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  1. Humanistic interpretation and machine learning.Juho Pääkkönen & Petri Ylikoski - 2021 - Synthese 199:1461–1497.
    This paper investigates how unsupervised machine learning methods might make hermeneutic interpretive text analysis more objective in the social sciences. Through a close examination of the uses of topic modeling—a popular unsupervised approach in the social sciences—it argues that the primary way in which unsupervised learning supports interpretation is by allowing interpreters to discover unanticipated information in larger and more diverse corpora and by improving the transparency of the interpretive process. This view highlights that unsupervised modeling does not eliminate the (...)
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  • Whatever Happened to Reversion?Charles H. Pence - 2022 - Studies in History and Philosophy of Science Part A 92 (C):97-108.
    The idea of ‘reversion’ or ‘atavism’ has a peculiar history. For many authors in the latenineteenth and early-twentieth centuries – including Darwin, Galton, Pearson, Weismann, and Spencer, among others – reversion was one of the central phenomena which a theory of heredity ought to explain. By only a few decades later, however, Fisher and others could look back upon reversion as a historical curiosity, a non-problem, or even an impediment to clear theorizing. I explore various reasons that reversion might have (...)
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  • The modern synthesis and “Progress” in evolution: a view from the journal literature.Charles H. Pence - 2024 - History and Philosophy of the Life Sciences 46 (4):39.
    The concept of “progress” in evolutionary theory and its relationship to a putative notion of “Progress” in a global, normatively loaded sense of “change for the better” have been the subject of debate since Darwin admonished himself in a marginal note to avoid using the terms ‘higher’ and ‘lower.’ While an increase in some kind of complexity in the natural world might seem self-evident, efforts to explicate this trend meet notorious philosophical difficulties. Numerous historians pin the Modern Synthesis as a (...)
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  • The economy of nature: the structure of evolution in Linnaeus, Darwin, and the modern synthesis.Charles H. Pence & Daniel G. Swaim - 2017 - European Journal for Philosophy of Science 8 (3):435-454.
    We argue that the economy of nature constitutes an invocation of structure in the biological sciences, one largely missed by philosophers of biology despite the turn in recent years toward structural explanations throughout the philosophy of science. We trace a portion of the history of this concept, beginning with the theologically and economically grounded work of Linnaeus, moving through Darwin’s adaptation of the economy of nature and its reconstitution in genetic terms during the first decades of the Modern Synthesis. What (...)
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  • Testing and discovery: Responding to challenges to digital philosophy of science.Charles H. Pence - 2022 - Metaphilosophy 53 (2-3):238-253.
    -/- For all that digital methods—including network visualization, text analysis, and others—have begun to show extensive promise in philosophical contexts, a tension remains between two uses of those tools that have often been taken to be incompatible, or at least to engage in a kind of trade-off: the discovery of new hypotheses and the testing of already-formulated positions. This paper presents this basic distinction, then explores ways to resolve this tension with the help of two interdisciplinary case studies, taken from (...)
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  • How to Do Digital Philosophy of Science.Charles H. Pence & Grant Ramsey - 2018 - Philosophy of Science 85 (5):930-941.
    Philosophy of science is expanding via the introduction of new digital data and tools for their analysis. The data comprise digitized published books and journal articles, as well as heretofore unpublished material such as images, archival text, notebooks, meeting notes, and programs. The growth in available data is matched by the extensive development of automated analysis tools. The variety of data sources and tools can be overwhelming. In this article, we survey the state of digital work in the philosophy of (...)
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  • What is this thing called Philosophy of Science? A computational topic-modeling perspective, 1934–2015.Christophe Malaterre, Jean-François Chartier & Davide Pulizzotto - 2019 - Hopos: The Journal of the International Society for the History of Philosophy of Science 9 (2):215-249.
    What is philosophy of science? Numerous manuals, anthologies or essays provide carefully reconstructed vantage points on the discipline that have been gained through expert and piecemeal historical analyses. In this paper, we address the question from a complementary perspective: we target the content of one major journal of the field—Philosophy of Science—and apply unsupervised text-mining methods to its complete corpus, from its start in 1934 until 2015. By running topic-modeling algorithms over the full-text corpus, we identified 126 key research topics (...)
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  • Revisiting three decades of Biology and Philosophy: a computational topic-modeling perspective.Christophe Malaterre, Davide Pulizzotto & Francis Lareau - 2019 - Biology and Philosophy 35 (1):5.
    Though only established as a discipline since the 1970s, philosophy of biology has already triggered investigations about its own history The Oxford handbook of philosophy of biology, Oxford University Press, New York, pp 11–33, 2008). When it comes to assessing the road since travelled—the research questions that have been pursued—manuals and ontologies also offer specific viewpoints, highlighting dedicated domains of inquiry and select work. In this article, we propose to approach the history of the philosophy of biology with a complementary (...)
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  • Digital Literature Analysis for Empirical Philosophy of Science.Oliver M. Lean, Luca Rivelli & Charles H. Pence - 2021 - British Journal for the Philosophy of Science (4):875-898.
    Empirical philosophers of science aim to base their philosophical theories on observations of scientific practice. But since there is far too much science to observe it all, how can we form and test hypotheses about science that are sufficiently rigorous and broad in scope, while avoiding the pitfalls of bias and subjectivity in our methods? Part of the answer, we claim, lies in the computational tools of the digital humanities, which allow us to analyze large volumes of scientific literature. Here (...)
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