Havstad and Smith (2019) argue that Lakatos’ “methodology of scientific research programs” (MSRP) is a promising philosophical framework for explaining the perceived empirical success of the hypothesis that birds are maniraptoran theropod dinosaurs, and the perceived empirical failures or stagnation of alternatives to that hypothesis. These conclusions are rejected: Havstad and Smith’s account of the alternative “research programs” inadequately characterizes criticism of the hypothesis that birds are maniraptoran theropods and they neither offer sufficient modifications to MSRP to correct its known (...) difficulties in deriving logically or empirically satisfactory criteria for the assessment and preferential selection of “research programs” from historiographical data, nor proposals to mitigate its tendency to promote confirmation bias and dogmatism. Independent flight loss, an important problem in systematic ornithology with implications for the origin of birds, provides a supplementary demonstration of how the application of MSRP in the present context would tend systematically to mislead investigations of the evolutionary history of birds by promoting an uncritical perspective. Given these difficulties, MSRP is an unacceptable philosophical framework for evaluating alternative hypotheses for the origin of birds. (shrink)