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  1. Functional complexity in organisms: Parts as proxies. [REVIEW]Daniel W. McShea - 2000 - Biology and Philosophy 15 (5):641-668.
    The functional complexity, or the number of functions, of organisms hasfigured prominently in certain theoretical and empirical work inevolutionary biology. Large-scale trends in functional complexity andcorrelations between functional complexity and other variables, such assize, have been proposed. However, the notion of number of functions hasalso been operationally intractable, in that no method has been developedfor counting functions in an organism in a systematic and reliable way.Thus, studies have had to rely on the largely unsupported assumption thatnumber of functions can be (...)
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  • Parts and theories in compositional biology.Rasmus Grønfeldt Winther - 2006 - Biology and Philosophy 21 (4):471-499.
    I analyze the importance of parts in the style of biological theorizing that I call compositional biology. I do this by investigating various aspects, including partitioning frames and explanatory accounts, of the theoretical perspectives that fall under and are guided by compositional biology. I ground this general examination in a comparative analysis of three different disciplines with their associated compositional theoretical perspectives: comparative morphology, functional morphology, and developmental biology. I glean data for this analysis from canonical textbooks and defend the (...)
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  • Aggregate, composed, and evolved systems: Reductionistic heuristics as means to more holistic theories. [REVIEW]William C. Wimsatt - 2006 - Biology and Philosophy 21 (5):667-702.
    Richard Levins’ distinction between aggregate, composed and evolved systems acquires new significance as we recognize the importance of mechanistic explanation. Criteria for aggregativity provide limiting cases for absence of organization, so through their failure, can provide rich detectors for organizational properties. I explore the use of failures of aggregativity for the analysis of mechanistic systems in diverse contexts. Aggregativity appears theoretically desireable, but we are easily fooled. It may be exaggerated through approximation, conditions of derivation, and extrapolating from some conditions (...)
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  • Again, what the philosophy of biology is not.Werner Callebaut - 2005 - Acta Biotheoretica 53 (2):93-122.
    There are many things that philosophy of biology might be. But, given the existence of a professional philosophy of biology that is arguably a progressive research program and, as such, unrivaled, it makes sense to define philosophy of biology more narrowly than the totality of intersecting concerns biologists and philosophers (let alone other scholars) might have. The reasons for the success of the “new” philosophy of biology remain poorly understood. I reflect on what Dutch and Flemish, and, more generally, European (...)
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  • Metaphysics, method, and the mouth: Philosophical lessons of speech perception.J. D. Trout - 2001 - Philosophical Psychology 14 (3):261-291.
    This paper advances a novel argument that speech perception is a complex system best understood nonindividualistically and therefore that individualism fails as a general philosophical program for understanding cognition. The argument proceeds in four steps. First, I describe a "replaceability strategy", commonly deployed by individualists, in which one imagines replacing an object with an appropriate surrogate. This strategy conveys the appearance that relata can be substituted without changing the laws that hold within the domain. Second, I advance a "counterfactual test" (...)
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  • Aggregativity: Reductive heuristics for finding emergence.William C. Wimsatt - 1997 - Philosophy of Science 64 (4):372-84.
    Most philosophical accounts of emergence are incompatible with reduction. Most scientists regard a system property as emergent relative to properties of the system's parts if it depends upon their mode of organization--a view consistent with reduction. Emergence can be analyzed as a failure of aggregativity--a state in which "the whole is nothing more than the sum of its parts." Aggregativity requires four conditions, giving tools for analyzing modes of organization. Differently met for different decompositions of the system, and in different (...)
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  • Goal directedness and the field concept.Gunnar Babcock & McShea Dan - forthcoming - Philosophy of Science.
    A long-standing problem in understanding goal-directed systems has been the insufficiency of mechanistic explanations to make sense of them. This paper offers a solution to this problem. It begins by observing the limitations of mechanistic decompositions when it comes to understanding physical fields. We argue that introducing the field concept, as it has been developed in field theory, alongside mechanisms is able to provide an account of goal directedness in the sciences.
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  • The Promises of Complexity Sciences: A Critique.Fabrizio Li Vigni - 2023 - Perspectives on Science 31 (4):465-502.
    Complexity sciences have become famous worldwide thanks to several popular books that served as echo chambers of their promises. These consisted in departing from “classical science” defined as deterministic, reductionist, analytic and mono-disciplinary. Their founders and supporters declared that complexity sciences were going to give rise (or that they have given rise) to a post-Laplacian, antireductionist, holistic and interdisciplinary approach. By taking a closer look at their content and practices, I argue in this article that, because of their physics-oriented, computationalist, (...)
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  • Themes of Consolidation in Eugene P. Odum’s Publicization of the Levels Concept in Ecology Textbooks, 1953–1975.Daniel S. Brooks - 2023 - Perspectives on Science 31 (4):437-464.
    Following its initial development in the 1920’s and 1930’s, by mid-century the concept of “levels of organization” began to disperse throughout the life science textbook literature. Among other early textbooks that first applied the levels concept, Eugene P. Odum’s usage of the notion in his textbook series Fundamentals of Ecology (and his later series Ecology) stands out due to the marked emphasis placed on the concept as a foundational, erotetically-oriented organizing principle. In this paper, I examine Odum’s efforts toward advocating (...)
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  • Philosophy of science in practice in ecological model building.Luana Poliseli, Jeferson G. E. Coutinho, Blandina Viana, Federica Russo & Charbel N. El-Hani - 2022 - Biology and Philosophy 37 (4):0-0.
    This article addresses the contributions of the literature on the new mechanistic philosophy of science for the scientific practice of model building in ecology. This is reflected in a one-to-one interdisciplinary collaboration between an ecologist and a philosopher of science during science-in-the-making. We argue that the identification, reconstruction and understanding of mechanisms is context-sensitive, and for this case study mechanistic modeling did not present a normative role but a heuristic one. We expect our study to provides useful epistemic tools for (...)
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  • The mechanistic stance.Jonny Lee & Joe Dewhurst - 2021 - European Journal for Philosophy of Science 11 (1):1-21.
    It is generally acknowledged by proponents of ‘new mechanism’ that mechanistic explanation involves adopting a perspective, but there is less agreement on how we should understand this perspective-taking or what its implications are for practising science. This paper examines the perspectival nature of mechanistic explanation through the lens of the ‘mechanistic stance’, which falls somewhere between Dennett’s more familiar physical and design stance. We argue this approach implies three distinct and significant ways in which mechanistic explanation can be interpreted as (...)
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  • Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell.Claes Andersson & Petter Törnberg - 2019 - Biological Theory 14 (2):86-102.
    Despite remarkable empirical and methodological advances, our theoretical understanding of the evolutionary processes that made us human remains fragmented and contentious. Here, we make the radical proposition that the cultural communities within which Homo emerged may be understood as a novel exotic form of organism. The argument begins from a deep congruence between robust features of Pan community life cycles and protocell models of the origins of life. We argue that if a cultural tradition, meeting certain requirements, arises in the (...)
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  • Rethinking the Individualism-Holism Debate.Julie Zahle & Finn Collin (eds.) - 2014 - Cham: Springer.
    This collection of papers investigates the most recent debates about individualism and holism in the philosophy of social science. The debates revolve mainly around two issues: firstly, whether social phenomena exist sui generis and how they relate to individuals. This is the focus of discussions between ontological individualists and ontological holists. Secondly, to what extent social scientific explanations may and should, focus on individuals and social phenomena respectively. This issue is debated amongst methodological holists and methodological individualists. -/- In social (...)
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  • Psa 2012.-Preprint Volume- - unknown
    These preprints were automatically compiled into a PDF from the collection of papers deposited in PhilSci-Archive in conjunction with the PSA 2012.
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  • On emergence, agency, and organization.Stuart Kauffman & Philip Clayton - 2006 - Biology and Philosophy 21 (4):501-521.
    Ultimately we will only understand biological agency when we have developed a theory of the organization of biological processes, and science is still a long way from attaining that goal. It may be possible nonetheless to develop a list of necessary conditions for the emergence of minimal biological agency. The authors offer a model of molecular autonomous agents which meets the five minimal physical conditions that are necessary (and, we believe, conjointly sufficient) for applying agential language in biology: autocatalytic reproduction; (...)
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  • Centering and extending: an essay on metaphysical sense.Steven G. Smith - 2017 - Albany: State University of New York Press.
    An original metaphysical proposal building on classical and contemporary sources. In Centering and Extending, Steven G. Smith retrieves and refashions some of the best ideas of classical and early modern metaphysics to support insight into the natures of mental and material beings and their relations. Avoiding what he critiques as distortive paths of idealism, materialism, repressive monism, and overly permissive pluralism, Smith builds his framework on centering and extending as universal principles of formation. Identifying the basic consistency of being with (...)
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  • Foregrounding and backgrounding: a new interpretation of “levels” in science.Eric Hochstein - 2022 - European Journal for Philosophy of Science 12 (2):1-22.
    Talk of “levels” can be found throughout the sciences, from “levels of abstraction”, to “levels of organization”, to “levels of analysis”. This has led to substantial disagreement regarding the ontology of levels, and whether the various senses of levels each have genuine value and utility to scientific practice. In this paper, I propose a unified framework for thinking about levels in science which ties together the various ways in which levels are invoked in science, and which can overcome the problems (...)
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  • Realization in biology?Sergio Balari & Guillermo Lorenzo - 2019 - History and Philosophy of the Life Sciences 41 (1):5.
    It is widely assumed that functional and dispositional properties are not identical to their physical base, but that there is some kind of asymmetrical ontological dependence between them. In this regard, a popular idea is that the former are realized by the latter, which, under the non-identity assumption, is generally understood to be a non-causal, constitutive relation. In this paper we examine two of the most widely accepted approaches to realization, the so-called ‘flat view’ and the ‘dimensioned view’, and we (...)
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  • Cancer Modeling: the Advantages and Limitations of Multiple Perspectives.A. Plutynski - 2020 - In Michela Massimi & Casey D. McCoy (eds.), Understanding Perspectivism (Open Access): Scientific Challenges and Methodological Prospects. New York, NY, USA: Routledge.
    Cancer is a paradigmatic case of a complex causal process; causes of cancer operate at a variety of temporal and spatial scales, and the respects in which these causes act and interact are diverse. There are, for instance, temporal order effects, organizational effects, structural effects, and dynamic relationships between causes operating at different temporal and spatial scales. Because of this complexity, models of cancer initiation and progression often involve deliberate choices to focus on one time scale, one causal pathway, or (...)
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  • A critique of emergent theologies.Joanna Leidenhag - 2016 - Zygon 51 (4):867-882.
    This article is an analysis and critique of emergent theologies, focusing on areas of Christology and pneumatology. An increasing number of Christian theologians are integrating emergence theory into their work. I argue that, despite the range of theological commitments and methodological approaches represented by these scholars, each faces similar problematic tendencies when their Christian doctrines are combined with emergence theory. It is concluded that the basic logic of emergence theory, whereby matter is seen to precede mind, makes it difficult for (...)
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  • Musical pluralism and the science of music.Adrian Currie & Anton Killin - 2016 - European Journal for Philosophy of Science 6 (1):9-30.
    The scientific investigation of music requires contributions from a diverse array of disciplines. Given the diverse methodologies, interests and research targets of the disciplines involved, we argue that there is a plurality of legitimate research questions about music, necessitating a focus on integration. In light of this we recommend a pluralistic conception of music—that there is no unitary definition divorced from some discipline, research question or context. This has important implications for how the scientific study of music ought to proceed: (...)
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  • Hegel’s Pragmatic Critique and Reconstruction of Kant’s System of Principles in the Logic_ and _Encyclopaedia.Kenneth R. Westphal - 2015 - Dialogue 54 (2):333-369.
    Dans laScience de la logiqueet dans l’Encyclopédie des sciences philosophiques,Hegel reconstruit la philosophie critique de Kant en développant i) une logique transcendantale dans laScience de la logiqueet dans laPhilosophie de la nature; ii) une conception pragmatique de l’a priori; et iii) une caractéristique-clé de l’usage du verbe «réaliser» en relation avec les concepts et les principes. Chacun de ces trois éléments constitue un aspect central de la sémantique spécifiquement cognitive de Hegel, que celui-ci développe, en partant de la thèse kantienne (...)
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  • The Varieties of Molecular Explanation.Marco J. Nathan - 2012 - Philosophy of Science 79 (2):233-254.
    Reductionists in biology claim that all biological events can be explained in terms of genes and macromolecules alone, while antireductionists argue that some biological events must be explained at a higher level. The literature, however, does not distinguish between different kinds of molecular explanation. The goal of this article is to identify and analyze three such kinds. The analysis of molecular explanations herein carries an important philosophical implication; in shunning crude reductionism and extreme versions of holism, we can combine the (...)
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  • Physicalism in an infinitely decomposable world.Barbara Montero - 2006 - Erkentnis 64 (2):177-191.
    Might the world be structured, as Leibniz thought, so that every part of matter is divided ad infinitum? The Physicist David Bohm accepted infinitely decomposable matter, and even Steven Weinberg, a staunch supporter of the idea that science is converging on a final theory, admits the possibility of an endless chain of ever more fundamental theories. However, if there is no fundamental level, physicalism, thought of as the view that everything is determined by fundamental phenomena and that all fundamental phenomena (...)
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  • Regimes of Evidence in Complexity Sciences.Fabrizio Li Vigni - 2021 - Perspectives on Science 29 (1):62-103.
    Since their inception in the 1980s, complexity sciences have been described as a revolutionary new domain of research. By describing some of the practices and assumptions of its representatives, the present article shows that this field is an association of subdisciplines laying on existing disciplinary footholds. The general question guiding us here is: On what basis do complexity scientists consider their inquiry methods and results as valuable? To answer it, I describe five “epistemic argumentative regimes,” namely the ways in which (...)
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  • Does hiv or poverty cause aids? Biomedical and epidemiological perspectives.Albert Mosley - 2004 - Theoretical Medicine and Bioethics 25 (5-6):399-421.
    This paper contrasts biomedical and epidemiological approaches to the diagnosis and treatment of disease, and uses Collingwoods principle of the relativity of causes to show how different approaches focus on different causal factors reflecting different interests. By distinguishing between the etiology of a disease and an epidemic, the paper argues that, from an epidemiological perspective, poverty is an important causal factor in the African AIDS epidemic and that emphasizing this should not be considered incompatible with recognizing the causal necessity of (...)
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  • A revised darwinism.Daniel W. McShea - 2004 - Biology and Philosophy 19 (1):45-53.
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  • Moving beyond the subset model of realization: The problem of qualitative distinctness in the metaphysics of science.Carl Gillett - 2010 - Synthese 177 (2):165 - 192.
    Understanding the 'making-up' relations, to put things neutrally, posited in mechanistic explanations the sciences is finally an explicit topic of debate amongst philosophers of science. In particular, there is now lively debate over the nature of the so-called 'realization' relations between properties posited in such explanations. Despite criticism (Gillett, Analysis 62: 316-323, 2002a), the most common approach continues to be that of applying machinery developed in the philosophy of mind to scientific concepts in what is known as the 'Flat' or (...)
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  • The Epistemic Project of Complex Systems Sciences.Fabrizio Li Vigni - 2020 - Philosophia Scientiae 24:181-200.
    Cet article se propose de décrire le projet épistémique des sciences des systèmes complexes. Domaine interdisciplinaire fondé par le Santa Fe Institute en 1984 aux États-Unis, il a été décrit par ses représentants comme un champ d’étude interdisciplinaire, post-laplacien, holiste et antiréductionniste. Des journalistes populaires et des sociologues intéressés et qui ont soutenu ce domaine en ont repris les discours, en annonçant l’avènement d’un nouveau paradigme révolutionnaire pour tous les savoirs. Dans ce texte, on montrera que le projet épistémique des (...)
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  • Convergence strategies for theory assessment.Elena Castellani - 2024 - Studies in History and Philosophy of Science Part A 104 (C):78-87.
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  • The role of philosophy of science in Responsible Research and Innovation : the case of nanomedicine.Gry Oftedal - 2014 - Life Sciences, Society and Policy 10 (1):1-12.
    Research on ethical, legal and social aspects of life sciences and new technologies has mainly been focused on impacts and consequences, while the emerging framework of Responsible Research and Innovation focuses rather on increased involvement and reflexivity in research processes to foster science and technology that better answers the needs of society. I argue that philosophy of science should be a central feature of RRI and demonstrate how the philosophy of science can contribute in this sense. I show how investigating (...)
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  • Patternhood and Generality.Jimmy Aames - 2019 - European Journal of Pragmatism and American Philosophy 11 (2).
    A distinction often drawn in the literature on emergence is that between epistemological emergence and ontological emergence. I argue that the position that there are instances of ontological emergence in the world (radical emergentism) and the position that all instances of emergence are epistemological (ontological reductionism) are both problematic. My aim in this paper is to outline a third form of emergence, inspired by the philosophical ideas of Charles S. Peirce and Daniel Dennett, which will allow us to avoid both (...)
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  • Review. [REVIEW]Nigel Clark - 2013 - Contemporary Political Theory 12 (3):15-19.
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  • Recent Work in the History and Philosophy of Chemistry.Jeffry L. Ramsey - 1998 - Perspectives on Science 6 (4):409-427.
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  • Current Issues in the Philosophy of Biology.Marjorie Grene - 1997 - Perspectives on Science 5 (2):255-281.
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  • Clearing Away Assumptions Through Philosophy and Research.Stanton Wortham - 2014 - Studies in Philosophy and Education 34 (2):125-136.
    This article illustrates one way in which philosophical inquiry and empirical research can be combined to illuminate processes like learning and social identification. Over the past 20 years, my empirical work in classrooms and communities has drawn on philosophical discussions about how knowledge is interconnected with social relationships and how we should conceptualize multiple levels of explanation. Both empirical research and philosophy can be done in various ways, and I offer no comprehensive account of how the two relate. I focus (...)
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  • Machine wanting.Daniel W. McShea - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4b):679-687.
    Wants, preferences, and cares are physical things or events, not ideas or propositions, and therefore no chain of pure logic can conclude with a want, preference, or care. It follows that no pure-logic machine will ever want, prefer, or care. And its behavior will never be driven in the way that deliberate human behavior is driven, in other words, it will not be motivated or goal directed. Therefore, if we want to simulate human-style interactions with the world, we will need (...)
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  • Freedom and purpose in biology.Daniel W. McShea - 2016 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 58:64–72.
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  • What Is an Immature Science?Ruth Hibbert - 2016 - International Studies in the Philosophy of Science 30 (1):1-17.
    Cognitive and social sciences such as psychology and sociology are often described as immature sciences. But what is immaturity? According to the received view, immaturity is disunity, where disunity can usefully be cashed out in terms of having a plurality of disunified frameworks in play, where these frameworks consist of concepts, theories, goals, practices, methods, criteria for what counts as a good explanation, etc. However, there are some reasons to think that the cognitive and social sciences should be disunified in (...)
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  • Reports from the high table: Sepkoski and Ruse : The paleobiological revolution: essays on the growth of modern paleontology, University of Chicago Press, 2009.Adrian Currie - 2012 - Biology and Philosophy 27 (1):149-158.
    David Sepkoski and Michael Ruse’s edited collection The Peolobiological Revolution covers the changes in paleontological science in the last half-century. The collection should be of interest to philosophers of science (particularly those interested in non-reductive unity) as well as historians. I give an overview of the content and major themes of the volume and draw some lessons for the philosophy of science along the way. In particular, I argue that the history of paleontology demands a new approach to philosophical delineation (...)
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  • Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell.Claes Andersson & Petter Törnberg - 2019 - Biological Theory 14 (2):86-102.
    Despite remarkable empirical and methodological advances, our theoretical understanding of the evolutionary processes that made us human remains fragmented and contentious. Here, we make the radical proposition that the cultural communities within which Homo emerged may be understood as a novel exotic form of organism. The argument begins from a deep congruence between robust features of Pan community life cycles and protocell models of the origins of life. We argue that if a cultural tradition, meeting certain requirements, arises in the (...)
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  • Reconstructing design, explaining artifacts: Philosophical reflections on the design and explanation of technical artifacts.G. J. De Ridder - unknown
    Philosophers of science have by and large neglected technology. In this book, I have tried to do something about this lacuna by analyzing a few aspects of technical artifacts from a philosophical angle. The project was part of the research program "The Dual Nature of Technical Artifacts" based at Delft University of Technology in the Netherlands. Technical artifacts are both plain physical objects and objects that have been purposefully made for a purpose; which is to say they have a physical (...)
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