Traditional logical empiricist and more recent historicist positions on the logic of discovery are briefly reviewed and both are found wanting. None have examined the historical detail now available from recent research on Darwin, from which there is evidence for gradual transition in descriptive and explanatory concepts. This episode also shows that revolutionary research can be directed by borrowed metascientific objectives and heuristics from other disciplines. Darwin's own revolutionary research took place within an ontological context borrowed from non evolutionary predecessors (...) with methodological objectives borrowed from and justified by their success in Newton's physics. The logic of discovery is not a special form of inference from observation to theory, but rather a theory of the rationality of research, including principles bearing upon the rational choice of problems, or epistemic objectives, and heuristic, or means to solving the problems. Such choices can be justified only locally in the context of a relatively stable background ontology and substantive epistemology, not globally for all science. (shrink)