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While the topics of emergentism and religious naturalism have both received renewed attention in the past two decades, the recent publication of several books and numerous articles arguing for emergentism and its religious significance suggests that they are converging in interesting ways. Indeed, religious naturalists such as cell biologist Ursula Goodenough, complexity theorist Stuart Kauffman, and philosopher Loyal Rue have been important voices in this conversation. While they cannot be easily classified as religious naturalists, biological anthropologist Terrence Deacon and theologian (...) |
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Contemporary textbooks often define evolution in terms of the replication, mutation, and selective retention of DNA sequences, ignoring the contribution of the physical processes involved. In the closing line of The Origin of Species, however, Darwin recognized that natural selection depends on prior more basic living functions, which he merely described as life’s “several powers.” For Darwin these involved the organism’s capacity to maintain itself and to reproduce offspring that preserve its critical functional organization. In modern terms we have come (...) |
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Awareness of boundary, both physical and mental, is seen as the beginning of perception. In any account of the world, therefore, boundary must be a ubiquitous component. In sharp contrast, accounts of God within the Christian tradition commonly have proceeded by the affirmation that God is above and beyond boundary as infinite, timeless, and simple. To overcome this “problem of transcendence,” of how such a God can relate to such a world, an eight-term grammar of boundary is developed to demonstrate (...) |
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The design argument was rebutted by David Hume. He argued that the world and its contents (such as organisms) were not analogous to human artifacts. Hume further suggested that there were equally plausible alternatives to design to explain the organized complexity of the cosmos, such as random processes in multiple universes, or that matter could have inherent properties to self-organize, absent any external crafting. William Paley, writing after Hume, argued that the functional complexity of living beings, however, defied naturalistic explanations. (...) |
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Forty-five years ago, while still an undergraduate student at Western Washington University’s Fairhaven College of Interdisciplinary Studies, Terrence Deacon produced as his honours thesis a programmatic manifesto for re-situating the semiotic logic of Charles Sanders Peirce “out of the realm of philosophy and [revealing instead] its necessary association with the information sciences and its close parallels with current systems theories”. Deacon’s project, then and now, has been to show how, within the context of naturally occurring physical processes, Peirce’s essential insight (...) |
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The concept of scaffolding has wide resonance in several scientific fields. Here we attempt to adopt it for the study of development. In this perspective, the embryo is conceived as an integral whole, comprised of several hierarchical modules as in a recurrent circularity of emerging patterns. Within the developmental hierarchy, each module yields an inter-level relationship that makes it possible for the scaffolding to mediate the production of selectable variations. A wide range of genetic, cellular and morphological mechanisms allows the (...) |
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The autocell proposal for the emergence of life and natural selection through the interaction of two reciprocally coupled self-organizing processes specifically provides a protein-first model for the origin of life that can be explored by computer simulations and experiment. Beyond the specific proposal it can be considered more generally as a thought experiment in which the principles deduced for the autocell could apply to other possible detailed chemical scenarios of catalytic polymers and protometabolism, including living systems emerging within membranelike barriers. (...) |
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We offer a general definition of interpretation based on a naturalized teleology. The definition tests and extends the biosemiotic paradigm by seeking to provide a philosophically robust resource for investigating the possible role of semiosis (processes of representation and interpretation) in biological systems. We show that our definition provides a way of understanding various possible kinds of misinterpretation, illustrate the definition using examples at the cellular and subcellular level, and test the definition by applying it to a potential counterexample. We (...) |
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How semiotic freedom emerges in the evolution and development of organisms through semiotic scaffolding is a core problem for biosemiotics. There is a paradox in explaining this semiotic emergence: reduction in (semiotic) freedom leads to the creation of new semiotic freedom. Semiotic emergence is a species of dynamic emergence. Accordingly, the paradox of semiotic emergence is a species of the paradox of dynamic emergence. The latter paradox claims that reducing lower-level freedom generates new freedom at a higher level. The solution (...) |
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Biosemiotics is the synthesis of biology and semiotics, and its main purpose is to show that semiosis is a fundamental component of life, i.e., that signs and meaning exist in all living systems. This idea started circulating in the 1960s and was proposed independently from enquires taking place at both ends of the Scala Naturae. At the molecular end it was expressed by Howard Pattee’s analysis of the genetic code, whereas at the human end it took the form of Thomas (...) |
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If the problem of the origin of life is conceptualized as a process of emergence of biochemistry from proto-biochemistry, which in turn emerged from the organic chemistry and geochemistry of primitive earth, then the resources of the new sciences of complex systems dynamics can provide a more robust conceptual framework within which to explore the possible pathways of chemical complexification leading to living systems and biosemiosis. In such a view the emergence of life, and concomitantly of natural selection and biosemiosis, (...) |
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Many in science are disposed not to take biosemiotics seriously, dismissing it as too anthropomorphic. Furthermore, biosemiotic apologetics are cast in top-down fashion, thereby adding to widespread skepticism. An effective response might be to approach biosemiotics from the bottom up, but the foundational assumptions that support Enlightenment science make that avenue impossible. Considerations from ecosystem studies reveal, however, that those conventional assumptions, although once possessing great utilitarian value, have come to impede deeper understanding of living systems because they implicitly depict (...) |
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Theses on the semiotic study of life as presented here provide a collectively formulated set of statements on what biology needs to be focused on in order to describe life as a process based on semiosis, or sign action. An aim of the biosemiotic approach is to explain how life evolves through all varieties of forms of communication and signification (including cellular adaptive behavior, animal communication, and human intellect) and to provide tools for grounding sign theories. We introduce the concept (...) |
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Abstract Emergence theory has generated many significant new questions for dialogue between theology and science. My work will examine the models of one emergence theorist, Terrence Deacon, and consider the constructive potential of Tillich's multidimensional unity of life for responding to the theological ramifications of this account of emergence theory. Such a Tillich-inspired constructive process will rely upon Robert Russell's method of “Creative Mutual Interaction.” Building on the interactive quality of Russell's method, I will also begin to offer suggestions for (...) |
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In the target article “How molecules became signs” I offer a molecular “thought experiment” that provides a paradigm for resolving the major incompatibilities between biosemiotic and natural science accounts of living processes. To resolve these apparent incompatibilities I outline a plausible empirically testable model system that exemplifies the emergence of chemical processes exhibiting semiotic causal properties from basic nonliving chemical processes. This model system is described as an autogenic virus because of its virus-like form, but its nonparasitic self-repair and reproductive (...) |
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The respondent agrees with William Grassie that many windows on nature are possible; that emphasis must remain on the generation of order; that “chance” would better be recast as “contingency”; and that the ecological metaphysic has wide implications for a “politics of nature”. He accepts the challenge by Pedro Sotolongo to extend his metaphysic into the realm of pan-semiotics and agrees that an ecological perspective offers the best hope for solving the world’s inequities. He replies to Stanley Salthe that he (...) |
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Chance has somewhat different meanings in different contexts, and can be taken to be either ontological or epistemological . Here I argue that, whether or not it stems from physical indeterminacy, chance is a fundamental biological reality that is meaningless outside the context of knowledge. To say that something happened by chance means that it did not happen by design. This of course is a cornerstone of Darwin’s theory of evolution: random undirected variation is the creative wellspring upon which natural (...) |
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The laws of physics, because they are cast in terms of homogeneous variables, fall short of determining outcomes in heterogeneous biological systems that are capable of an immense number of combinatoric changes. The universal laws are not violated and they continue to constrain, but specification of results is accomplished instead by stable configurations of processes that develop in a nonrandom, but indeterminate manner. The indeterminacy of physical laws puts an end to Deist speculations and necessitates an alternative to the mechanical-reductionistic (...) |
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Ecology, with its emphasis on coupled processes and massive heterogeneity, is not amenable to complete mechanical reduction, which is frustrated for reasons of history, dimensionality, logic, insufficiency, and contingency. Physical laws are not violated, but can only constrain, not predict. Outcomes are predicated instead by autocatalytic configurations, which emerge as stable temporal series of incorporated contingencies. Ecosystem organization arises out of agonism between autocatalytic selection and entropic dissolution. A degree of disorganization, inefficiency, and functional redundancy must be retained by all (...) |
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Kalevi Kull and colleagues recently proposed eight theses as a conceptual basis for the field of biosemiotics. We use these theses as a framework for discussing important current areas of debate in biosemiotics with particular reference to the articles collected in this issue of Zygon. |
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We draw on Short’s work on Peirce’s theory of signs to propose a new general definition of interpretation. Short argues that Peirce’s semiotics rests on his naturalised teleology. Our proposal extends Short’s work by modifying his definition of interpretation so as to make it more generally applicable to putatively interpretative processes in biological systems. We use our definition as the basis of an account of different kinds of misinterpretation and we discuss some questions raised by the definition by reference to (...) |
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This Afterword looks back over both parts of the discussion of “God and the World of Signs”—“Semiotics and the Emergence of Life” in the previous issue of Zygon and “Semiotics and Theology” in this issue. Three central questions in this extended debate are identified: What is the nature of biological organisms and biological evolution? What is the relationship between the natural world and the Triune God of the Christian theological tradition? What should be the goals of Science/Religion Studies? I summarize (...) |
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