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What Is Wrong With Bayes Nets?

The Monist 84 (2):242-264 (2001)

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  1. E-Synthesis: A Bayesian Framework for Causal Assessment in Pharmacosurveillance.Francesco De Pretis, Jürgen Landes & Barbara Osimani - 2019 - Frontiers in Pharmacology 10.
    Background: Evidence suggesting adverse drug reactions often emerges unsystematically and unpredictably in form of anecdotal reports, case series and survey data. Safety trials and observational studies also provide crucial information regarding the (un-)safety of drugs. Hence, integrating multiple types of pharmacovigilance evidence is key to minimising the risks of harm. Methods: In previous work, we began the development of a Bayesian framework for aggregating multiple types of evidence to assess the probability of a putative causal link between drugs and side (...)
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  • SAT-based causal discovery under weaker assumptions. Zhalama, Jiji Zhang, Frederick Eberhardt & Wolfgang Mayer - 2017 - In Zhalama, Jiji Zhang, Frederick Eberhardt & Wolfgang Mayer (eds.), Proceedings of the 33rd Conference on Uncertainty in Artificial Intelligence (UAI). Association for Uncertainty in Artificial Intelligence (AUAI).
    Using the flexibility of recently developed methods for causal discovery based on Boolean satisfiability solvers, we encode a variety of assumptions that weaken the Faithfulness assumption. The encoding results in a number of SAT-based algorithms whose asymptotic correctness relies on weaker conditions than are standardly assumed. This implementation of a whole set of assumptions in the same platform enables us to systematically explore the effect of weakening the Faithfulness assumption on causal discovery. An important effect, suggested by simulation results, is (...)
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  • (1 other version)What's Wrong With Our Theories of Evidence?Julian Reiss - 2014 - Theoria 29 (2):283-306.
    This paper reviews all major theories of evidence such as the Bayesian theory, hypothetico-deductivism, satisfaction theories, error-statistics, Achinstein's explanationist theory and Cartwright's argument theory. All these theories fail to take adequate account of the context in which a hypothesis is established and used. It is argued that the context of an inquiry determines important facts about what evidence is, and how much and what kind has to be collected to establish a hypothesis for a given purpose.
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  • Initial Conditions as Exogenous Factors in Spatial Explanation.Clint Ballinger - 2008 - Dissertation, University of Cambridge
    This dissertation shows how initial conditions play a special role in the explanation of contingent and irregular outcomes, including, in the form of geographic context, the special case of uneven development in the social sciences. The dissertation develops a general theory of this role, recognizes its empirical limitations in the social sciences, and considers how it might be applied to the question of uneven development. The primary purpose of the dissertation is to identify and correct theoretical problems in the study (...)
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  • The Similarity of Causal Inference in Experimental and Non‐experimental Studies.Richard Scheines - 2005 - Philosophy of Science 72 (5):927-940.
    For nearly as long as the word “correlation” has been part of statistical parlance, students have been warned that correlation does not prove causation, and that only experimental studies, e.g., randomized clinical trials, can establish the existence of a causal relationship. Over the last few decades, somewhat of a consensus has emerged between statisticians, computer scientists, and philosophers on how to represent causal claims and connect them to probabilistic relations. One strand of this work studies the conditions under which evidence (...)
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  • Suppes’ probabilistic theory of causality and causal inference in economics.Julian Reiss - 2016 - Journal of Economic Methodology 23 (3):289-304.
    This paper examines Patrick Suppes’ probabilistic theory of causality understood as a theory of causal inference, and draws some lessons for empirical economics and contemporary debates in the foundations of econometrics. It argues that a standard method of empirical economics, multiple regression, is inadequate for most but the simplest applications, that the Bayes’ nets approach, which can be understood as a generalisation of Suppes’ theory, constitutes a considerable improvement but is still subject to important limitations, and that the currently fashionable (...)
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  • Green and grue causal variables.Frederick Eberhardt - 2016 - Synthese 193 (4).
    The causal Bayes net framework specifies a set of axioms for causal discovery. This article explores the set of causal variables that function as relata in these axioms. Spirtes showed how a causal system can be equivalently described by two different sets of variables that stand in a non-trivial translation-relation to each other, suggesting that there is no “correct” set of causal variables. I extend Spirtes’ result to the general framework of linear structural equation models and then explore to what (...)
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  • The three faces of faithfulness.Jiji Zhang & Peter Spirtes - 2016 - Synthese 193 (4):1011-1027.
    In the causal inference framework of Spirtes, Glymour, and Scheines, inferences about causal relationships are made from samples from probability distributions and a number of assumptions relating causal relations to probability distributions. The most controversial of these assumptions is the Causal Faithfulness Assumption, which roughly states that if a conditional independence statement is true of a probability distribution generated by a causal structure, it is entailed by the causal structure and not just for particular parameter values. In this paper we (...)
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  • Przyczyna i Wyjaśnianie: Studium Z Filozofii i Metodologii Nauk.Paweł Kawalec - 2006 - Lublin: Wydawnictwo KUL.
    Przedmowa Problematyka związana z zależnościami przyczynowymi, ich modelowaniem i odkrywa¬niem, po długiej nieobecności w filozofii i metodologii nauk, budzi współcześnie duże zainteresowanie. Wiąże się to przede wszystkim z dynamicznym rozwojem, zwłaszcza od lat 1990., technik obli¬czeniowych. Wypracowane w tym czasie sieci bayesowskie uznaje się za matematyczny język przyczynowości. Pozwalają one na daleko idącą auto¬matyzację wnioskowań, co jest także zachętą do podjęcia prób algorytmiza¬cji odkrywania przyczyn. Na potrzeby badań naukowych, które pozwalają na przeprowadzenie eksperymentu z randomizacją, standardowe metody ustalania zależności przyczynowych (...)
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  • A comparison of three Occam’s razors for Markovian causal models.Jiji Zhang - 2013 - British Journal for the Philosophy of Science 64 (2):423-448.
    The framework of causal Bayes nets, currently influential in several scientific disciplines, provides a rich formalism to study the connection between causality and probability from an epistemological perspective. This article compares three assumptions in the literature that seem to constrain the connection between causality and probability in the style of Occam's razor. The trio includes two minimality assumptions—one formulated by Spirtes, Glymour, and Scheines (SGS) and the other due to Pearl—and the more well-known faithfulness or stability assumption. In terms of (...)
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  • Should causal models always be Markovian? The case of multi-causal forks in medicine.Donald Gillies & Aidan Sudbury - 2013 - European Journal for Philosophy of Science 3 (3):275-308.
    The development of causal modelling since the 1950s has been accompanied by a number of controversies, the most striking of which concerns the Markov condition. Reichenbach's conjunctive forks did satisfy the Markov condition, while Salmon's interactive forks did not. Subsequently some experts in the field have argued that adequate causal models should always satisfy the Markov condition, while others have claimed that non-Markovian causal models are needed in some cases. This paper argues for the second position by considering the multi-causal (...)
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  • Causal reasoning, causal probabilities, and conceptions of causation.Isabelle Drouet - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (4):761-768.
    The present paper deals with the tools that can be used to represent causation and to reason about it and, specifically, with their diversity. It focuses on so-called “causal probabilities”—that is, probabilities of effects given one of their causes—and critically surveys a recent paper in which Joyce argues that the values of these probabilities do not depend on one’s conception of causation. I first establish a stronger independence claim: I show that the very definition of causal probabilities is independent of (...)
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  • Introduction to the epistemology of causation.Frederick Eberhardt - 2009 - Philosophy Compass 4 (6):913-925.
    This survey presents some of the main principles involved in discovering causal relations. They belong to a large array of possible assumptions and conditions about causal relations, whose various combinations limit the possibilities of acquiring causal knowledge in different ways. How much and in what detail the causal structure can be discovered from what kinds of data depends on the particular set of assumptions one is able to make. The assumptions considered here provide a starting point to explore further the (...)
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  • Interventions and causal inference.Frederick Eberhardt & Richard Scheines - 2007 - Philosophy of Science 74 (5):981-995.
    The literature on causal discovery has focused on interventions that involve randomly assigning values to a single variable. But such a randomized intervention is not the only possibility, nor is it always optimal. In some cases it is impossible or it would be unethical to perform such an intervention. We provide an account of ‘hard' and ‘soft' interventions and discuss what they can contribute to causal discovery. We also describe how the choice of the optimal intervention(s) depends heavily on the (...)
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  • Detection of unfaithfulness and robust causal inference.Jiji Zhang & Peter Spirtes - 2008 - Minds and Machines 18 (2):239-271.
    Much of the recent work on the epistemology of causation has centered on two assumptions, known as the Causal Markov Condition and the Causal Faithfulness Condition. Philosophical discussions of the latter condition have exhibited situations in which it is likely to fail. This paper studies the Causal Faithfulness Condition as a conjunction of weaker conditions. We show that some of the weaker conjuncts can be empirically tested, and hence do not have to be assumed a priori. Our results lead to (...)
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  • Causation: One word, many things.Nancy Cartwright - 2004 - Philosophy of Science 71 (5):805-819.
    We currently have on offer a variety of different theories of causation. Many are strikingly good, providing detailed and plausible treatments of exemplary cases; and all suffer from clear counterexamples. I argue that, contra Hume and Kant, this is because causation is not a single, monolithic concept. There are different kinds of causal relations imbedded in different kinds of systems, readily described using thick causal concepts. Our causal theories pick out important and useful structures that fit some familiar cases—cases we (...)
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  • Simpson’s paradox beyond confounding.Zili Dong, Weixin Cai & Shimin Zhao - 2024 - European Journal for Philosophy of Science 14 (3):1-22.
    Simpson’s paradox (SP) is a statistical phenomenon where the association between two variables reverses, disappears, or emerges, after conditioning on a third variable. It has been proposed (by, e.g., Judea Pearl) that SP should be analyzed using the framework of graphical causal models (i.e., causal DAGs) in which SP is diagnosed as a symptom of confounding bias. This paper contends that this confounding-based analysis cannot fully capture SP: there are cases of SP that cannot be explained away in terms of (...)
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  • Response to Henschen: causal pluralism in macroeconomics.Mariusz Maziarz & Robert Mróz - 2019 - Journal of Economic Methodology 27 (2):164-178.
    In his recent paper in the Journal of Economic Methodology, Tobias Henschen puts forth a manipulationist definition of macroeconomic causality that strives for adequacy. As the notion of ‘adequacy’...
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  • Discovering Quantum Causal Models.Sally Shrapnel - 2019 - British Journal for the Philosophy of Science 70 (1):1-25.
    Costa and Shrapnel have recently proposed an interventionist theory of quantum causation. The formalism generalizes the classical methods of Pearl and allows for the discovery of quantum causal structure via localized interventions. Classical causal structure is presented as a special case of this more general framework. I introduce the account and consider whether this formalism provides a causal explanation for the Bell correlations.
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  • Concrete Causation: About the Structures of Causal Knowledge.Roland Poellinger - 2012 - Dissertation, Lmu Munich
    Concrete Causation centers about theories of causation, their interpretation, and their embedding in metaphysical-ontological questions, as well as the application of such theories in the context of science and decision theory. The dissertation is divided into four chapters, that firstly undertake the historical-systematic localization of central problems (chapter 1) to then give a rendition of the concepts and the formalisms underlying David Lewis' and Judea Pearl's theories (chapter 2). After philosophically motivated conceptual deliberations Pearl's mathematical-technical framework is drawn on for (...)
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  • The Oxford Handbook of Causal Reasoning.Michael Waldmann (ed.) - 2017 - Oxford, England: Oxford University Press.
    Causal reasoning is one of our most central cognitive competencies, enabling us to adapt to our world. Causal knowledge allows us to predict future events, or diagnose the causes of observed facts. We plan actions and solve problems using knowledge about cause-effect relations. Without our ability to discover and empirically test causal theories, we would not have made progress in various empirical sciences. In the past decades, the important role of causal knowledge has been discovered in many areas of cognitive (...)
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  • Causal Bayes nets as psychological theories of causal reasoning: evidence from psychological research.York Hagmayer - 2016 - Synthese 193 (4):1107-1126.
    Causal Bayes nets have been developed in philosophy, statistics, and computer sciences to provide a formalism to represent causal structures, to induce causal structure from data and to derive predictions. Causal Bayes nets have been used as psychological theories in at least two ways. They were used as rational, computational models of causal reasoning and they were used as formal models of mental causal models. A crucial assumption made by them is the Markov condition, which informally states that variables are (...)
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  • Modelling mechanisms with causal cycles.Brendan Clarke, Bert Leuridan & Jon Williamson - 2014 - Synthese 191 (8):1-31.
    Mechanistic philosophy of science views a large part of scientific activity as engaged in modelling mechanisms. While science textbooks tend to offer qualitative models of mechanisms, there is increasing demand for models from which one can draw quantitative predictions and explanations. Casini et al. (Theoria 26(1):5–33, 2011) put forward the Recursive Bayesian Networks (RBN) formalism as well suited to this end. The RBN formalism is an extension of the standard Bayesian net formalism, an extension that allows for modelling the hierarchical (...)
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  • What is right with 'bayes net methods' and what is wrong with 'hunting causes and using them'?Clark Glymour - 2010 - British Journal for the Philosophy of Science 61 (1):161-211.
    Nancy Cartwright's recent criticisms of efforts and methods to obtain causal information from sample data using automated search are considered. In addition to reviewing that effort, I argue that almost all of her criticisms are false and rest on misreading, overgeneralization, or neglect of the relevant literature.
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  • Quantum Causal Models, Faithfulness, and Retrocausality.Peter W. Evans - 2018 - British Journal for the Philosophy of Science 69 (3):745-774.
    Wood and Spekkens argue that any causal model explaining the EPRB correlations and satisfying the no-signalling constraint must also violate the assumption that the model faithfully reproduces the statistical dependences and independences—a so-called ‘fine-tuning’ of the causal parameters. This includes, in particular, retrocausal explanations of the EPRB correlations. I consider this analysis with a view to enumerating the possible responses an advocate of retrocausal explanations might propose. I focus on the response of Näger, who argues that the central ideas of (...)
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  • Causation, Coherence and Concepts : a Collection of Essays.Wolfgang Spohn - unknown
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  • (1 other version)What’s Wrong With Our Theories of Evidence?Julian Reiss - 2014 - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia 29 (2):283-306.
    This paper surveys and critically assesses existing theories of evidence with respect to four desiderata. A good theory of evidence should be both a theory of evidential support (i.e., be informative about what kinds of facts speak in favour of a hypothesis), and of warrant (i.e., be informative about how strongly a given set of facts speaks in favour of the hypothesis), it should apply to the non-ideal cases in which scientists typically find themselves, and it should be ‘descriptively adequate’, (...)
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  • Is determinism more favorable than indeterminism for the causal Markov condition?Isabelle Drouet - 2009 - Philosophy of Science 76 (5):662-675.
    The present text comments on Steel 2005 , in which the author claims to extend from the deterministic to the general case, the result according to which the causal Markov condition is satisfied by systems with jointly independent exogenous variables. I show that Steel’s claim cannot be accepted unless one is prepared to abandon standard causal modeling terminology. Correlatively, I argue that the most fruitful aspect of Steel 2005 consists in a realist conception of error terms, and I show how (...)
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  • Against modularity, the causal Markov condition, and any link between the two: Comments on Hausman and Woodward.Nancy Cartwright - 2002 - British Journal for the Philosophy of Science 53 (3):411-453.
    In their rich and intricate paper ‘Independence, Invariance, and the Causal Markov Condition’, Daniel Hausman and James Woodward ([1999]) put forward two independent theses, which they label ‘level invariance’ and ‘manipulability’, and they claim that, given a specific set of assumptions, manipulability implies the causal Markov condition. These claims are interesting and important, and this paper is devoted to commenting on them. With respect to level invariance, I argue that Hausman and Woodward's discussion is confusing because, as I point out, (...)
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  • Dispositional versus epistemic causality.Jon Williamson - 2006 - Minds and Machines 16 (3):259-276.
    I put forward several desiderata that a philosophical theory of causality should satisfy: it should account for the objectivity of causality, it should underpin formalisms for causal reasoning, it should admit a viable epistemology, it should be able to cope with the great variety of causal claims that are made, and it should be ontologically parsimonious. I argue that Nancy Cartwright’s dispositional account of causality goes part way towards meeting these criteria but is lacking in important respects. I go on (...)
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  • El estatus epistémico de Los experimentos mentales en ciencias fácticas.Bruno Borge & Guadalupe Mettini - 2018 - Kriterion: Journal of Philosophy 59 (140):341-364.
    RESUMEN Un experimento mental en ciencias fácticas consiste en la representación de un escenario imaginario. A partir de la presentación de condiciones iniciales y la postulación de una situación hipotética o contrafáctica, se solicita al lector que realice mentalmente alguna operación, manipule ciertas variables o ponga en funcionamiento algún aparato o instrumento. En virtud de este ejercicio sería posible, en principio, obtener nuevo conocimiento acerca de algún aspecto del mundo natural. El debate acerca de las funciones de los experimentos mentales (...)
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  • The Structure of Scientific Theories, Explanation, and Unification. A Causal–Structural Account.Bert Leuridan - 2014 - British Journal for the Philosophy of Science 65 (4):717-771.
    What are scientific theories and how should they be represented? In this article, I propose a causal–structural account, according to which scientific theories are to be represented as sets of interrelated causal and credal nets. In contrast with other accounts of scientific theories (such as Sneedian structuralism, Kitcher’s unificationist view, and Darden’s theory of theoretical components), this leaves room for causality to play a substantial role. As a result, an interesting account of explanation is provided, which sheds light on explanatory (...)
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  • (1 other version)Alexander Gebharter: Causal Nets, Interventionism, and Mechanisms. Philosophical Foundations and Applications: Springer, Cham, 2017, 184 pp, $99.99, ISBN: 9783319499079. [REVIEW]Lorenzo Casini - 2018 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 49 (3):481-485.
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  • (1 other version)Alexander Gebharter: Causal Nets, Interventionism, and Mechanisms. Philosophical Foundations and Applications.Lorenzo Casini - 2018 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 49 (3):481-485.
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  • Identifying intervention variables.Michael Baumgartner & Isabelle Drouet - 2013 - European Journal for Philosophy of Science 3 (2):183-205.
    The essential precondition of implementing interventionist techniques of causal reasoning is that particular variables are identified as so-called intervention variables. While the pertinent literature standardly brackets the question how this can be accomplished in concrete contexts of causal discovery, the first part of this paper shows that the interventionist nature of variables cannot, in principle, be established based only on an interventionist notion of causation. The second part then demonstrates that standard observational methods that draw on Bayesian networks identify intervention (...)
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  • The power of intervention.Kevin B. Korb & Erik Nyberg - 2006 - Minds and Machines 16 (3):289-302.
    We further develop the mathematical theory of causal interventions, extending earlier results of Korb, Twardy, Handfield, & Oppy, (2005) and Spirtes, Glymour, Scheines (2000). Some of the skepticism surrounding causal discovery has concerned the fact that using only observational data can radically underdetermine the best explanatory causal model, with the true causal model appearing inferior to a simpler, faithful model (cf. Cartwright, (2001). Our results show that experimental data, together with some plausible assumptions, can reduce the space of viable explanatory (...)
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  • Review: Response to Glymour. [REVIEW]Jon Williamson - 2009 - British Journal for the Philosophy of Science 60 (4):857 - 860.
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  • Response to Glymour. [REVIEW]Jon Williamson - 2009 - British Journal for the Philosophy of Science 60 (4):857-860.
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  • Bayesian and frequentist models: legitimate choices for different purposes of clinical research.Zackary Berger - 2010 - Journal of Evaluation in Clinical Practice 16 (6):1045-1047.
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