In this paper, we introduce a quasi-set theory without atoms. The quasi-sets (qsets) can have as elements completely indiscernible things which do not turn out to be the very same thing as it would be implied if its underlying logic was classical logic. A quasi-set can have a cardinal, called its quasi-cardinal, but this is made so that, at least for the finite case, the quasi-cardinal is not an ordinal, and hence the indistinguishable elements of a quasi-set cannot be (...) ordered. In the last sections, we show how the theory can be used to ground a quantum metaphysics of properties, which sees the quantum entities as bundles of properties, and we also introduce a new approach for the use of quantifiers in quantum physics. (shrink)