What is reductionism? -- Who is reading the book of life? -- Genetics : from grammar to meaning making -- A point for thought : why are organisms irreducible? -- A point for thought : does the genetic system include a meta-language? -- Immunology : from soldiers to housewives -- A point for thought : immune specificity and Brancusi's kiss -- A point for thought : reflections on the immune self -- Meaning making in language and biology -- A point (...) for thought : meaning : bridging the gap between physics and semantics -- The rest is silence -- The polysemy of the sign : a quantum lesson -- Recursive-hierarchy : a lesson from the tardigrade -- Context and memory : a lesson from funes the memorious -- Transgradience : a lesson from Bakhtin -- The poetry of living. (shrink)

Dynamics of Complex Systems is the first text describing the modern unified study of complex systems. It is designed for upper-undergraduate/beginning graduate-level students, and covers a broad range of applications in a broad array of disciplines. A central goal of this text is to develop models and modeling techniques that are useful when applied to all complex systems. This is done by adopting both analytic tools, including statistical mechanics and stochastic dynamics, and computer simulation techniques, such as cellular automata and (...) Monte Carlo. In four sets of paired, self-contained chapters, Yaneer Bar-Yam discusses complex systems in the context of neural networks, protein folding, living organisms, and finally, human civilization itself. (shrink)

NOW IN PAPERBACK"€"Starting from a collection of simple computer experiments"€"illustrated in the book by striking computer graphics"€"Stephen Wolfram shows how their unexpected results force a whole new way of looking at the operation of our universe.

What enables individually simple insects like ants to act with such precision and purpose as a group? How do trillions of individual neurons produce something as extraordinarily complex as consciousness? What is it that guides self-organizing structures like the immune system, the World Wide Web, the global economy, and the human genome? These are just a few of the fascinating and elusive questions that the science of complexity seeks to answer. In this remarkably accessible and companionable book, leading complex systems (...) scientist Melanie Mitchell provides an intimate, detailed tour of the sciences of complexity, a broad set of efforts that seek to explain how large-scale complex, organized, and adaptive behavior can emerge from simple interactions among myriad individuals. Comprehending such systems requires a wholly new approach, one that goes beyond traditional scientific reductionism and that re-maps long-standing disciplinary boundaries. Based on her work at the Santa Fe Institute and drawing on its interdisciplinary strategies, Mitchell brings clarity to the workings of complexity across a broad range of biological, technological, and social phenomena, seeking out the general principles or laws that apply to all of them. She explores as well the relationship between complexity and evolution, artificial intelligence, computation, genetics, information processing, and many other fields. Richly illustrated and vividly written, Complexity : A Guided Tour offers a comprehensive and eminently comprehensible overview of the ideas underlying complex systems science, the current research at the forefront of this field, and the prospects for the field's contribution to solving some of the most important scientific questions of our time. (shrink)

Why has the problematic of complexity appeared so late? And why would it be justified?

Complex systems are usually difficult to design and control. There are several particular methods for coping with complexity, but there is no general approach to build complex systems. In this thesis I propose a methodology to aid engineers in the design and control of complex systems. This is based on the description of systems as self-organizing. Starting from the agent metaphor, the methodology proposes a conceptual framework and a series of steps to follow to find proper mechanisms that will promote (...) elements to find solutions by actively interacting among themselves. The main premise of the methodology claims that reducing the “friction” of interactions between elements of a system will result in a higher “satisfaction” of the system, i.e. better performance. A general introduction to complex thinking is given, since designing self-organizing systems requires a non-classical thought, while practical notions of complexity and self-organization are put forward. To illustrate the methodology, I present three case studies. Self-organizing traffic light controllers are proposed and studied with multi-agent simulations, outperforming traditional methods. Methods for improving communication within self-organizing bureaucracies are advanced, introducing a simple computational model to illustrate the benefits of self-organization. In the last case study, requirements for self-organizing artifacts in an ambient intelligence scenario are discussed. Philosophical implications of the conceptual framework are also put forward. (shrink)

The science of complexity is based on a new way of thinking that stands in sharp contrast to the philosophy underlying Newtonian science, which is based on reductionism, determinism, and objective knowledge. This paper reviews the historical development of this new world view, focusing on its philosophical foundations. Determinism was challenged by quantum mechanics and chaos theory. Systems theory replaced reductionism by a scientifically based holism. Cybernetics and postmodern social science showed that knowledge is intrinsically subjective. These developments are being (...) integrated under the header of “complexity science”. Its central paradigm is the multi-agent system. Agents are intrinsically subjective and uncertain about their environment and future, but out of their local interactions, a global organization emerges. Although different philosophers, and in particular the postmodernists, have voiced similar ideas, the paradigm of complexity still needs to be fully assimilated by philosophy. This will throw a new light on old philosophical issues such as relativism, ethics and the role of the subject. (shrink)

We develop on the idea that everything is related, inside, and therefore determined by a context. This stance, which at first might seem obvious, has several important consequences. This paper first presents ideas on Contextuality, for then applying them to problems in philosophy of cognitive science. Because of space limitations, for the second part we will assume that the reader is familiar with the literature of philosophy of cognitive science, but if this is not the case, it would not be (...) a limitation for understanding the main ideas of this paper. We do not argue that Contextuality is a panaceic answer for explaining everything, but we do argue that everything is inside a context. And because this is always, we sometimes ignore it, but we believe that many problems are dissolved with a contextual approach, noticing things we ignore because of their obviousity. We first give a notion of context. We present the idea that errors are just incongruencies inside a context. We also present previous ideas of absolute being, relative being, and lessincompleteness. We state that all logics, and also truth judgements, are contextdependent, and we develop a “Context-dependant Logic”. We apply ideas of Contextuality to problems in semantics, the problem of “where is the mind”, and the study of consciousness. (shrink)

This paper discusses the benefits of describing the world as information, especially in the study of the evolution of life and cognition. Traditional studies encounter problems because it is difficult to describe life and cognition in terms of matter and energy, since their laws are valid only at the physical scale. However, if matter and energy, as well as life and cognition, are described in terms of information, evolution can be described consistently as information becoming more complex. The paper presents (...) five tentative laws of information, valid at multiple scales, which are generalizations of Darwinian, cybernetic, thermodynamic, and complexity principles. These are further used to discuss the notions of life and cognition and their evolution. (shrink)

In this chapter we want to provide philosophical tools for understanding and reasoning about complex systems. Classical thinking, which is taught at most schools and universities, has several problems for coping with complexity. We review classical thinking and its drawbacks when dealing with complexity, for then presenting ways of thinking which allow the better understanding of complex systems. Examples illustrate the ideas presented. This chapter does not deal with specific tools and techniques for managing complex systems, but we try to (...) bring forth ideas that facilitate the thinking and speaking about complex systems. (shrink)