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  1. Descriptive multiscale modeling in data-driven neuroscience.Philipp Haueis - 2022 - Synthese 200 (2):1-26.
    Multiscale modeling techniques have attracted increasing attention by philosophers of science, but the resulting discussions have almost exclusively focused on issues surrounding explanation (e.g., reduction and emergence). In this paper, I argue that besides explanation, multiscale techniques can serve important exploratory functions when scientists model systems whose organization at different scales is ill-understood. My account distinguishes explanatory and descriptive multiscale modeling based on which epistemic goal scientists aim to achieve when using multiscale techniques. In explanatory multiscale modeling, scientists use multiscale (...)
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  • Joint representation: Modeling a phenomenon with multiple biological systems.Yoshinari Yoshida - 2023 - Studies in History and Philosophy of Science Part A 99:67-76.
    Biologists often study particular biological systems as models of a phenomenon of interest even if they already know that the phenomenon is produced by diverse mechanisms and hence none of those systems alone can sufficiently represent it. To understand this modeling practice, the present paper provides an account of how multiple model systems can be used to study a phenomenon that is produced by diverse mechanisms. Even if generalizability of results from a single model system is significantly limited, generalizations concerning (...)
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  • Observation, Experiment, and Scientific Practice.Slobodan Perović - 2021 - International Studies in the Philosophy of Science 34 (1):1-20.
    Ian Hacking has argued that the notions of experiment and observation are distinct, not even the opposite ends of a continuum. More recently, other authors have emphasised their continuity, saying...
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  • What have we learned about the engram?Jonathan Najenson - 2021 - Synthese 199 (3-4):9581-9601.
    The discovery of the engram, the physical substrate of memory, is a central challenge for the sciences of memory. Following the application of optogenetics to the neurobiological study of memory, scientists and philosophers claim that the engram has been found. In this paper, I evaluate the implications of applying optogenetic tools to the localization of the engram. I argue that conceptions of engram localization need to be revised to be made consistent with optogenetic studies of the engram. I distinguish between (...)
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  • Mechanistic inquiry and scientific pursuit: The case of visual processing.Philipp Haueis & Lena Kästner - 2022 - Studies in History and Philosophy of Science Part A 93 (C):123-135.
    Why is it rational for scientists to pursue multiple models of a phenomenon at the same time? The literatures on mechanistic inquiry and scientific pursuit each develop answers to a version of this question which is rarely discussed by the other. The mechanistic literature suggests that scientists pursue different complementary models because each model provides detailed insights into different aspects of the phenomenon under investigation. The pursuit literature suggests that scientists pursue competing models because alternative models promise to solve outstanding (...)
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  • Cognitive ontology and the search for neural mechanisms: three foundational problems.Jolien C. Francken, Marc Slors & Carl F. Craver - 2022 - Synthese 200 (5):1-22.
    The central task of cognitive neuroscience to map cognitive capacities to neural mechanisms faces three interlocking conceptual problems that together frame the problem of cognitive ontology. First, they must establish which tasks elicit which cognitive capacities, and specifically when different tasks elicit the same capacity. To address this operationalization problem, scientists often assess whether the tasks engage the same neural mechanisms. But to determine whether mechanisms are of the same or different kinds, we need to solve the abstraction problem by (...)
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  • Explaining the apocalypse: the end-Permian mass extinction and the dynamics of explanation in geohistory.Max Dresow - 2021 - Synthese 199 (3-4):10441-10474.
    Explanation is a perennially hot topic in philosophy of science. Yet philosophers have exhibited a curious blind spot to the questions of how explanatory projects develop over time, as well as what processes are involved in generating their developmental trajectories. This paper examines these questions using research into the end-Permian mass extinction as a case study. It takes as its jumping-off point the observation that explanations of historical events tend to grow more complex over time, but it goes beyond this (...)
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  • What counts as a memory? Definitions, hypotheses, and 'kinding in progress'.David Colaço - 2022 - Philosophy of Science 89 (1):89-106.
    This paper accounts for broad definitions of memory, which extend to paradigmatic memory phenomena, like episodic memory in humans, and phenomena in worms and sea snails. These definitions may seem too broad, suggesting that they extend to phenomena that don’t count as memory or illustrate that memory is not a natural kind. However, these responses fail to consider a definition as a hypothesis. As opposed to construing definitions as expressing memory’s properties, a definition as a hypothesis is the basis to (...)
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  • Stuck in between. Phenomenology’s Explanatory Dilemma and its Role in Experimental Practice.Mark-Oliver Casper & Philipp Haueis - 2023 - Phenomenology and the Cognitive Sciences 22 (3):575-598.
    Questions about phenomenology’s role in non-philosophical disciplines gained renewed attention. While we claim that phenomenology makes indispensable, unique contributions to different domains of scientific practice such as concept formation, experimental design, and data collection, we also contend that when it comes to explanation, phenomenological approaches face a dilemma. Either phenomenological attempts to explain conscious phenomena do not satisfy a central constraint on explanations, i.e. the asymmetry between explanans and explanandum, or they satisfy this explanatory asymmetry only by largely merging with (...)
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  • The inchworm episode: Reconstituting the phenomenon of kinesin motility.Andrew Bollhagen - 2021 - European Journal for Philosophy of Science 11 (2):1-25.
    New Mechanist philosophical models of "phenomenon reconstitution" understand the process to be driven by explanatory considerations. Here I discuss an episode of phenomenon reconstitution that occurred entirely within an experimental program dedicated to characterizing the phenomenon of kinesin motility. Rather than being driven by explanatory considerations, as standard mechanist views maintain, I argue that the phenomenon of kinesin motility was reconstituted to enhance researchers’ primary experimental tool—the single molecule motility assay.
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  • Minding the gap: discovering the phenomenon of chemical transmission in the nervous system.William Bechtel - 2023 - History and Philosophy of the Life Sciences 45 (4):1-33.
    The neuron doctrine, according to which nerves consist of discontinuous neurons, presented investigators with the challenge of determining what activities occurred between them or between them and muscles. One group of researchers, dubbed the sparks, viewed the electrical current in one neuron as inducing a current in the next neuron or in muscles. For them there was no gap between the activities of neurons or neurons and muscles that required filling with a new type of activity. A competing group, the (...)
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  • Figuring out what is happening: the discovery of two electrophysiological phenomena.William Bechtel & Richard Vagnino - 2022 - History and Philosophy of the Life Sciences 44 (2):1-36.
    Research devoted to characterizing phenomena is underappreciated in philosophical accounts of scientific inquiry. This paper develops a diachronic analysis of research over 100 years that led to the recognition of two related electrophysiological phenomena, the membrane potential and the action potential. A diachronic perspective allows for reconciliation of two threads in philosophical discussions of phenomena—Hacking’s treatment of phenomena as manifest in laboratory settings and Bogen and Woodward’s construal of phenomena as regularities in the world. The diachronic analysis also reveals the (...)
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  • Classification, Kinds, Taxonomic Stability, and Conceptual Change.Jaipreet Mattu & Jacqueline Anne Sullivan - forthcoming - Aggression and Violent Behavior.
    Scientists represent their world, grouping and organizing phenomena into classes by means of concepts. Philosophers of science have historically been interested in the nature of these concepts, the criteria that inform their application and the nature of the kinds that the concepts individuate. They also have sought to understand whether and how different systems of classification are related and more recently, how investigative practices shape conceptual development and change. Our aim in this paper is to provide a critical overview of (...)
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