Results for 'Daniel J. Smith'

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Daniel J. Smith
University of Memphis
  1.  76
    Survey-Based Naming Conventions for Use in OBO Foundry Ontology Development.Schober Daniel, Barry Smith, Lewis Suzanna, E. Kusnierczyk, Waclaw Lomax, Jane Mungall, Chris Taylor, F. Chris, Rocca-Serra Philippe & Sansone Susanna-Assunta - 2009 - BMC Bioinformatics 10 (1):125.
    A wide variety of ontologies relevant to the biological and medical domains are available through the OBO Foundry portal, and their number is growing rapidly. Integration of these ontologies, while requiring considerable effort, is extremely desirable. However, heterogeneities in format and style pose serious obstacles to such integration. In particular, inconsistencies in naming conventions can impair the readability and navigability of ontology class hierarchies, and hinder their alignment and integration. While other sources of diversity are tremendously complex and challenging, agreeing (...)
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  2.  8
    Foucault sobre ética y subjetividad: ‘cuidado de sí’ y ‘estética de la existencia.Daniel J. Smith - 2017 - Dorsal. Revista de Estudios Foucaultianos 2:301-321.
    Este ensayo considera la estructura del sujeto ético que se encuentra en los últimos trabajos de Foucault sobre ética, y da cuenta de sus dos conceptos éticos fundamentales: “cuidado de sí” y “estética de la existencia”. El “cuidado de sí”, se argumenta, da a Foucault una manera de conceptualizar la ética que no depende de categorías jurídicas, y que no concibe al sujeto ético en el modelo de la sustancia. “El cuidado de sí” conlleva una comprensión del sujeto ético como (...)
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  3.  78
    The Ontology for Biomedical Investigations.Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert, Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel & Jie Zheng - 2016 - PLoS ONE 11 (4):e0154556.
    The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI re-uses ontologies that provide a representation of biomedical knowledge from the Open Biological and Biomedical Ontologies (OBO) project and adds the ability to describe how this knowledge was derived. We here describe the state of OBI and several applications that are using it, such as adding semantic expressivity to (...)
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  4. National Center for Biomedical Ontology: Advancing Biomedicine Through Structured Organization of Scientific Knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.
    The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create (...)
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  5. The Conditions of the Question: What Is Philosophy?Gilles Deleuze, Daniel W. Smith & Arnold I. Davidson - 1991 - Critical Inquiry 17 (3):471-478.
    Perhaps the question “What is philosophy?” can only be posed late in life, when old age has come, and with it the time to speak in concrete terms. It is a question one poses when one no longer has anything to ask for, but its consequences can be considerable. One was asking the question before, one never ceased asking it, but it was too artificial, too abstract; one expounded and dominated the question, more than being grabbed by it. There are (...)
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  6. Practical Knowledge: Outlines of a Theory of Traditions and Skills.J. C. Nyíri & Barry Smith (eds.) - 1988 - Croom Helm.
    A series of papers on different aspects of practical knowledge by Roderick Chisholm, Rudolf Haller, J. C. Nyiri, Eva Picardi, Joachim Schulte Roger Scruton, Barry Smith and Johan Wrede.
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  7. Essays on Deleuze.Daniel W. Smith - 2012 - Edinburgh University Press.
    Gilles Deleuze was one of the most influential philosophers of the twentieth-century, and Smith is widely recognized to be one of his most penetrating interpreters, as well as an important philosophical voice in his own right. Combining his most important pieces over the last fifteen years along with two new essays, this book is Smith 's definitive treatise on Deleuze. The essays are divided into four sections, which cover Deleuze's use of the history of philosophy, an overview of (...)
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  8.  91
    Interoperability of Disparate Engineering Domain Ontologies Using Basic Formal Ontology.Thomas J. Hagedorn, Barry Smith, Sundar Krishnamurty & Ian R. Grosse - 2019 - Journal of Engineering Design 31.
    As engineering applications require management of ever larger volumes of data, ontologies offer the potential to capture, manage, and augment data with the capability for automated reasoning and semantic querying. Unfortunately, considerable barriers hinder wider deployment of ontologies in engineering. Key among these is lack of a shared top-level ontology to unify and organise disparate aspects of the field and coordinate co-development of orthogonal ontologies. As a result, many engineering ontologies are limited to their scope, and functionally difficult to extend (...)
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  9.  13
    An Improved Ontological Representation of Dendritic Cells as a Paradigm for All Cell Types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  10. Comment: Minimal Conditions for the Simplest Form of Self-Consciousness.Adrian J. T. Smith - 2010 - In Thomas Fuchs, Heribert Sattel & Peter Henningsen (eds.), The embodied self: Dimensions, coherence, disorders. Schattauer.
    Commentary on: Olaf Blanke, Thomas Metzinger, Full-body illusions and minimal phenomenal selfhood, Trends in Cognitive Sciences, Volume 13, Issue 1, January 2009, Pages 7-13, ISSN 1364-6613, DOI: 10.1016/j.tics.2008.10.003.
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  11. Assessing Ontologies: The Question of Human Origins and Its Ethical Significance.Daniel Cohnitz & Barry Smith - 2003 - In E. Runggaldier & C. Kanzian (eds.), Persons: An Interdisciplinary Approach. öbv&hpt. pp. 243--259.
    In their paper “Sixteen Days” Barry Smith and Berit Brogaard try to answer the question: when does a human being begin to exist? In this paper we will address some methodological issues connected with this exercise in ontology. We shall begin by sketching the argument of “Sixteen Days”. We shall then attempt to characterize what is special about the ontological realism of “Sixteen Days” as contrasted to the linguistic constructivism which represents the more dominant current in contemporary analytic philosophy. (...)
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  12. A Product Life Cycle Ontology for Additive Manufacturing.Munira Mohd Ali, Rahul Rai, J. Neil Otte & Barry Smith - 2019 - Computers in Industry 105:191-203.
    The manufacturing industry is evolving rapidly, becoming more complex, more interconnected, and more geographically distributed. Competitive pressure and diversity of consumer demand are driving manufacturing companies to rely more and more on improved knowledge management practices. As a result, multiple software systems are being created to support the integration of data across the product life cycle. Unfortunately, these systems manifest a low degree of interoperability, and this creates problems, for instance when different enterprises or different branches of an enterprise interact. (...)
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  13.  23
    The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Ramona Lynn Walls, Laurel Cooper, Justin Lee Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis William Stevenson & Pankaj Jaiswal - 2019 - Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...)
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  14. Discussion of “Biomedical Informatics: We Are What We Publish”.Geissbuhler Antoine, W. E. Hammond, A. Hasman, R. Hussein, R. Koppel, C. A. Kulikowski, V. Maojo, F. Martin-Sanchez, P. W. Moorman, Moura La, F. G. De Quiros, M. J. Schuemle, Barry Smith & J. Talmon - 2013 - Methods of Information in Medicine 52 (6):547-562.
    This article is part of a For-Discussion-Section of Methods of Information in Medicine about the paper "Biomedical Informatics: We Are What We Publish", written by Peter L. Elkin, Steven H. Brown, and Graham Wright. It is introduced by an editorial. This article contains the combined commentaries invited to independently comment on the Elkin et al. paper. In subsequent issues the discussion can continue through letters to the editor.
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  15.  53
    An Evolutionary Approach to Realism-Based Adverse Event Representations.Werner Ceusters, Maria Capolupo, G. De Moor, J. Devlies & Barry Smith - 2011 - Methods of Information in Medicine 50 (1):62-73.
    One way to detect, monitor and prevent adverse events with the help of Information Technology is by using ontologies capable of representing three levels of reality: what is the case, what is believed about reality, and what is represented. We report on how Basic Formal Ontology and Referent Tracking exhibit this capability and how they are used to develop an adverse event ontology and related data annotation scheme for the European ReMINE project.
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  16.  61
    Formal Ontology for Biomedical Knowledge Systems Integration.J. M. Fielding, J. Simon & Barry Smith - 2004 - Proceedings of Euromise:12-17.
    The central hypothesis of the collaboration between Language and Computing (L&C) and the Institute for Formal Ontology and Medical Information Science (IFOMIS) is that the methodology and conceptual rigor of a philosophically inspired formal ontology will greatly benefit software application ontologies. To this end LinKBase®, L&C’s ontology, which is designed to integrate and reason across various external databases simultaneously, has been submitted to the conceptual demands of IFOMIS’s Basic Formal Ontology (BFO). With this, we aim to move beyond the level (...)
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  17.  70
    CARO: The Common Anatomy Reference Ontology.Melissa Haendel, Fabian Neuhaus, David Osumi-Sutherland, Paula M. Mabee, José L. V. Mejino Jr, Chris J. Mungall & Barry Smith - 2008 - In Anatomy Ontologies for Bioinformatics: Principles and Practice. Springer. pp. 327-349.
    The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies. CARO has a structural axis of classification based on the top-level nodes of the Foundational Model of Anatomy. CARO will complement the developmental process sub-ontology of the GO Biological Process ontology, using it to ensure the coherent treatment of developmental stages, and to provide a common framework for the model organism communities (...)
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  18.  36
    Six Questions on the Construction of Ontologies in Biomedicine.Anand Kumar, A. Burgun, W. Ceusters, J. Cimino, J. Davis, P. Elkin, I. Kalet, A. Rector, J. Rice, J. Rogers, Barry Smith & Others - 2005 - Report of the AMIA Working Group on Formal Biomedical Knowledge Representation 1.
    (Report assembled for the Workshop of the AMIA Working Group on Formal Biomedical Knowledge Representation in connection with AMIA Symposium, Washington DC, 2005.) Best practices in ontology building for biomedicine have been frequently discussed in recent years. However there is a range of seemingly disparate views represented by experts in the field. These views not only reflect the different uses to which ontologies are put, but also the experiences and disciplinary background of these experts themselves. We asked six questions related (...)
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  19.  65
    Sense and Literality: Why There Are No Metaphors in Deleuze’s Philosophy.Daniel W. Smith - 2019 - In Dorothea Olkowski & Eftichis Pirovolakis (eds.), Deleuze and Guattari's Philosophy of Freedom: Freedom’s Refrains. Edinburgh: Edinburgh University Press. pp. 44-67.
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  20. An Ontological Approach to Representing the Product Life Cycle.J. Neil Otte, Dimitris Kiritsi, Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Ron Rudnicki, Rahul Rai & Barry Smith - 2019 - Applied Ontology 14 (2):1-19.
    The ability to access and share data is key to optimizing and streamlining any industrial production process. Unfortunately, the manufacturing industry is stymied by a lack of interoperability among the systems by which data are produced and managed, and this is true both within and across organizations. In this paper, we describe our work to address this problem through the creation of a suite of modular ontologies representing the product life cycle and its successive phases, from design to end of (...)
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  21.  59
    Immanence and Desire: Deleuze and the Political.Daniel W. Smith - 2019 - Stasis 7 (1):124-138.
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  22.  52
    Raymond Ruyer and the Metaphysics of Absolute Forms.Daniel W. Smith - 2017 - Parrhesia 27:116-128.
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  23.  50
    7000 B. C.: Apparatus of Capture.Daniel W. Smith - 2018 - In Henry Somers-Hall, James Williams & Jeffrey Bell (eds.), A Thousand Plateaus and Philosophy. Edinburgh: Edinburgh University Press. pp. 223-241.
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  24. Deleuze and the Question of Desire: Toward an Immanent Theory of Ethics.Daniel W. Smith - 2007 - Parrhesia 2:66-78.
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  25.  47
    Against Social Evolution: Deleuze and Guattari's Social Topology.Daniel W. Smith - 2019 - In Michael James Bennett & Tano S. Posteraro (eds.), Deleuze and Evolutionary Theory. Edinburgh: Edinburgh University Press. pp. 141-158.
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  26.  40
    The Pure Form of Time and the Powers of the False.Daniel W. Smith - 2019 - Tijdschrift Voor Filosofie 81 (1):29-51.
    This paper explores the relation of the theory of time and the theory of truth in Deleuze’s philosophy. According to Deleuze, a mutation in our conception of time occurred with Kant. In antiquity, time had been subordinated to movement, it was the measure or the “number of movement” (Aristotle). In Kant, this relation is inverted: time is no longer subordinated to movement but assumes an independence and autonomy of its own for the first time. In Deleuze’s phrasing, time becomes the (...)
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  27. The Concept of the Simulacrum: Deleuze and the Overturning of Platonism.Daniel W. Smith - 2005 - Continental Philosophy Review 38 (1-2):89-123.
    This article examines Gilles Deleuze’s concept of the simulacrum, which Deleuze formulated in the context of his reading of Nietzsche’s project of “overturning Platonism.” The essential Platonic distinction, Deleuze argues, is more profound than the speculative distinction between model and copy, original and image. The deeper, practical distinction moves between two kinds of images or eidolon, for which the Platonic Idea is meant to provide a concrete criterion of selection “Copies” or icons (eikones) are well-grounded claimants to the transcendent Idea, (...)
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  28.  29
    Deleuze, Technology, and Thought.Daniel W. Smith - 2018 - Tamkang Review 49 (1):33-52.
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  29. Mathematics and the Theory of Multiplicities: Badiou and Deleuze Revisited.Daniel W. Smith - 2003 - Southern Journal of Philosophy 41 (3):411-449.
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  30.  27
    The Conflict of the Faculties in Hume: The Position of "Of the Standard of Taste" in the Principles of Human Nature.Daniel W. Smith - manuscript
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  31. Flow, Code and Stock: A Note on Deleuze's Political Philosophy.Daniel W. Smith - 2011 - Deleuze and Guatarri Studies 5 (Suppl):36-55.
    In Anti-Oedipus, Deleuze and Guattari claim that a general theory of society must be a generalised theory of flows. This is hardly a straightforward claim, and this paper attempts to examine the grounds for it. Why should socio-political theory be based on a theory of flows rather than, say, a theory of the social contract, or a theory of the State, or the questions of legitimation or revolution, or numerous other possible candidates? The concept of flow (and the related notions (...)
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  32.  42
    Deleuze’s Theory of Sensation: Overcoming the Kantian Duality.Daniel W. Smith - 1996 - In Paul Patton (ed.), Deleuze: A Critical Reader. New York: Blackwell. pp. 29-56.
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  33.  22
    Pierre Klossowski: From Theatrical Theology to Counter-Utopia.Daniel W. Smith - 2017 - In Nicolae Morar, Thomas Nail & Daniel W. Smith (eds.), Pierre Klossowski, Living Currency. London: Bloomsbury. pp. 1-40.
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  34.  37
    Axiomatics and Problematics as Two Modes of Formalisation: Deleuze's Epistemology of Mathematics'.Daniel W. Smith - 2006 - In Simon B. Duffy (ed.), Virtual Mathematics: The Logic of Difference. Clinamen. pp. 145--168.
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  35.  20
    André Leroi-Gourhan.Daniel W. Smith - 2019 - In Graham Jones & Jon Roffe (eds.), Deleluze's Philosophical Lineage II. Edinburgh: Edinburgh University Press. pp. 255-274.
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  36.  83
    Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain.Barry Smith, Waclaw Kusnierczyk, Daniel Schober, & Werner Ceusters - 2006 - In Proceedings of KR-MED, CEUR, vol. 222. pp. 57-65.
    Ontology is a burgeoning field, involving researchers from the computer science, philosophy, data and software engineering, logic, linguistics, and terminology domains. Many ontology-related terms with precise meanings in one of these domains have different meanings in others. Our purpose here is to initiate a path towards disambiguation of such terms. We draw primarily on the literature of biomedical informatics, not least because the problems caused by unclear or ambiguous use of terms have been there most thoroughly addressed. We advance a (...)
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  37.  19
    Nietzsche and the Vicious Circle.Pierre Klossowski & Daniel W. Smith - 1999 - Journal of Nietzsche Studies 18:84-89.
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  38. Nauk O Univoknostf: Deleuzova ontologija imanence.Daniel W. Smith - 2001 - Filozofski Vestnik 22 (1):163-179.
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  39.  15
    Review of Raymond Ruyer, Neofinalism. [REVIEW]Daniel W. Smith - 2017 - Parrhesia: A Journal of Critical Philosophy 27:116-128.
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  40. The Conditions of the New.Daniel W. Smith - 2007 - Deleuze and Guatarri Studies 1 (1):1-21.
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  41. Deleuze on Leibniz : Difference, Continuity, and the Calculus.Daniel W. Smith - 2005 - In Stephen H. Daniel (ed.), Current Continental Theory and Modern Philosophy. Northwestern University Press.
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  42. Deleuze, Hegel, and the Post-Kantian Tradition.Daniel W. Smith - 2000 - Philosophy Today 44 (Supplement):119-131.
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  43. A Life of Pure Immanence: Deleuze's "Critque Et Clinique" Project.Daniel W. Smith - 1997 - Philosophy Today 41 (Supplement):168-179.
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  44.  26
    Metaphysics and Ontology.Daniel W. Smith - 2009 - In Beth Lord & John Mullarkey (eds.), Continuum Companion to Continental Philosophy. London: Continuum. pp. 55-68.
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  45. Deleuze and Derrida, Immanence and Transcendence.Daniel W. Smith - 2003 - In Paul Patton & John Protevi (eds.), Between Deleuze and Derrida. London: Continuum. pp. 46-66.
    This paper will attempt to assess the primary differences between what I take to be the two primary philosophical "traditions" in contemporary French philosophy, using Derrida (transcendence) and Deleuze (immanence) as exemplary representatives. The body of the paper will examine the use of these terms in three different areas of philosophy on which Derrida and Deleuze have both written: subjectivity, ontology, and epistemology. (1) In the field of subjectivity, the notion of the subject has been critiqued in two manners, either (...)
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  46.  13
    Имманентность и желание: Делёз и политическое.Daniel W. Smith - 2019 - Stasis 7 (1):140-156.
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  47. Towards an Ontology of Pain.Barry Smith, Werner Ceusters, Louis J. Goldberg & Richard Ohrbach - 2011 - In Proceedings of the Conference on Ontology and Analytical Metaphysics. Keio University Press.
    We present an ontology of pain and of other pain-related phenomena, building on the definition of pain provided by the International Association for the Study of Pain (IASP). Our strategy is to identify an evolutionarily basic canonical pain phenomenon, involving unpleasant sensory and emotional experience based causally in localized tissue damage that is concordant with that experience. We then show how different variant cases of this canonical pain phenomenon can be distinguished, including pain that is elevated relative to peripheral trauma, (...)
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  48.  24
    "What I Hear is Thinking Too": Deleuze and Guattari Go Pop.Daniel W. Smith & Timothy S. Murphy - 2001 - Echo 3 (1).
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  49. Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: The MIBBI Project.Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape - 2008 - Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data sets (...)
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  50.  23
    Deleuze, Kant, and the Transcendental Field.Daniel W. Smith - 2015 - In Craig Lundy & Daniela Voss (eds.), At the Edges of Thought: Deleuze and Post-Kantian Philosophy. Edinburgh: Edinburgh University Press. pp. 25-43.
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