Results for 'Ontology of host-microbiome interactions'

1000+ found
Order:
  1.  53
    OHMI: The Ontology of Host-Microbiome Interactions.Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko & Jihad S. Obeid - 2019 - Journal of Biomedical Semantics 10 (1):1-14.
    Host-microbiome interactions (HMIs) are critical for the modulation of biological processes and are associated with several diseases, and extensive HMI studies have generated large amounts of data. We propose that the logical representation of the knowledge derived from these data and the standardized representation of experimental variables and processes can foster integration of data and reproducibility of experiments and thereby further HMI knowledge discovery. A community-based Ontology of Host-Microbiome Interactions (OHMI) was developed following the OBO (...)
    Download  
     
    Export citation  
     
    Bookmark  
  2. The Hologenome Concept of Evolution: A Philosophical and Biological Study.Javier Suárez - 2019 - Dissertation, University of Exeter
    The hologenome concept of evolution is a hypothesis about the evolution of animals and plants. It asserts that the evolution of animals and plants was partially triggered by their interactions with their symbiotic microbiomes. In that vein, the hologenome concept posits that the holobiont (animal host + symbionts of the microbiome) is a unit of selection. -/- The hologenome concept has been severely criticized on the basis that selection on holobionts would only be possible if there were a tight (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  3.  73
    Methodology and Ontology in Microbiome Research.John Huss - 2014 - Biological Theory 9 (4):392-400.
    Research on the human microbiome has gen- erated a staggering amount of sequence data, revealing variation in microbial diversity at the community, species (or phylotype), and genomic levels. In order to make this complexity more manageable and easier to interpret, new units—the metagenome, core microbiome, and entero- type—have been introduced in the scientific literature. Here, I argue that analytical tools and exploratory statisti- cal methods, coupled with a translational imperative, are the primary drivers of this new ontology. By reducing (...)
    Download  
     
    Export citation  
     
    Bookmark   5 citations  
  4. A Plant Disease Extension of the Infectious Disease Ontology.Ramona Walls, Barry Smith, Elser Justin, Goldfain Albert & W. Stevenson Dennis - 2012 - In Proceedings of the Third International Conference on Biomedical Ontology (CEUR 897). pp. 1-5.
    Plants from a handful of species provide the primary source of food for all people, yet this source is vulnerable to multiple stressors, such as disease, drought, and nutrient deficiency. With rapid population growth and climate uncertainty, the need to produce crops that can tolerate or resist plant stressors is more crucial than ever. Traditional plant breeding methods may not be sufficient to overcome this challenge, and methods such as highOthroughput sequencing and automated scoring of phenotypes can provide significant new (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  5.  73
    VO: Vaccine Ontology.Yongqun He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall, Barry Smith & Others - 2009 - In ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo:
    Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  6. National Center for Biomedical Ontology: Advancing Biomedicine Through Structured Organization of Scientific Knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.
    The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) (...)
    Download  
     
    Export citation  
     
    Bookmark   4 citations  
  7. Explaining the Behaviour of Random Ecological Networks: The Stability of the Microbiome as a Case of Integrative Pluralism.Roger Deulofeu, Javier Suárez & Alberto Pérez-Cervera - forthcoming - Synthese:1-23.
    Explaining the behaviour of ecosystems is one of the key challenges for the biological sciences. Since 2000, new-mechanicism has been the main model to account for the nature of scientific explanation in biology. The universality of the new-mechanist view in biology has been however put into question due to the existence of explanations that account for some biological phenomena in terms of their mathematical properties (mathematical explanations). Supporters of mathematical explanation have argued that the explanation of the behaviour of ecosystems (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  8. The Deep Metaphysics of Quantum Gravity: The Seventeenth Century Legacy and an Alternative Ontology Beyond Substantivalism and Relationism.Edward Slowik - 2013 - Studies in the History and Philosophy of Modern Physics 44 (4):490-499.
    This essay presents an alternative to contemporary substantivalist and relationist interpretations of quantum gravity hypotheses by means of an historical comparison with the ontology of space in the seventeenth century. Utilizing differences in the spatial geometry between the foundational theory and the theory derived from the foundational, in conjunction with nominalism and platonism, it will be argued that there are crucial similarities between seventeenth century and contemporary theories of space, and that these similarities reveal a host of underlying conceptual (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  9. A Semantic Approach for Knowledge Capture of microRNA-Target Gene Interactions.Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang & Zixing Liu - 2015 - In IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015),. pp. 975-982.
    Research has indicated that microRNAs (miRNAs), a special class of non-coding RNAs (ncRNAs), can perform important roles in different biological and pathological processes. miRNAs’ functions are realized by regulating their respective target genes (targets). It is thus critical to identify and analyze miRNA-target interactions for a better understanding and delineation of miRNAs’ functions. However, conventional knowledge discovery and acquisition methods have many limitations. Fortunately, semantic technologies that are based on domain ontologies can render great assistance in this regard. In (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  10.  59
    OBCS: The Ontology of Biological and Clinical Statistics.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred Hero, Barry Smith & Yongqun He - 2014 - Proceedings of the Fifth International Conference on Biomedical Ontology 1327:65.
    Statistics play a critical role in biological and clinical research. To promote logically consistent representation and classification of statistical entities, we have developed the Ontology of Biological and Clinical Statistics (OBCS). OBCS extends the Ontology of Biomedical Investigations (OBI), an OBO Foundry ontology supported by some 20 communities. Currently, OBCS contains 686 terms, including 381 classes imported from OBI and 147 classes specific to OBCS. The goal of this paper is to present OBCS for community critique and (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  11. Analytic Metaphysics Versus Naturalized Metaphysics: The Relevance of Applied Ontology.Baptiste Le Bihan & Adrien Barton - 2018 - Erkenntnis:1-17.
    The relevance of analytic metaphysics has come under criticism: Ladyman & Ross, for instance, have suggested do discontinue the field. French & McKenzie have argued in defense of analytic metaphysics that it develops tools that could turn out to be useful for philosophy of physics. In this article, we show first that this heuristic defense of metaphysics can be extended to the scientific field of applied ontology, which uses constructs from analytic metaphysics. Second, we elaborate on a parallel by (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  12. Molecular Interactions. On the Ambiguity of Ordinary Statements in Biomedical Literature.Stefan Schulz & Ludger Jansen - 2009 - Applied Ontology (4):21-34.
    Statements about the behavior of biochemical entities (e.g., about the interaction between two proteins) abound in the literature on molecular biology and are increasingly becoming the targets of information extraction and text mining techniques. We show that an accurate analysis of the semantics of such statements reveals a number of ambiguities that have to be taken into account in the practice of biomedical ontology engineering: Such statements can not only be understood as event reporting statements, but also as ascriptions (...)
    Download  
     
    Export citation  
     
    Bookmark   4 citations  
  13.  84
    Logic and Ontology of Language.Urszula Wybraniec-Skardowska - 2019 - In Bartłomiej Skowron (ed.), Contemporary Polish Ontology. Berlin/Boston: DE GRUYTER, MOUTON. pp. 109-132.
    The main purpose of the paper is to outline the formal-logical, general theory of language treated as a particular ontological being. The theory itself is called the ontology of language, because it is motivated by the fact that the language plays a special role: it reflects ontology and ontology reflects the world. Language expressions are considered to have a dual ontological status. They are understood as either concretes, that is tokens – material, physical objects, or types – (...)
    Download  
     
    Export citation  
     
    Bookmark  
  14.  39
    The stability of traits conception of the hologenome: An evolutionary account of holobiont individuality.Javier Suárez - 2020 - History and Philosophy of the Life Sciences 42 (1):1-27.
    Bourrat and Griffiths :33, 2018) have recently argued that most of the evidence presented by holobiont defenders to support the thesis that holobionts are evolutionary individuals is not to the point and is not even adequate to discriminate multispecies evolutionary individuals from other multispecies assemblages that would not be considered evolutionary individuals by most holobiont defenders. They further argue that an adequate criterion to distinguish the two categories is fitness alignment, presenting the notion of fitness boundedness as a criterion that (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark   1 citation  
  15. A Formal Ontology of Artefacts.Gilles Kassel - 2010 - Applied Ontology 5 (3):223-246.
    This article presents a formal ontology which accounts for the general nature of artefacts. The objective is to help structure application ontologies in areas where specific artefacts are present - in other words, virtually any area of activity. The conceptualization relies on recent philosophical and psychological research on artefacts, having resulted in a largely consensual theoretical basis. Furthermore, this ontology of artefacts extends the foundational DOLCE ontology and supplements its axiomatization. The conceptual primitives are as follows: artificial (...)
    Download  
     
    Export citation  
     
    Bookmark   4 citations  
  16.  73
    The Ontology of Number.Jeremy Horne - manuscript
    What is a number? Answering this will answer questions about its philosophical foundations - rational numbers, the complex numbers, imaginary numbers. If we are to write or talk about something, it is helpful to know whether it exists, how it exists, and why it exists, just from a common-sense point of view [Quine, 1948, p. 6]. Generally, there does not seem to be any disagreement among mathematicians, scientists, and logicians about numbers existing in some way, but currently, in the mainstream (...)
    Download  
     
    Export citation  
     
    Bookmark  
  17. A Proposal for a Bohmian Ontology of Quantum Gravity.Antonio Vassallo & Michael Esfeld - 2013 - Foundations of Physics (1):1-18.
    The paper shows how the Bohmian approach to quantum physics can be applied to develop a clear and coherent ontology of non-perturbative quantum gravity. We suggest retaining discrete objects as the primitive ontology also when it comes to a quantum theory of space-time and therefore focus on loop quantum gravity. We conceive atoms of space, represented in terms of nodes linked by edges in a graph, as the primitive ontology of the theory and show how a non-local (...)
    Download  
     
    Export citation  
     
    Bookmark   6 citations  
  18. A Proposal for a Dualistic Ontology of Art.Simon Fokt - 2013 - Sztuka I Filozofia (42):29-47.
    While pluralism in ontology of art improves on various monistic views, through its eclectic approach it lost a lot of their simplicity, parsimony, unity and intuitiveness. The dualistic theory presented in this paper offers an alternative – it shares the advantages of the monistic views while retaining the wide scope of pluralism, and thus should be preferred for methodological reasons. On this view all artworks are at the same time abstract universals which are called recipes, and particular physical objects (...)
    Download  
     
    Export citation  
     
    Bookmark  
  19.  91
    Organisms, activity, and being: on the substance of process ontology.Christopher J. Austin - 2020 - European Journal for Philosophy of Science 10 (2):1-21.
    According to contemporary ‘process ontology’, organisms are best conceptualised as spatio-temporally extended entities whose mereological composition is fundamentally contingent and whose essence consists in changeability. In contrast to the Aristotelian precepts of classical ‘substance ontology’, from the four-dimensional perspective of this framework, the identity of an organism is grounded not in certain collections of privileged properties, or features which it could not fail to possess, but in the succession of diachronic relations by which it persists, or ‘perdures’ as (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark  
  20. Ontology-Based Fusion of Sensor Data and Natural Language.Erik Thomsen & Barry Smith - 2018 - Applied Ontology 13 (4):295-333.
    We describe a prototype ontology-driven information system (ODIS) that exploits what we call Portion of Reality (POR) representations. The system takes both sensor data and natural language text as inputs and composes on this basis logically structured POR assertions. The goal of our prototype is to represent both natural language and sensor data within a single framework that is able to support both axiomatic reasoning and computation. In addition, the framework should be capable of discovering and representing new kinds (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  21. Toward an Ontology of Commercial Exchange.Jonathan Vajda, Eric Merrell & Barry Smith - 2019 - In Proceedings of the Joint Ontology Workshops (JOWO), Graz.
    In this paper we propose an Ontology of Commercial Exchange (OCE) based on Basic Formal Ontology. OCE is designed for re-use in the Industrial Ontologies Foundry (IOF) and in other ontologies addressing different aspects of human social behavior involving purchasing, selling, marketing, and so forth. We first evaluate some of the design patterns used in the Financial Industry Business Ontology (FIBO) and Product Types Ontology (PTO). We then propose terms and definitions that we believe will improve (...)
    Download  
     
    Export citation  
     
    Bookmark  
  22. From Ontology of Interaction to Semiotics of Education.Eetu Pikkarainen - 2013 - In K. Tirri, E. Hanhimäki & E. Kuusisto (eds.), Interaction in Educational Domains. Sense Publishers. pp. 51-62.
    In this article I try to show that the most deep level ontology can have rich meaning for our understanding of such practical and everyday phenomena as education and interaction. With this deep level ontology I mean the problem of universals. Starting from famous traditional stances of realism and nominalism, which both are for the modern theories of growth and Bildung, I continue to the third and more recently developed ontological theory, trope theory according to which the properties (...)
    Download  
     
    Export citation  
     
    Bookmark   3 citations  
  23. In Pursuit of the Functional Definition of a Mind: The Inevitability of the Language Ontology.Vitalii Shymko - 2018 - Psycholinguistics 23 (1):327-346.
    In this article, the results of conceptualization of the definition of mind as an object of interdisciplinary applied research are described. The purpose of the theoretical analysis is to generate a methodological discourse suitable for a functional understanding of the mind in the context of the problem of natural language processing as one of the components of developments in the field of artificial intelligence. The conceptual discourse was realized with the help of the author's method of structural-ontological analysis, and developed (...)
    Download  
     
    Export citation  
     
    Bookmark   5 citations  
  24. Foundation for a Realist Ontology of Cognitive Processes.David Kasmier, David Limbaugh & Barry Smith - 2019 - In Proceedings of the International Conference on Biomedical Ontology (ICBO), University at Buffalo, NY.
    What follows is a first step towards an ontology of conscious mental processes. We provide a theoretical foundation and characterization of conscious mental processes based on a realist theory of intentionality and using BFO as our top-level ontology. We distinguish three components of intentional mental process: character, directedness, and objective referent, and describe several features of the process character and directedness significant to defining and classifying mental processes. We arrive at the definition of representational mental process as a (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  25. The Poverty of Musical Ontology.James O. Young - 2014 - Journal of Music and Meaning 13:1-19.
    Aaron Ridley posed the question of whether results in the ontology of musical works would have implications for judgements about the interpretation, meaning or aesthetic value of musical works and performances. His arguments for the conclusion that the ontology of musical works have no aesthetic consequences are unsuccessful, but he is right in thinking (in opposition to Andrew Kania and others) that ontological judgements have no aesthetic consequences. The key to demonstrating this conclusion is the recognition that ontological (...)
    Download  
     
    Export citation  
     
    Bookmark  
  26. The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2020 - In OSF Preprints. Center for Open Science.
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. (...)
    Download  
     
    Export citation  
     
    Bookmark  
  27. The Relevance of Philosophical Ontology to Information and Computer Science.Barry Smith - 2014 - In Ruth Hagengruber & Uwe Riss (eds.), Philosophy, Computing and Information Science. Chatto & Pickering. pp. 75-83.
    The discipline of ontology has enjoyed a checkered history since 1606, with a significant expansion in recent years. We focus here on those developments in the recent history of philosophy which are most relevant to the understanding of the increased acceptance of ontology, and especially of realist ontology, as a valuable method also outside the discipline of philosophy.
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  28. Questions of Ontology.Kathrin Koslicki - 2015 - In Stephan Blatti & Sandra Lapointe (eds.), Ontology After Carnap. Oxford University Press.
    Following W.V. Quine’s lead, many metaphysicians consider ontology to be concerned primarily with existential questions of the form, “What is there?”. Moreover, if the position advanced by Rudolf Carnap, in his seminal essay, “Empiricism, Semantics, and Ontology ”, is correct, then many of these existential ontological questions ought to be classified as either trivially answerable or as “pseudo-questions”. One may justifiably wonder, however, whether the Quinean and Carnapian perspective on ontology really does justice to many of the (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  29. TOWARDS ONTOLOGY FOR A UNIFIED KNOWLEDGE: THE HYPOTHESIS OF LOGICAL QUANTA.Meskos George - 2007.08.23 - Metanexus.Net.
    The suggestion of Logical Quanta (LQ) is a bidirectional synthesis of the theory of logos of Maximus the Confessor and the philosophical interpretation of quantum mechanics. The result of such a synthesis is enrichment to the ontology of classical mechanics that enable us to have a unified view and an explanatory frame of the whole cosmos. It also enables us to overcome the Cartesian duality both on biology and the interaction of body and mind. Finally, one can reconstruct a (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark  
  30.  93
    The Ontology of Words: Realism, Nominalism, and Eliminativism.James Miller - forthcoming - Philosophy Compass.
    What are words? What makes two token words tokens of the same word-type? Are words abstract entities, or are they (merely) collections of tokens? The ontology of words tries to provide answers to these, and related questions. This article provides an overview of some of the most prominent views proposed in the literature, with a particular focus on the debate between type-realist, nominalist, and eliminativist ontologies of words.
    Download  
     
    Export citation  
     
    Bookmark  
  31.  23
    Book Review: Relations: Ontology and Philosophy of Religion by Bertini, Daniele and Migliorini, Damiano. [REVIEW]Valeria Martino - 2019 - European Journal for Philosophy of Religion 11 (4):219.
    In this paper, I examine the book "Relations: Ontology and Philosophy of Religion" which is a collection of invited and selected papers dealing with both ontology and the philosophy of religion. It aims at showing how the two disciplines can fruitfully interact and provide useful tools for philosophical investigation. The background is relational ontology and analytical philosophy.
    Download  
     
    Export citation  
     
    Bookmark  
  32.  49
    Levels of Ontology and Natural Language: The Case of the Ontology of Parts and Wholes.Friederike Moltmann - forthcoming - In James Miller (ed.), The Language of Ontology. Oxford University Press.
    It is common in contemporary metaphysics to distinguish two levels of ontology: the ontology of ordinary objects and the ontology of fundamental reality. This papers argues that natural language reflects not only the ontology of ordinary objects, but also a language-driven ontology, which is involved in the mass-count distinction and part-structure-sensitive semantic selection, as well as perhaps the light ontology of pleonastic entities. The paper recasts my older theory of situated part structures without situations, (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark  
  33. Towards an Ontology of Pain.Barry Smith, Werner Ceusters, Louis J. Goldberg & Richard Ohrbach - 2011 - In Proceedings of the Conference on Ontology and Analytical Metaphysics. Keio University Press.
    We present an ontology of pain and of other pain-related phenomena, building on the definition of pain provided by the International Association for the Study of Pain (IASP). Our strategy is to identify an evolutionarily basic canonical pain phenomenon, involving unpleasant sensory and emotional experience based causally in localized tissue damage that is concordant with that experience. We then show how different variant cases of this canonical pain phenomenon can be distinguished, including pain that is elevated relative to peripheral (...)
    Download  
     
    Export citation  
     
    Bookmark   6 citations  
  34.  14
    Sound Ontology and the Brentano-Husserl Analysis of the Consciousness of Time.Jorge Luis Méndez-martínez - 2020 - HORIZON. Studies in Phenomenology 9 (1):184-215.
    Both Franz Brentano and Edmund Husserl addressed sound while trying to explain the inner consciousness of time and gave to it the status of a supporting example. Although their inquiries were not aimed at clarifying in detail the nature of the auditory experience or sounds themselves, they made some interesting observations that can contribute to the current philosophical discussion on sounds. On the other hand, in analytic philosophy, while inquiring the nature of sounds, their location, auditory experience or the audible (...)
    Download  
     
    Export citation  
     
    Bookmark  
  35. Wholistic Reference, Truth-Values, Universes of Discourse, and Formal Ontology: Tréplica to Oswaldo Chateaubriand.John Corcoran - 2005 - Manuscrito 28 (1):143-167.
    ABSTRACT: In its strongest unqualified form, the principle of wholistic reference is that in any given discourse, each proposition refers to the whole universe of that discourse, regardless of how limited the referents of its non-logical or content terms. According to this principle every proposition of number theory, even an equation such as "5 + 7 = 12", refers not only to the individual numbers that it happens to mention but to the whole universe of numbers. This principle, its history, (...)
    Download  
     
    Export citation  
     
    Bookmark  
  36. The Ontology of Impossible Worlds.David A. Vander Laan - 1997 - Notre Dame Journal of Formal Logic 38 (4):597-620.
    The best arguments for possible worlds as states of affairs furnish us with equally good arguments for impossible worlds of the same sort. I argue for a theory of impossible worlds on which the impossible worlds correspond to maximal inconsistent classes of propositions. Three objections are rejected. In the final part of the paper, I present a menu of impossible worlds and explore some of their interesting formal properties.
    Download  
     
    Export citation  
     
    Bookmark   22 citations  
  37. Ontology of the False State: On the Relation Between Critical Theory, Social Philosophy, and Social Ontology.Italo Testa - 2015 - Journal of Social Ontology 1 (2):271-300.
    In this paper I will argue that critical theory needs to make its socio-ontological commitments explicit, whilst on the other hand I will posit that contemporary social ontology needs to amend its formalistic approach by embodying a critical theory perspective. In the first part of my paper I will discuss how the question was posed in Horkheimer’s essays of the 1930s, which leave open two options: (1) a constructive inclusion of social ontology within social philosophy, or else (2) (...)
    Download  
     
    Export citation  
     
    Bookmark  
  38. Triple-Aspect Monism and the Ontology of Quantum Particles.Côté Gilbert B. - 2013 - Open Journal of Philosophy 3 (4):451.
    An analysis of the physical implications of abstractness reveals the reality of three interconnected modes of existence: abstract, virtual and concrete, corresponding in physics to information, energy and matter. This triple-aspect monism clarifies the ontological status of subatomic quantum particles. It also provides a non-spooky solution to the weirdness of quantum physics and a new outlook for the mind-body problem. The ontological implications are profound for both physics and philosophy.
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  39.  36
    The Ontology of Group Agency.Daniele Porello, Emanuele Bottazzi & Roberta Ferrario - 2014 - In Pawel Garbacz & Oliver Kutz (eds.), Formal Ontology in Information Systems - Proceedings of the Eighth International Conference, {FOIS} 2014, September, 22-25, 2014, Rio de Janeiro, Brazil. pp. 183--196.
    We present an ontological analysis of the notion of group agency developed by Christian List and Philip Pettit. We focus on this notion as it allows us to neatly distinguish groups, organizations, corporations – to which we may ascribe agency – from mere aggregates of individuals. We develop a module for group agency within a foundational ontology and we apply it to organizations.
    Download  
     
    Export citation  
     
    Bookmark  
  40. Handbook of Metaphysics and Ontology.Hans Burkhardt & Barry Smith (eds.) - 1991 - Philosophia Verlag.
    The Handbook of Metaphysics and Ontology reflects the conviction that the history of metaphysics and current work in metaphysics and ontology can each throw valuable light on the other. Thus it is designed to serve both äs a means of making more widely accessible the results of recent scholarship in the history of philosophy, and also äs a unique work of reference in reladon to the metaphysical themes at the centre of much current debate in analyüc philosophy. The (...)
    Download  
     
    Export citation  
     
    Bookmark   8 citations  
  41.  20
    Городское Пространство: Структурная Онтология Сообществ (Urban Space: Structural Ontology of Communities).Vitalii Shymko - 2020 - SSRN Electronic Journal.
    Russian abstract: В данном сборнике статей раскрывается формирование структурно-онтологического представления о таком явлении, как городское пространство. Наряду с соответствующей концептуализацией, также представлено и объяснено определение городского сообщества. Обоснована логика классификации городских сообществ. А также проанализированы факторы, обуславливающие их устойчивость. -/- English abstract: This collection of articles reveals the formation of a structural-ontological concept of such a phenomenon as urban space. Along with relevant conceptualization, the definition of an urban community is also presented and explained. The logic of classification of urban (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark  
  42. The Ontology of Epistemology.Barry Smith - 1987 - Reports in Philosophy 11:57-66.
    Ingarden’s puzzle is: how can we come to know what is essentially involved in an act of knowing? As starting point he takes what he holds to be a particular good candidate example of such an act, namely an act of perceiving an apple. Here we have act and object standing in a certain first-level relation to each other. We now in a second level act of reflection, make this first-level relation into an object, and strive to apprehend this object (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  43. A First-Order Logic Formalization of the Industrial Ontology Foundry Signature Using Basic Formal Ontology.Barry Smith, Farhad Ameri, Hyunmin Cheong, Dimitris Kiritsis, Dusan Sormaz, Chris Will & J. Neil Otte - 2019 - In Proceedings of the Joint Ontology Workshops (JOWO), Graz.
    Basic Formal Ontology (BFO) is a top-level ontology used in hundreds of active projects in scientific and other domains. BFO has been selected to serve as top-level ontology in the Industrial Ontologies Foundry (IOF), an initiative to create a suite of ontologies to support digital manufacturing on the part of representatives from a number of branches of the advanced manufacturing industries. We here present a first draft set of axioms and definitions of an IOF upper ontology (...)
    Download  
     
    Export citation  
     
    Bookmark  
  44.  68
    The Ontology of Reference: Studies in Logic and Phenomenology.Barry Smith - 1976 - Dissertation, Manchester
    Abstract: We propose a dichotomy between object-entities and meaning-entities. The former are entities such as molecules, cells, organisms, organizations, numbers, shapes, and so forth. The latter are entities such as concepts, propositions, and theories belonging to the realm of logic. Frege distinguished analogously between a ‘realm of reference’ and a ‘realm of sense’, which he presented in some passages as mutually exclusive. This however contradicts his assumption elsewhere that every entity is a referent (even Fregean senses can be referred to (...)
    Download  
     
    Export citation  
     
    Bookmark  
  45. The Varieties of Normativity: An Essay on Social Ontology.Leo Zaibert & Barry Smith - 2007 - In Savas L. Tsohatzidis (ed.), Intentional Acts and Institutional Facts: Essays on John Searle’s Social Ontology. Springer. pp. 157-173.
    For much of the first fifty years of its existence, analytic philosophy shunned discussions of normativity and ethics. Ethical statements were considered as pseudo-propositions, or as expressions of pro- or con-attitudes of minor theoretical significance. Nowadays, in contrast, prominent analytic philosophers pay close attention to normative problems. Here we focus our attention on the work of Searle, at the same time drawing out an important connection between Searle’s work and that of two other seminal figures in this development: H.L.A. Hart (...)
    Download  
     
    Export citation  
     
    Bookmark   7 citations  
  46.  36
    Physics and Ontology - or The 'Ontology-Ladenness' of Epistemology and the 'Scientific Realism'-Debate.Rudolf Lindpointner - manuscript
    The question of what ontological insights can be gained from the knowledge of physics (keyword: ontic structural realism) cannot obviously be separated from the view of physics as a science from an epistemological perspective. This is also visible in the debate about 'scientific realism'. This debate makes it evident, in the form of the importance of perception as a criterion for the assertion of existence in relation to the 'theoretical entities' of physics, that epistemology itself is 'ontologically laden'. This is (...)
    Download  
     
    Export citation  
     
    Bookmark  
  47. Real Estate: Foundations of the Ontology of Property.Barry Smith - 2003 - In Heiner Stuckenschmidt, Erik Stubjkaer & Christoph Schlieder (eds.), The Ontology and Modelling of Real Estate Transactions. Ashgate. pp. 51-67.
    Suppose you own a garden-variety object such as a hat or a shirt. Your property right then follows the ageold saw according to which possession is nine-tenths of the law. That is, your possession of a shirt constitutes a strong presumption in favor of your ownership of the shirt. In the case of land, however, this is not the case. Here possession is not only not a strong presumption in favor of ownership; it is not even clear what possession is. (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  48.  79
    The Ontology-Epistemology Divide: A Case Study in Medical Terminology.OIivier Bodenreider, Barry Smith & Anita Burgun - 2004 - In Achille Varzi & Laure Vieu (eds.), Formal Ontology in Information Systems. Proceedings of the Third International Conference (FOIS 2004). IOS Press.
    Medical terminology collects and organizes the many different kinds of terms employed in the biomedical domain both by practitioners and also in the course of biomedical research. In addition to serving as labels for biomedical classes, these names reflect the organizational principles of biomedical vocabularies and ontologies. Some names represent invariant features (classes, universals) of biomedical reality (i.e., they are a matter for ontology). Other names, however, convey also how this reality is perceived, measured, and understood by health professionals (...)
    Download  
    Translate
     
     
    Export citation  
     
    Bookmark   14 citations  
  49. The Ontology of Bohmian Mechanics.M. Esfeld, D. Lazarovici, Mario Hubert & D. Durr - 2014 - British Journal for the Philosophy of Science 65 (4):773-796.
    The paper points out that the modern formulation of Bohm’s quantum theory known as Bohmian mechanics is committed only to particles’ positions and a law of motion. We explain how this view can avoid the open questions that the traditional view faces according to which Bohm’s theory is committed to a wave-function that is a physical entity over and above the particles, although it is defined on configuration space instead of three-dimensional space. We then enquire into the status of the (...)
    Download  
     
    Export citation  
     
    Bookmark   53 citations  
  50.  50
    Representing Disease Courses: An Application of the Neurological Disease Ontology to Multiple Sclerosis Typology.Mark Jensen, Alexander P. Cox, Barry Smith & Alexander Diehl - 2013 - In Proceedings of the Fourth International Conference on Biomedical Ontology (ICBO), CEUR, vol. 1060.
    The Neurological Disease Ontology (ND) is being developed to provide a comprehensive framework for the representation of neurological diseases (Diehl et al., 2013). ND utilizes the model established by the Ontology for General Medical Science (OGMS) for the representation of entities in medicine and disease (Scheuermann et al., 2009). The goal of ND is to include information for each disease concerning its molecular, genetic, and environmental origins, the processes involved in its etiology and realization, as well as its (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
1 — 50 / 1000