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  1. Function, role and disposition in Basic Formal Ontology.Robert Arp & Barry Smith - 2008 - Proceedings of Bio-Ontologies Workshop, Intelligent Systems for Molecular Biology (ISMB), Toronto.
    Numerous research groups are now utilizing Basic Formal Ontology as an upper-level framework to assist in the organization and integration of biomedical information. This paper provides elucidation of the three existing BFO subcategories of realizable entity, namely function, role, and disposition. It proposes one further sub-category of tendency, and considers the merits of recognizing two sub-categories of function for domain ontologies, namely, artifactual and biological function. The motivation is to help advance the coherent ontological treatment of functions, roles, and dispositions, (...)
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  • Standard Aberration: Cancer Biology and the Modeling Account of Normal Function.Seth Goldwasser - 2023 - Biology and Philosophy 38 (1):(4) 1-33.
    Cancer biology features the ascription of normal functions to parts of cancers. At least some ascriptions of function in cancer biology track local normality of parts within the global abnormality of the aberration to which those parts belong. That is, cancer biologists identify as functions activities that, in some sense, parts of cancers are supposed to perform, despite cancers themselves having no purpose. The present paper provides a theory to accommodate these normal function ascriptions—I call it the Modeling Account of (...)
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  • Preface.Raphael van Riel & Albert Newen - 2011 - Philosophia Naturalis 48 (1):5-8.
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  • (1 other version)Life and the Homeostatic Organization View of Biological Phenomena.Robert Arp - 2008 - Cosmos and History : The Journal of Natural and Social Philosophy 4 (1-2):260-285.
    p style="text-indent: 0cm; line-height: normal" class="MsoBodyTextIndent3"span style="font-size: 11pt"In this paper, I argue that starting with the organelles that constitute a cellmdash;and continuing up the hierarchy of components in processes and subsystems of an organismmdash;there exist clear instances of emergent biological phenomena that can be considered ldquo;livingrdquo; entities.spannbsp; /spanThese components and their attending processes are living emergent phenomena because of the way in which the components are organized to maintain homeostasis of the organism at the various levels in the hierarchy.spannbsp; /spanI (...)
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  • Environmental Ethics.Roberta L. Millstein - 2013 - In Kostas Kampourakis (ed.), The Philosophy of Biology: a Companion for Educators. Dordrecht: Springer.
    A number of areas of biology raise questions about what is of value in the natural environment and how we ought to behave towards it: conservation biology, environmental science, and ecology, to name a few. Based on my experience teaching students from these and similar majors, I argue that the field of environmental ethics has much to teach these students. They come to me with pent-up questions and a feeling that more is needed to fully engage in their subjects, and (...)
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  • Replacing Functional Reduction with Mechanistic Explanation.Markus I. Eronen - 2011 - Philosophia Naturalis 48 (1):125-153.
    Recently the functional model of reduction has become something like the standard model of reduction in philosophy of mind. In this paper, I argue that the functional model fails as an account of reduction due to problems related to three key concepts: functionalization, realization and causation. I further argue that if we try to revise the model in order to make it more coherent and scientifically plausible, the result is merely a simplified version of what in philosophy of science is (...)
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  • Conservative Reduction of Biology.Christian Sachse - 2011 - Philosophia Naturalis 48 (1):33-65.
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  • Circadian clocks signal future states of affairs.Brant Pridmore - 2022 - Biology and Philosophy 37 (6):1-24.
    On receiver-based teleosemantic theories of representation, the chemical states of the circadian clocks in animal, plant and cyanobacterial cells constitute signals of future states of affairs, often the rising and setting of the sun. This signalling is much more rigid than sophisticated representational systems like human language, but it is not simple on all dimensions. In most organisms the clock regulates many different circadian rhythms. The process of entrainment ensures that the mapping between chemical states of the clock and the (...)
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