
    A new theory that naturalizes biological function is explained and compared with earlier etiological and causal role theories. Etiological theories explain functions from how they are caused over their evolutionary history. Causal role theories analyze how functional mechanisms serve the current capacities of their containing system. The new proposal unifies the key notions of both kinds of theories, but goes beyond them by explaining how functions in an organism can exist as factors with autonomous causal efficacy. The goal-directedness and (...)
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  49.  81
    Evolution's Arrow: The Direction of Evolution and the Future of Humanity.John E. Stewart - 2000 - Canberra: The Chapman Press.
    Evolution's Arrow argues that evolution is directional and progressive, and that this has major consequences for humanity. Without resort to teleology, the book demonstrates that evolution moves in the direction of producing cooperative organisations of greater scale and evolvability - evolution has organised molecular processes into cells, cells into organisms, and organisms into societies. The book founds this position on a new theory of the evolution of cooperation. It shows that self-interest at the level of (...)
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  50. Subjective Evolution of Consciousness in Modern Science and Vedāntic Philosophy: Particulate Concept to Quantum Mechanics in Modern Science and Śūnyavāda to Acintya-Bhedābheda-Tattva in Vedānta.PhD Ph D. Shanta - 2019 - In Siddheshwar Rameshwar Bhatt (ed.), Quantum Reality and Theory of Śūnya. Singapore: Springer.
    How the universe came to be what it is now is a key philosophical question. The hypothesis that it came from nothing or śūnya (as proposed by Stephen Hawking, among others) proves to be dissembling, since the quantum vacuum can hardly be considered a void (śūnya). In modern science, it is generally assumed that matter existed before the universe came to be. Modern science hypothesizes that the manifestation of life on earth is nothing but a mere increment in the complexity (...)
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