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  1. Multi-model approaches to phylogenetics: Implications for idealization.Aja Watkins - 2021 - Studies in History and Philosophy of Science Part A 90 (C):285-297.
    Phylogenetic models traditionally represent the history of life as having a strictly-branching tree structure. However, it is becoming increasingly clear that the history of life is often not strictly-branching; lateral gene transfer, endosymbiosis, and hybridization, for example, can all produce lateral branching events. There is thus motivation to allow phylogenetic models to have a reticulate structure. One proposal involves the reconciliation of genealogical discordance. Briefly, this method uses patterns of disagreement – discordance – between trees of different genes to add (...)
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  • Deep Learning-Aided Research and the Aim-of-Science Controversy.Yukinori Onishi - forthcoming - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie:1-19.
    The aim or goal of science has long been discussed by both philosophers of science and scientists themselves. In The Scientific Image (van Fraassen 1980), the aim of science is famously employed to characterize scientific realism and a version of anti-realism, called constructive empiricism. Since the publication of The Scientific Image, however, various changes have occurred in scientific practice. The increasing use of machine learning technology, especially deep learning (DL), is probably one of the major changes in the last decade. (...)
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  • Exploring the socio-ecology of science: the case of coral reefs.Elis Jones - 2024 - European Journal for Philosophy of Science 14 (3):1-33.
    In this paper I use data from interviews conducted with coral scientists to examine the socio-ecological dimensions of science, i.e. how science shapes and is shaped by the living world around it. I use two sets of ideas in particular: niche construction and socio-ecological value frameworks. Using these I offer socio-ecological criteria by which coral scientists evaluate the activities of coral science, more specifically which living systems are intended to benefit from coral science as an activity, and the motivations behind (...)
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  • Should friends and frenemies of understanding be friends? Discussing de Regt.Kareem Khalifa - 2022 - In Insa Lawler, Kareem Khalifa & Elay Shech (eds.), Scientific Understanding and Representation: Modeling in the Physical Sciences. New York, NY: Routledge.
    In earlier work, I criticized de Regt’s contextual theory of understanding, and advertised the advantages of my own, knowledge-based account. Using the early history of the standard model in particle physics as an illustration, I instead consider the benefits of unifying these two accounts of understanding. I argue that de Regt’s account substantially improves my own account of explanatory consideration, and that my account of explanatory comparison substantially improves upon his account of explanatory evaluation. De Regt and my apparent disagreement (...)
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  • Scaling procedures in climate science: Using temporal scaling to identify a paleoclimate analogue.Aja Watkins - 2023 - Studies in History and Philosophy of Science Part A 102 (C):31-44.
    Using past episodes of climate change as a source of evidence to inform our projections about contemporary climate change requires establishing the extent to which episodes in the deep past are analogous to the current crisis. However, many scientists claim that contemporary rates of climate change (e.g., rates of carbon emissions or temperature change) are unprecedented, including compared to episodes in the deep past. If so, this would limit the utility of paleoclimate analogues. In this paper, I show how a (...)
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  • Scientific progress, normative discussions, and the pragmatic account of definitions of life.Ludo L. J. Schoenmakers - 2023 - Synthese 201 (4):1-20.
    Discussions on the status of definitions of life have long been dominated by a position known as definitional pessimism. Per the definitional pessimist, there is no point in trying to define life. This claim is defended in different ways, but one of the shared assumptions of all definitional pessimists is that our attempts to define life are attempts to provide a list of all necessary and sufficient conditions for something to count as alive. In other words, a definition of life (...)
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