Results for 'Cathy H. Wu'

606 found
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  1. The Protein Ontology: A Structured Representation of Protein Forms and Complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  2.  62
    Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.Cecilia Arighi, Veronica Shamovsky, Anna Maria Masci, Alan Ruttenberg, Barry Smith, Darren Natale, Cathy Wu & Peter D’Eustachio - 2015 - PLoS ONE 10 (4):e0122978.
    The Protein Ontology (PRO) provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes. Comprehensive curation of experimentally known forms and annotations thereof is expected to expose discrepancies, differences, and gaps in our knowledge. We have annotated the early events of innate immune signaling mediated by Toll-Like Receptor 3 and 4 complexes in human, mouse, and chicken. The resulting ontology and annotation data set (...)
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  3.  28
    TGF-Beta Signaling Proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  4.  28
    The Representation of Protein Complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  5. Experts and Deviants: The Story of Agentive Control.Wayne Wu - 2016 - Philosophy and Phenomenological Research 92 (2):101-26.
    This essay argues that current theories of action fail to explain agentive control because they have left out a psychological capacity central to control: attention. This makes it impossible to give a complete account of the mental antecedents that generate action. By investigating attention, and in particular the intention-attention nexus, we can characterize the functional role of intention in an illuminating way, explicate agentive control so that we have a uniform explanation of basic cases of causal deviance in action as (...)
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  6. Against Division: Consciousness, Information and the Visual Streams.Wayne Wu - 2014 - Mind and Language 29 (4):383-406.
    Milner and Goodale's influential account of the primate cortical visual streams involves a division of consciousness between them, for it is the ventral stream that has the responsibility for visual consciousness. Hence, the dorsal visual stream is a ‘zombie’ stream. In this article, I argue that certain information carried by the dorsal stream likely plays a central role in the egocentric spatial content of experience, especially the experience of visual spatial constancy. Thus, the dorsal stream contributes to a pervasive feature (...)
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  7. The Case for Zombie Agency.Wayne Wu - 2013 - Mind 122 (485):217-230.
    In response to Mole 2009, I present an argument for zombie action. The crucial question is not whether but rather to what extent we are zombie agents. I argue that current evidence supports only minimal zombie agency.
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  8. Explaining Schizophrenia: Auditory Verbal Hallucination and Self-Monitoring.Wayne Wu - 2012 - Mind and Language 27 (1):86-107.
    Do self-monitoring accounts, a dominant account of the positive symptoms, explain auditory verbal hallucination (AVH)? In this essay, I argue that the account fails to answer many crucial questions any explanation of AVH must address. Where the account provides a plausible answer, I make a case for an alternative explanation: AVH is not the result of a failed control mechanism, namely failed self-monitoring, but the persistent automaticity of auditory experience of a voice. The argument emphasizes the importance of careful examination (...)
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  9. Attention as Selection for Action.Wayne Wu - 2011 - In Christopher Mole, Declan Smithies & Wayne Wu (eds.), Attention: Philosophical and Psychological Essays. Oxford University Press. pp. 97--116.
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  10. Shaking Up the Mind’s Ground Floor: The Cognitive Penetration of Visual Attention.Wayne Wu - 2017 - Journal of Philosophy 114 (1):5-32.
    In this paper, I argue that visual attention is cognitively penetrated by intention. I present a detailed account of attention and its neural basis, drawing on a recent computational model of neural modulation during attention: divisive normalization. I argue that intention shifts computations during divisive normalization. The epistemic consequences of attentional bias are discussed.
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  11. Mental Action and the Threat of Automaticity.Wayne Wu - 2013 - In Andy Clark, Julian Kiverstein & Tillman Vierkant (eds.), Decomposing the Will. Oxford University Press. pp. 244-61.
    This paper considers the connection between automaticity, control and agency. Indeed, recent philosophical and psychological works play up the incompatibility of automaticity and agency. Specifically, there is a threat of automaticity, for automaticity eliminates agency. Such conclusions stem from a tension between two thoughts: that automaticity pervades agency and yet automaticity rules out control. I provide an analysis of the notions of automaticity and control that maintains a simple connection: automaticity entails the absence of control. An appropriate analysis, however, shows (...)
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  12. The Conscious Brain: How Attention Engenders Experience, by Jesse Prinz.Wayne Wu - 2013 - Mind 122 (488):1174-1180.
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  13. Being in the Workspace, From a Neural Point of View: Comments on Peter Carruthers, 'On Central Cognition'.Wayne Wu - 2014 - Philosophical Studies 170 (1):163-174.
    In his rich and provocative paper, Peter Carruthers announces two related theses: (a) a positive thesis that “central cognition is sensory based, depending on the activation and deployment of sensory images of various sorts” (Carruthers 2013) and (b) a negative thesis that the “central mind does not contain any workspace within which goals, decisions, intentions, or non-sensory judgments can be active” (Carruthers 2013). These are striking claims suggesting that a natural view about cognition, namely that explicit theoretical reasoning involves direct (...)
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  14. Perplexities of Consciousness, by Eric Schwitzgebel. [REVIEW]Sebastian Watzl & Wayne Wu - 2012 - Mind 121 (482):524-529.
    In this review of Eric Schwitzgebel's "Perplexities of Consciousness", we discuss the book's arguments in light of the role of attention in introspection.
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  15. Is Inner Speech the Basis of Auditory Verbal Hallucination in Schizophrenia?Wayne Wu & Raymond Cho - 2014 - Frontiers in Psychiatry 14:1-3.
    We respond to Moseley and Wilkinson's defense of inner speech models of AVH.
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  16.  54
    The Relationship of Ethical Decision-Making to Business Ethics and Performance in Taiwan.Chen-Fong Wu - 2002 - Journal of Business Ethics 35 (3):163-176.
    This paper examines the relationship of ethical decision-making by individuals to corporate business ethics and organizational performance of three groups: SMEs, Outstanding SMEs and Large Enterprises, in order to provide a reference for Taiwanese entrepreneurs to practice better business ethics. The survey method involved random sampling of 132 enterprises within three groups. Some 524 out of 1320 questionnaires were valid. The survey results demonstrated that ethical decision-making by individuals, corporate business ethics and organizational performance are highly related. In summary, then, (...)
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  17.  92
    The Development of Non-Coding RNA Ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.
    Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of (...)
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  18.  40
    Derrida's Open and Its Closure: The Aporia of Différance and the Only Logic of Thinking.Mengxue Wu - 2018 - Language, Literature, Interdisciplinary Studies 2 (1):76-98.
    Derrida’s thought on “trace,” “différance,” “writing,” and “supplement” is always thought the breaking of logocentrism, the essence, the positive meaning, and the closure of the metaphysics of presence; this thinking is accordingly regarded the thinking with the fundamental structure of difference and openness. By tracking back to Saussure, Husserl and Levinas, this fundamental difference breaks the myth of ideal meaning as well as the illusion of the absolute open; its lack of ideality and absoluteness contains the fundamental difference within itself (...)
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  19. Symbiont Consciousness: Sociocultural Embodied Augmentation of Humanity.Anthony Faiola, Preethi Srinivas, Rebecca Finch & Zhengxiao Wu - manuscript
    The psychology of consciousness as explained by Vygotsky is the ability of one to focus on the inner state of being. Vygotsky’s proposition of external tools redistributing mental and external processes into internalized acts lacks the concept of embodied mediational tools existing in the current world as computational artifacts extending or augmenting human capabilities. This paper proposes sociocultural embodied augmentation theory (SEAT) as a means to explain the impact of augmenting technologies on Vygotsky’s original notion of “psychological tool,” therefore initiating (...)
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  20. I Know You Are, But What Am I?: Anti-Individualism in the Development of Intellectual Humility and Wu-Wei.Brian Robinson & Mark Alfano - 2016 - Logos and Episteme 7 (4):435-459.
    Virtues are acquirable, so if intellectual humility is a virtue, it’s acquirable. But there is something deeply problematic—perhaps even paradoxical—about aiming to be intellectually humble. Drawing on Edward Slingerland’s analysis of the paradoxical virtue of wu-wei in Trying Not To Try (New York: Crown, 2014), we argue for an anti-individualistic conception of the trait, concluding that one’s intellectual humility depends upon the intellectual humility of others. Slingerland defines wu-wei as the “dynamic, effortless, and unselfconscious state of mind of a person (...)
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  21. On Ge Wu: Recovering the Way of the Great Learning.Huaiyu Wang - 2007 - Philosophy East and West 57 (2):204 - 226.
    By rethinking the meaning of a central idiom in the Great Learning, this essay intends to open up a new horizon for the hermeneutics of early Confucian thinking, which has little to do with metaphysics. Through a careful etymological study of ge wu and a dialogue between the Great Learning and Heidegger's phenomenology of human affection, I demonstrate the critical position of the human heart in early Chinese thinking. This new interpretation of early Confucian moral teachings also recovers an invigorating (...)
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  22. Law Is the Command of the Sovereign: H. L. A. Hart Reconsidered.Andrew Stumpff Morrison - 2016 - Ratio Juris 29 (3):364-384.
    This article presents a critical reevaluation of the thesis – closely associated with H.L.A. Hart, and central to the views of most recent legal philosophers – that the idea of state coercion is not logically essential to the definition of law. The author argues that even laws governing contracts must ultimately be understood as “commands of the sovereign, backed by force”. This follows in part from recognition that the “ sovereign ”, defined rigorously, at the highest level of abstraction, is (...)
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  23. The First Nine Months of Editing Wittgenstein - Letters From G.E.M. Anscombe and Rush Rhees to G.H. Von Wright.Christian Eric Erbacher & Sophia Victoria Krebs - 2015 - Nordic Wittgenstein Review 4 (1):195-231.
    The National Library of Finland and the Von Wright and Wittgenstein Archives at the University of Helsinki keep the collected correspondence of Georg Henrik von Wright, Wittgenstein’s friend and successor at Cambridge and one of the three literary executors of Wittgenstein’s Nachlass. Among von Wright’s correspondence partners, Elizabeth Anscombe and Rush Rhees are of special interest to Wittgenstein scholars as the two other trustees of the Wittgenstein papers. Thus, von Wright’s collections held in Finland promise to shed light on the (...)
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  24.  91
    H.-G. Gadamer, Idea dobra w dyskusji między Platonem a Arystotelesem, przełożył Zbigniew Nerczuk, Wydawnictwo Antyk, Kęty 2002, s. 143 (H.-G. Gadamer, Die Idee des guten zwischen Platon und Aristoteles).Zbigniew Nerczuk (ed.) - 2002 - Kęty: Wydawnictwo Antyk.
    Jest to wybór z pracy Gadamera "Idea dobra..." Zawiera Przedmowę, Zakres problemu, Rozdział I (Sokratejska wiedza i niewiedza) oraz Posłowie tłumacza. This is the opening part of the Polish translation of Gadamers' The idea of the good... with the Translator's afterword.
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  25.  34
    Three Concepts of Law: The Ambiguous Legacy of H.L.A. Hart.Brian Slattery - 1998 - Saskatchewan Law Review 61:323-39.
    The law presents itself as a body of meaning, open to discovery, interpretation, application, criticism, development and change. But what sort of meaning does the law possess? Legal theory provides three sorts of answers. The first portrays the law as a mode of communication through which law-makers convey certain standards or norms to the larger community. The law's meaning is that imparted by its authors. On this view, law is a vehicle, conveying a message from a speaker to an intended (...)
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  26. Unity in Aristotle's Metaphysics H 6.Evan Keeling - 2012 - Apeiron 45 (3).
    In this essay I argue that the central problem of Aristotle’s Metaphysics H (VIII) 6 is the unity of forms and that he solves this problem in just the way he solves the problem of the unity of composites – by hylomorphism. I also discuss the matter– form relationship in H 6, arguing that they have a correlative nature as the matter of the form and the form of the matter.
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  27. Embodied Demonstratives: A Reply to Wu.Christopher Mole - 2013 - Mind 122 (485):231-239.
    Although Wayne Wu correctly identifies a flaw in the way in which my 2009 article frames the debate about ‘zombie action’, he fails in his attempts to strengthen the case for thinking that our actions are under less conscious control than we usually imagine. His argument, like the arguments that my earlier paper addressed, can be blocked by allowing that an embodied demonstrative concept can contribute contents to a visual experience.
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  28. H.O.T. Theory, Concepts, and Synesthesia: A Reply to Adams and Shreve.Rocco J. Gennaro - 2016 - Symposion: Theoretical and Applied Inquiries in Philosophy and Social Sciences 3 (4):443-448.
    In response to Fred Adams and Charlotte Shreve’s (2016) paper entitled “What Can Synesthesia Teach Us about Higher Order Theories of Consciousness?”, previously published in Symposion, I argue that H.O.T. theory does have the resources to account for synesthesia and the specific worries that they advance in their paper, such as the relationship between concepts and experience and the ability to handle instances of ‘pop-out’ experiences.
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  29. On H. M. Oliver’s “Established Expectations and American Economic Policies”.Govind Persad - 2015 - Ethics 125 (3):829-832,.
    In this retrospective for Ethics, I discuss H.M. Oliver’s “Established Expectations and American Economic Policies.” This article, by a then-modestly-famous economist, has been ignored (no citations) since its 1940 publication. Yet it bears directly on a normative problem at the intersection of ethics and economics that challenges today’s policymakers but has received comparatively little philosophical attention: how should we balance potentially desirable institutional change against the disruption of established expectations? -/- Oliver details how the principle of fulfilling established expectations cuts (...)
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  30.  61
    "The Morality of Laughter" by F.H. Buckley. [REVIEW]Tim Crane - unknown
    Why is humour so hard to understand? Rather like attempts to explain how music can move us, attempts to explain why things are funny seem doomed from the outset. Discussions of humour typically distinguish three kinds of theory: the incongruity theory (we are amused by the incongruous), the relief theory (humour is an expression of relief in difficult situations) and the superiority theory (we laugh to express our sense of superiority over others). In the face of genuine humour, theories like (...)
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  31. W.V. Quine, Immanuel Kant Lectures, translated and introduced by H.G. Callaway.H. G. Callaway & W. V. Quine (eds.) - 2003 - Frommann-Holzboog.
    This book is a translation of W.V. Quine's Kant Lectures, given as a series at Stanford University in 1980. It provide a short and useful summary of Quine's philosophy. There are four lectures altogether: I. Prolegomena: Mind and its Place in Nature; II. Endolegomena: From Ostension to Quantification; III. Endolegomena loipa: The forked animal; and IV. Epilegomena: What's It all About? The Kant Lectures have been published to date only in Italian and German translation. The present book is filled out (...)
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  32.  50
    Review of The Complete Works of W. H. Auden: Prose: Volume VI, 1969–1973. [REVIEW]Subhasis Chattopadhyay - 2016 - Prabuddha Bharata or Awakened India 121 (7 (July)):576-77.
    This review shows how Auden was a philosopher of religion and therefore, this review calls for reassessing the poet Auden as a philosopher concerned with prayer and the necessity of the transcendent in life.
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  33. R V H [2015] A CriticalAnalysis.Sally Ramage - 2015 - Criminal Law News 80.
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  34.  22
    Bashar H. Malkawi, Regional Agreements and Regulatory Barriers to Trade in Services: Building Blocks to the Multilateral Foundation.Bashar H. Malkawi - 2019 - Journal of Business Law 34:251-265.
    Jordan agreed to extensive liberalization undertakings under the General Agreement on Trade in Services (“GATS”) that would open some sectors that were previously closed or restricted to foreign suppliers and investors. It undertook horizontal commitments in cross-border movement of individuals and commercial presence covering all types of services.
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  35. The Heroes of Aristophanes Cedric H. Whitman: Aristophanes and the Comic Hero. (Martin Classical Lectures, Xix.) Pp. Ix + 333. Cambridge, Mass.: Harvard University Press (London: Oxford University Press), 1964. Cloth, 48s. Net. [REVIEW]K. J. Dover - 1966 - The Classical Review 16 (02):159-161.
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  36. Karl Marx's Theory of History, a Defense by G. A. Cohen; Marx's Theory of History by William H. Shaw.Henry Laycock - 1980 - Canadian Journal of Philosophy 10 (2):335-356.
    "Capital is moved as much and as little by the degradation and final depopulation of the human race, as by the probable fall of the earth into the sun. Apres moi le deluge! is the watchword of every capitalist and of every capitalist nation" (Marx, CAPITAL Vol 1, 380-381).
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  37.  98
    Analysis of R V H 2014.Sally Ramage - 2017 - Criminal Law News 105:02-26.
    A case to be taken up by the Criminal Appeals Commission because the decision of the appeal court was flawed- a miscarriage of justice against Dr Stephen Hamilton, formerly, a most respected senior family general practitioner.
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  38. Gregory E. Kaebnick and Thomas H. Murray, Eds., Synthetic Biology and Morality: Artificial Life and the Bounds of Nature. [REVIEW]Mahesh Ananth - 2016 - Journal of Value Inquiry 50 (1):241-248.
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  39. D. H. MELLOR The Matter of Chance.Luke Glynn - 2011 - British Journal for the Philosophy of Science 62 (4):899-906.
    Though almost forty years have elapsed since its first publication, it is a testament to the philosophical acumen of its author that 'The Matter of Chance' contains much that is of continued interest to the philosopher of science. Mellor advances a sophisticated propensity theory of chance, arguing that this theory makes better sense than its rivals (in particular subjectivist, frequentist, logical and classical theories) of ‘what professional usage shows to be thought true of chance’ (p. xi) – in particular ‘that (...)
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  40. Walter Pater as Oxford Hegelian: Plato and Platonism_ and T. H. Green’s _Prolegomena to Ethics.Kit Andrews - 2011 - Journal of the History of Ideas 72 (3):437-459.
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  41. Familiar Objects and Their Shadows. By Crawford L. Elder. (Cambridge UP, 2011. Pp. Xi + 210. Price £50.00, $85.00 H/B.). [REVIEW]Nathan Wildman - 2012 - Philosophical Quarterly 62 (246):195-197.
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  42.  88
    Angela N. H. Creager, Elizabeth Lunbeck and M. Norton Wise , Science Without Laws: Model Systems, Cases, Exemplary Narratives. Durham, NC and London: Duke University Press, 2007. ISBN 978-0-8223-4068-3. £12.99. [REVIEW]Jacob Stegenga - 2009 - British Journal for the History of Science 42 (4):626.
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  43.  37
    The Complexity of H-Wave Amplitude Fluctuations and Their Bilateral Cross-Covariance Are Modified According to the Previous Fitness History of Young Subjects Under Track Training.Maria E. Ceballos-Villegas, Juan J. Saldaña Mena, Ana L. Gutierrez Lozano, Francisco J. Sepúlveda-Cañamar, Nayeli Huidobro, Elias Manjarrez & Joel Lomeli - 2017 - Frontiers in Human Neuroscience 11.
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  44. Review of H Kragh (1996) Cosmology and Controversy. [REVIEW]Graham Oppy - 1999 - Australasian Journal of Philosophy 77 (3):387-9.
    Short review of Helge Kragh's excellent book on the contest between big bang and steady state theories of the universe.
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  45. Caselaw H V R: A Final Analysis.Sally Ramage - manuscript
    This is a case that should go to the European Court of Human Rights. A decent, senior qualified family doctor was accused by his mentally ill daughter of sex abuse. Without real evidence except for what the girl told another mentally ill patient at a psychiatric hospital she stayed at for several years, and wit just two witnesses, one a younger child wo saw none of the accused offences, and the other parent, struck off the General Medical Council Register for (...)
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  46.  86
    Attention: Philosophical and Psychological Essays, Edited by Christopher Mole, Declan Smithies, and Wayne Wu.Rocco J. Gennaro - 2014 - Mind 123 (490):623-628.
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  47.  64
    Mario Ricciardi, Diritto e natura. H.L.A. Hart e la filosofia di Oxford. [REVIEW]Lorenzo Greco - 2009 - Mondoperaio 8:89-91.
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  48.  78
    The Hierarchical Model and H. L. A. Hart's Concept of Law.Massimo La Torre - 2013 - Revus 21:141-161.
    Law is traditionally related to the practice of command and hierarchy. It seems that a legal rule should immediately establish a relation between a superior and an inferior. This hierarchical and authoritharian view might however be challenged once the phenomenology of the rule is considered from the internal point of view, that is, from the stance of those that can be said to “use” rather than to “suffer” the rules themselves. A practice oriented approach could in this way open up (...)
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  49. Review: Reasons From Within: Desires and Values – Alan H. Goldman. [REVIEW]Neil Sinclair - 2011 - Philosophical Quarterly 61 (243):427-429.
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  50.  22
    Review of Mark H. McCormack, The Terrible Truth About Lawyers. [REVIEW]Edmund Byrne - 1988 - Journal of Legal Education 38 (3):481-483.
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