Switch to: Citations

References in:

The Concept of Causation in Biology

Erkenntnis 78 (2):179-197 (2013)

Add references

You must login to add references.
  1. Causality: Models, Reasoning and Inference.Judea Pearl - 2000 - New York: Cambridge University Press.
    Causality offers the first comprehensive coverage of causal analysis in many sciences, including recent advances using graphical methods. Pearl presents a unified account of the probabilistic, manipulative, counterfactual and structural approaches to causation, and devises simple mathematical tools for analyzing the relationships between causal connections, statistical associations, actions and observations. The book will open the way for including causal analysis in the standard curriculum of statistics, artificial intelligence, business, epidemiology, social science and economics.
    Download  
     
    Export citation  
     
    Bookmark   685 citations  
  • Rethinking Mechanistic Explanation.Lindley Darden - 2002 - Philosophy of Science 69 (S3):342-353.
    Philosophers of science typically associate the causal‐mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon’s account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex‐systems approach avoids certain (...)
    Download  
     
    Export citation  
     
    Bookmark   207 citations  
  • Nature's capacities and their measurement.Nancy Cartwright - 1989 - New York: Oxford University Press.
    Ever since David Hume, empiricists have barred powers and capacities from nature. In this book Cartwright argues that capacities are essential in our scientific world, and, contrary to empiricist orthodoxy, that they can meet sufficiently strict demands for testability. Econometrics is one discipline where probabilities are used to measure causal capacities, and the technology of modern physics provides several examples of testing capacities (such as lasers). Cartwright concludes by applying the lessons of the book about capacities and probabilities to the (...)
    Download  
     
    Export citation  
     
    Bookmark   628 citations  
  • Explanation: a mechanist alternative.William Bechtel & Adele Abrahamsen - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):421-441.
    Explanations in the life sciences frequently involve presenting a model of the mechanism taken to be responsible for a given phenomenon. Such explanations depart in numerous ways from nomological explanations commonly presented in philosophy of science. This paper focuses on three sorts of differences. First, scientists who develop mechanistic explanations are not limited to linguistic representations and logical inference; they frequently employ diagrams to characterize mechanisms and simulations to reason about them. Thus, the epistemic resources for presenting mechanistic explanations are (...)
    Download  
     
    Export citation  
     
    Bookmark   551 citations  
  • On the notion of cause.Bertrand Russell - 1918 - In Mysticism and logic. Mineola, N.Y.: Dover Publications. pp. 171-196.
    El autor intenta mostrar que el concepto de ley es totalmente innecesario y que solo sirve para crear confusiones y generar falacias. Para ello muestra que la supuesta “ley de la causalidad” es inconsistente y que la ciencia no requiere de ella más que en una primera fase. Las ciencias maduras usan relaciones, en concreto, relaciones mediante ecuaciones diferenciales para desempe\ nar el papel que se le quiere otorgar a la ley de la causalidad. Despues de hacer esto, el autor (...)
    Download  
     
    Export citation  
     
    Bookmark   104 citations  
  • A Glimpse of the Secret Connexion: Harmonizing Mechanisms with Counterfactuals.Stathis Psillos - 2003 - Perspectives on Science 12 (3):288-319.
    Among the current philosophical attempts to understand causation two seem to be the most prominent. The first is James Woodward’s counterfactual approach; the second is the mechanistic approach advocated by Peter Machamer, Lindley Darden, Carl Craver, Jim Bogen and Stuart Glennan. The counterfactual approach takes it that causes make a difference to their effects, where this difference-making is cashed out in terms of actual and counterfactual interventions. The mechanistic approach takes it that two events are causally related if and only (...)
    Download  
     
    Export citation  
     
    Bookmark   61 citations  
  • Review of Woodward, Making Things Happen. [REVIEW]Michael Strevens - 2007 - Philosophy and Phenomenological Research 74 (1):233-249.
    Download  
     
    Export citation  
     
    Bookmark   600 citations  
  • Making things happen: a theory of causal explanation.James F. Woodward - 2003 - New York: Oxford University Press.
    Woodward's long awaited book is an attempt to construct a comprehensive account of causation explanation that applies to a wide variety of causal and explanatory claims in different areas of science and everyday life. The book engages some of the relevant literature from other disciplines, as Woodward weaves together examples, counterexamples, criticisms, defenses, objections, and replies into a convincing defense of the core of his theory, which is that we can analyze causation by appeal to the notion of manipulation.
    Download  
     
    Export citation  
     
    Bookmark   1623 citations  
  • Causation in biology: Stability, specificity, and the choice of levels of explanation.James Woodward - 2010 - Biology and Philosophy 25 (3):287-318.
    This paper attempts to elucidate three characteristics of causal relationships that are important in biological contexts. Stability has to do with whether a causal relationship continues to hold under changes in background conditions. Proportionality has to do with whether changes in the state of the cause “line up” in the right way with changes in the state of the effect and with whether the cause and effect are characterized in a way that contains irrelevant detail. Specificity is connected both to (...)
    Download  
     
    Export citation  
     
    Bookmark   266 citations  
  • Difference mechanisms: Explaining variation with mechanisms.James Tabery - 2009 - Biology and Philosophy 24 (5):645-664.
    Philosophers of science have developed an account of causal-mechanical explanation that captures regularity, but this account neglects variation. In this article I amend the philosophy of mechanisms to capture variation. The task is to explicate the relationship between regular causal mechanisms responsible for individual development and causes of variation responsible for variation in populations. As it turns out, disputes over this relationship have rested at the heart of the nature–nurture debate. Thus, an explication of the relationship between regular causal mechanisms (...)
    Download  
     
    Export citation  
     
    Bookmark   20 citations  
  • Review of Woodward, M aking Things Happen. [REVIEW]Michael Strevens - 2007 - Philosophy and Phenomenological Research 74 (1):233–249.
    The concept of causation plays a central role in many philosophical theories, and yet no account of causation has gained widespread acceptance among those who have investigated its foundations. Theories based on laws, counterfactuals, physical processes, and probabilistic dependence and independence relations (the list is by no means exhaustive) have all received detailed treatment in recent years---{}and, while no account has been entirely successful, it is generally agreed that the concept has been greatly clari{}ed by the attempts. In this magni{}cent (...)
    Download  
     
    Export citation  
     
    Bookmark   48 citations  
  • Functional stability and systems level causation.Anders Strand & Gry Oftedal - 2009 - Philosophy of Science 76 (5):809-820.
    A wide range of gene knockout experiments shows that functional stability is an important feature of biological systems. On this backdrop, we present an argument for higher‐level causation based on counterfactual dependence. Furthermore, we sketch a metaphysical picture providing resources to explain the metaphysical nature of functional stability, higher‐level causation, and the relevant notion of levels. Our account aims to clarify the role empirical results and philosophical assumptions should play in debates about reductionism and higher‐level causation. It thereby contributes to (...)
    Download  
     
    Export citation  
     
    Bookmark   11 citations  
  • Interpreting causality in the health sciences.Federica Russo & Jon Williamson - 2007 - International Studies in the Philosophy of Science 21 (2):157 – 170.
    We argue that the health sciences make causal claims on the basis of evidence both of physical mechanisms, and of probabilistic dependencies. Consequently, an analysis of causality solely in terms of physical mechanisms or solely in terms of probabilistic relationships, does not do justice to the causal claims of these sciences. Yet there seems to be a single relation of cause in these sciences - pluralism about causality will not do either. Instead, we maintain, the health sciences require a theory (...)
    Download  
     
    Export citation  
     
    Bookmark   200 citations  
  • Correlational Data, Causal Hypotheses, and Validity.Federica Russo - 2011 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 42 (1):85 - 107.
    A shared problem across the sciences is to make sense of correlational data coming from observations and/or from experiments. Arguably, this means establishing when correlations are causal and when they are not. This is an old problem in philosophy. This paper, narrowing down the scope to quantitative causal analysis in social science, reformulates the problem in terms of the validity of statistical models. Two strategies to make sense of correlational data are presented: first, a 'structural strategy', the goal of which (...)
    Download  
     
    Export citation  
     
    Bookmark   11 citations  
  • A glimpse of the.Stathis Psillos - 2004 - Perspectives on Science 12 (3):288-319.
    : Among the current philosophical accounts of causation two are the most prominent. The first is James Woodward's interventionist counterfactual approach; the second is the mechanistic approach advocated by Peter Machamer, Lindley Darden, Carl Craver, Jim Bogen and Stuart Glennan. Thecounterfactual approach takes it that causes make a difference to their effects, where this difference-making is cashed out in terms of actual and counterfactual interventions. The mechanistic approach takes it that two events are causally related if and only if there (...)
    Download  
     
    Export citation  
     
    Bookmark   22 citations  
  • Is there an independent principle of causality in physics.John D. Norton - 2009 - British Journal for the Philosophy of Science 60 (3):475-486.
    Mathias Frisch has argued that the requirement that electromagnetic dispersion processes are causal adds empirical content not found in electrodynamic theory. I urge that this attempt to reconstitute a local principle of causality in physics fails. An independent principle is not needed to recover the results of dispersion theory. The use of ‘causality conditions’ proves to be the mere adding of causal labels to an already presumed fact. If instead one seeks a broader, independently formulated grounding for the conditions, that (...)
    Download  
     
    Export citation  
     
    Bookmark   28 citations  
  • Is There an Independent Principle of Causality in Physics?John D. Norton - 2009 - British Journal for the Philosophy of Science 60 (3):475-486.
    Mathias Frisch has argued that the requirement that electromagnetic dispersion processes are causal adds empirical content not found in electrodynamic theory. I urge that this attempt to reconstitute a local principle of causality in physics fails. An independent principle is not needed to recover the results of dispersion theory. The use of ‘causality conditions’ proves to be the mere adding of causal labels to an already presumed fact. If instead one seeks a broader, independently formulated grounding for the conditions, that (...)
    Download  
     
    Export citation  
     
    Bookmark   23 citations  
  • Thinking about mechanisms.Peter Machamer, Lindley Darden & Carl F. Craver - 2000 - Philosophy of Science 67 (1):1-25.
    The concept of mechanism is analyzed in terms of entities and activities, organized such that they are productive of regular changes. Examples show how mechanisms work in neurobiology and molecular biology. Thinking in terms of mechanisms provides a new framework for addressing many traditional philosophical issues: causality, laws, explanation, reduction, and scientific change.
    Download  
     
    Export citation  
     
    Bookmark   1328 citations  
  • What is a mechanism? Thinking about mechanisms across the sciences.Phyllis Illari & Jon Williamson - 2012 - European Journal for Philosophy of Science 2 (1):119-135.
    After a decade of intense debate about mechanisms, there is still no consensus characterization. In this paper we argue for a characterization that applies widely to mechanisms across the sciences. We examine and defend our disagreements with the major current contenders for characterizations of mechanisms. Ultimately, we indicate that the major contenders can all sign up to our characterization.
    Download  
     
    Export citation  
     
    Bookmark   187 citations  
  • Rethinking mechanistic explanation.Stuart Glennan - 2002 - Proceedings of the Philosophy of Science Association 2002 (3):S342-353.
    Philosophers of science typically associate the causal-mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon's account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex-systems approach avoids certain (...)
    Download  
     
    Export citation  
     
    Bookmark   394 citations  
  • Rethinking Mechanistic Explanation.Stuart Glennan - 2002 - Philosophy of Science 69 (S3):S342-S353.
    Philosophers of science typically associate the causal-mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon's account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex-systems approach avoids certain (...)
    Download  
     
    Export citation  
     
    Bookmark   407 citations  
  • Mechanisms and the nature of causation.Stuart S. Glennan - 1996 - Erkenntnis 44 (1):49--71.
    In this paper I offer an analysis of causation based upon a theory of mechanisms-complex systems whose internal parts interact to produce a system's external behavior. I argue that all but the fundamental laws of physics can be explained by reference to mechanisms. Mechanisms provide an epistemologically unproblematic way to explain the necessity which is often taken to distinguish laws from other generalizations. This account of necessity leads to a theory of causation according to which events are causally related when (...)
    Download  
     
    Export citation  
     
    Bookmark   432 citations  
  • Mechanisms, Causes, and the Layered Model of the World.Stuart Glennan - 2010 - Philosophy and Phenomenological Research 81 (2):362-381.
    Most philosophical accounts of causation take causal relations to obtain between individuals and events in virtue of nomological relations between properties of these individuals and events. Such views fail to take into account the consequences of the fact that in general the properties of individuals and events will depend upon mechanisms that realize those properties. In this paper I attempt to rectify this failure, and in so doing to provide an account of the causal relevance of higher-level properties. I do (...)
    Download  
     
    Export citation  
     
    Bookmark   58 citations  
  • Ephemeral Mechanisms and Historical Explanation.Stuart Glennan - 2010 - Erkenntnis 72 (2):251-266.
    While much of the recent literature on mechanisms has emphasized the superiority of mechanisms and mechanistic explanation over laws and nomological explanation, paradigmatic mechanisms—e.g., clocks or synapses—actually exhibit a great deal of stability in their behavior. And while mechanisms of this kind are certainly of great importance, there are many events that do not occur as a consequence of the operation of stable mechanisms. Events of natural and human history are often the consequence of causal processes that are ephemeral and (...)
    Download  
     
    Export citation  
     
    Bookmark   47 citations  
  • Phil Dowe, Physical Causation. [REVIEW]Phil Dowe - 2002 - Erkenntnis 56 (2):258-263.
    Download  
     
    Export citation  
     
    Bookmark   232 citations  
  • Mental Mechanisms: Philosophical Perspectives on Cognitive Neuroscience.William Bechtel - 2007 - Psychology Press.
    A variety of scientific disciplines have set as their task explaining mental activities, recognizing that in some way these activities depend upon our brain. But, until recently, the opportunities to conduct experiments directly on our brains were limited. As a result, research efforts were split between disciplines such as cognitive psychology, linguistics, and artificial intelligence that investigated behavior, while disciplines such as neuroanatomy, neurophysiology, and genetics experimented on the brains of non-human animals. In recent decades these disciplines integrated, and with (...)
    Download  
     
    Export citation  
     
    Bookmark   241 citations  
  • The philosophy of biology.David L. Hull & Michael Ruse (eds.) - 1973 - New York: Oxford University Press.
    Drawing on work of the past decade, this volume brings together articles from the philosophy, history, and sociology of science, and many other branches of the biological sciences. The volume delves into the latest theoretical controversies as well as burning questions of contemporary social importance. The issues considered include the nature of evolutionary theory, biology and ethics, the challenge from religion, and the social implications of biology today (in particular the Human Genome Project).
    Download  
     
    Export citation  
     
    Bookmark   182 citations  
  • Causation and Counterfactuals.John Collins, Ned Hall & Laurie Paul (eds.) - 2004 - MIT Press.
    Thirty years after Lewis's paper, this book brings together some of the most important recent work connecting—or, in some cases, disputing the connection ...
    Download  
     
    Export citation  
     
    Bookmark   157 citations  
  • Physical Causation.Phil Dowe - 2000 - New York: Cambridge University Press.
    This book, published in 2000, is a clear account of causation based firmly in contemporary science. Dowe discusses in a systematic way, a positive account of causation: the conserved quantities account of causal processes which he has been developing over the last ten years. The book describes causal processes and interactions in terms of conserved quantities: a causal process is the worldline of an object which possesses a conserved quantity, and a causal interaction involves the exchange of conserved quantities. Further, (...)
    Download  
     
    Export citation  
     
    Bookmark   228 citations  
  • On the Notion of Cause.Bertrand Russell - 1913 - Proceedings of the Aristotelian Society 13:1-26.
    Download  
     
    Export citation  
     
    Bookmark   167 citations  
  • Aristotelian powers: without them, what would modern science do?Nancy Cartwright & John Pemberton - 2013 - In John Greco & Ruth Groff (eds.), Powers and Capacities in Philosophy: the New Aristotelianism. London, U.K.: Routledge. pp. 93-112.
    The volume brings together for the first time original essays by leading philosophers working on powers in relation to metaphysics, philosophy of natural and social science, philosophy of mind and action, epistemology, ethics and social and political philosophy. In each area, the concern is to show how a commitment to real causal powers affects discussion at the level in question. In metaphysics, for example, realism about powers is now recognized as providing an alternative to orthodox accounts of causation, modality, properties (...)
    Download  
     
    Export citation  
     
    Bookmark   20 citations  
  • Inferring causation in epidemiology: mechanisms, black boxes, and contrasts.Alex Broadbent - 2011 - In Phyllis McKay Illari, Federica Russo & Jon Williamson (eds.), Causality in the Sciences. Oxford University Press. pp. 45--69.
    This chapter explores the idea that causal inference is warranted if and only if the mechanism underlying the inferred causal association is identified. This mechanistic stance is discernible in the epidemiological literature, and in the strategies adopted by epidemiologists seeking to establish causal hypotheses. But the exact opposite methodology is also discernible, the black box stance, which asserts that epidemiologists can and should make causal inferences on the basis of their evidence, without worrying about the mechanisms that might underlie their (...)
    Download  
     
    Export citation  
     
    Bookmark   33 citations  
  • Singular and General Causal Relations: A Mechanist Perspective.Stuart Glennan - 2011 - In Phyllis McKay Illari, Federica Russo & Jon Williamson (eds.), Causality in the Sciences. Oxford University Press.
    My aim in this paper is to make a case for the singularist view from the perspective of a mechanical theory of causation, and to explain what, from this perspective, causal generalizations mean, and what role they play within the mechanical theory.
    Download  
     
    Export citation  
     
    Bookmark   26 citations  
  • Two concepts of causation.Ned Hall - 2004 - In John Collins, Ned Hall & Laurie Paul (eds.), Causation and Counterfactuals. MIT Press. pp. 225-276.
    Download  
     
    Export citation  
     
    Bookmark   329 citations  
  • Mechanisms.Stuart Glennan - 2009 - In Helen Beebee, Christopher Hitchcock & Peter Menzies (eds.), The Oxford Handbook of Causation. Oxford University Press.
    Mechanism is undoubtedly a causal concept, in the sense that ordinary definitions and philosophical analyses explicate the concept in terms of other causal concepts such as production and interaction. Given this fact, many philosophers have supposed that analyses of the concept of mechanism, while they might appeal to philosophical theories about the nature of causation, could do little to inform such theories. On the other hand, methods of causal inference and explanation appeal to mechanisms. Discovering a mechanism is the gold (...)
    Download  
     
    Export citation  
     
    Bookmark   33 citations  
  • The environment and disease: association or causation?Austin Bradford Hill - 1965 - Proceedings of the Royal Society of Medicine 58 (5):295-300.
    Download  
     
    Export citation  
     
    Bookmark   120 citations  
  • On the notion of cause.B. Russell - 1912 - Scientia 7 (13):317.
    Download  
     
    Export citation  
     
    Bookmark   214 citations  
  • Physical Causation.Phil Dowe - 2003 - Philosophy and Phenomenological Research 67 (1):244-248.
    Download  
     
    Export citation  
     
    Bookmark   276 citations  
  • Causality and evidence discovery in epidemiology.Michael Joffe - 2011 - In Dennis Dieks, Wenceslao Gonzalo, Thomas Uebel, Stephan Hartmann & Marcel Weber (eds.), Explanation, Prediction, and Confirmation. Springer. pp. 153--166.
    Download  
     
    Export citation  
     
    Bookmark   3 citations