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  1. Humanising and dehumanising pigs in genomic and transplantation research.James W. E. Lowe - 2022 - History and Philosophy of the Life Sciences 44 (4):1-27.
    Biologists who work on the pig (_Sus scrofa_) take advantage of its similarity to humans by constructing the inferential and material means to traffic data, information and knowledge across the species barrier. Their research has been funded due to its perceived value for agriculture and medicine. Improving selective breeding practices, for instance, has been a driver of genomics research. The pig is also an animal model for biomedical research and practice, and is proposed as a source of organs for cross-species (...)
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  • The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project.Kathryn Maxson Jones, Rachel A. Ankeny & Robert Cook-Deegan - 2018 - Journal of the History of Biology 51 (4):693-805.
    The Bermuda Principles for DNA sequence data sharing are an enduring legacy of the Human Genome Project. They were adopted by the HGP at a strategy meeting in Bermuda in February of 1996 and implemented in formal policies by early 1998, mandating daily release of HGP-funded DNA sequences into the public domain. The idea of daily sharing, we argue, emanated directly from strategies for large, goal-directed molecular biology projects first tested within the “community” of C. elegans researchers, and were introduced (...)
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  • Speciation Post Synthesis: 1960–2000.Anya Plutynski - 2019 - Journal of the History of Biology 52 (4):569-596.
    Speciation—the origin of new species—has been one of the most active areas of research in evolutionary biology, both during, and since the Modern Synthesis. While the Modern Synthesis certainly shaped research on speciation in significant ways, providing a core framework, and set of categories and methods to work with, the history of work on speciation since the mid-twentieth century is a history of divergence and diversification. This piece traces this divergence, through both theoretical advances, and empirical insights into how different (...)
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  • (1 other version)Comment la procrastination est-elle possible? Procrastination, souci de soi et identité personnelle.Christine Tappolet - 2013 - Repha 7:13-43.
    As common experience confirms, procrastination seems not only possible, but widespread. However, procrastination should not be taken for granted. Often, the procrastinator harms herself knowingly. It thus clearly seems that such a person lacks the self-concern that usually characterises us. After having spelled out what procrastination is, and having explored its main varieties, I consider the relation between procrastination and risk-taking. After this, I discuss the implications of this phenomenon for the debates about personal identity. The upshot, I argue, is (...)
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  • Modernizing Natural History: Berkeley’s Museum of Vertebrate Zoology in Transition. [REVIEW]Mary E. Sunderland - 2013 - Journal of the History of Biology 46 (3):369-400.
    Throughout the twentieth century calls to modernize natural history motivated a range of responses. It was unclear how research in natural history museums would participate in the significant technological and conceptual changes that were occurring in the life sciences. By the 1960s, the Museum of Vertebrate Zoology at the University of California, Berkeley, was among the few university-based natural history museums that were able to maintain their specimen collections and support active research. The MVZ therefore provides a window to the (...)
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  • Three perspectives on neutrality and drift in molecular evolution.Michael R. Dietrich - 2006 - Philosophy of Science 73 (5):666-677.
    This article offers three contrasting cases of the use of neutrality and drift in molecular evolution. In the first, neutrality is assumed as a simplest case for modeling. In the second and third, concepts of drift and neutrality are developed within the context of population genetics testing and the development and application of the molecular clock.
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  • Manipulating underdetermination in scientific controversy: The case of the molecular clock.Michael R. Dietrich & Robert A. Skipper - 2007 - Perspectives on Science 15 (3):295-326.
    : Where there are cases of underdetermination in scientific controversies, such as the case of the molecular clock, scientists may direct the course and terms of dispute by playing off the multidimensional framework of theory evaluation. This is because assessment strategies themselves are underdetermined. Within the framework of assessment, there are a variety of trade-offs between different strategies as well as shifting emphases as specific strategies are given more or less weight in assessment situations. When a strategy is underdetermined, scientists (...)
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  • Proximate and ultimate causes: how come? and what for? [REVIEW]David Haig - 2013 - Biology and Philosophy 28 (5):781-786.
    Proximate and ultimate causes in evolutionary biology have come to conflate two distinctions. The first is a distinction between immediate and historical causes. The second is between explanations of mechanism and adaptive function. Mayr emphasized the first distinction but many evolutionary biologists use proximate and ultimate causes to refer to the second. I recommend that ‘ultimate cause’ be abandoned as ambiguous.
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  • Causal mechanisms of evolution and the capacity for niche construction.Ward B. Watt - 2013 - Biology and Philosophy 28 (5):757-766.
    Ernst Mayr proposed a distinction between “proximate”, mechanistic, and “ultimate”, evolutionary, causes of biological phenomena. This dichotomy has influenced the thinking of many biologists, but it is increasingly perceived as impeding modern studies of evolutionary processes, including study of “niche construction” in which organisms alter their environments in ways supportive of their evolutionary success. Some still find value for this dichotomy in its separation of answers to “how?” versus “why?”questions about evolution. But “why is A?” questions about evolution necessarily take (...)
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  • (1 other version)Confirmation and explaining how possible.Patrick Forber - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (1):32-40.
    Confirmation in evolutionary biology depends on what biologists take to be the genuine rivals. Investigating what constrains the scope of biological possibility provides part of the story: explaining how possible helps determine what counts as a genuine rival and thus informs confirmation. To clarify the criteria for genuine rivalry I distinguish between global and local constraints on biological possibility, and offer an account of how-possibly explanation. To sharpen the connection between confirmation and explaining how possible I discuss the view that (...)
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  • Beyond Darwinism’s Eclipse: Functional Evolution, Biochemical Recapitulation and Spencerian Emergence in the 1920s and 1930s.Rony Armon - 2010 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 41 (1):173-194.
    During the 1920s and 1930s, many biologists questioned the viability of Darwin’s theory as a mechanism of evolutionary change. In the early 1940s, and only after a number of alternatives were suggested, Darwinists succeeded to establish natural selection and gene mutation as the main evolutionary mechanisms. While that move, today known as the neo-Darwinian synthesis, is taken as signalling a triumph of evolutionary theory, certain critical problems in evolution—in particular the evolution of animal function—could not be addressed with this approach. (...)
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  • Neo‐functional Analysis: Phylogenetical Restrictions on Causal Role Functions.Predrag Šustar - 2007 - Philosophy of Science 74 (5):601-615.
    The most recent resurgence of philosophical attention to the so-called ‘functional talk' in the sciences can be summarized in terms of the following questions: (Q1) What kind of restrictions, and in particular, what kind of evolutionary restrictions as well as to what extent, is involved in functional ascriptions? (Q2) How can we account for the explanatory import of function-ascribing statements? This paper addresses these questions through a modified version of Cummins' functional analysis. The modification in question is concerned with phylogenetical (...)
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  • Collecting, Comparing, and Computing Sequences: The Making of Margaret O. Dayhoff’s Atlas of Protein Sequence and Structure, 1954–1965.Bruno J. Strasser - 2010 - Journal of the History of Biology 43 (4):623-660.
    Collecting, comparing, and computing molecular sequences are among the most prevalent practices in contemporary biological research. They represent a specific way of producing knowledge. This paper explores the historical development of these practices, focusing on the work of Margaret O. Dayhoff, Richard V. Eck, and Robert S. Ledley, who produced the first computer-based collection of protein sequences, published in book format in 1965 as the Atlas of Protein Sequence and Structure. While these practices are generally associated with the rise of (...)
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  • (2 other versions)Ernst Mayr, the tree of life, and philosophy of biology.Maureen A. O’Malley - 2010 - Biology and Philosophy 25 (4):529-552.
    Ernst Mayr’s influence on philosophy of biology has given the field a particular perspective on evolution, phylogeny and life in general. Using debates about the tree of life as a guide, I show how Mayrian evolutionary biology excludes numerous forms of life and many important evolutionary processes. Hybridization and lateral gene transfer are two of these processes, and they occur frequently, with important outcomes in all domains of life. Eukaryotes appear to have a more tree-like history because successful lateral events (...)
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  • Representing the Object of Controversy: The Case of the Molecular Clock.Michael R. Dietrich - 2007 - History and Philosophy of the Life Sciences 29 (2):161 - 176.
    Through a case study of the controversies surrounding the molecular clock, this paper examines the role of visual representation in the dynamics of scientific controversies. Representations of the molecular clock themselves became objects of controversy and so were not a means for closure. Instead visual representations of the molecular clock became tools for the further articulation of an ongoing controversy.
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  • The Experimental Study of Bacterial Evolution and Its Implications for the Modern Synthesis of Evolutionary Biology.Maureen A. O’Malley - 2018 - Journal of the History of Biology 51 (2):319-354.
    Since the 1940s, microbiologists, biochemists and population geneticists have experimented with the genetic mechanisms of microorganisms in order to investigate evolutionary processes. These evolutionary studies of bacteria and other microorganisms gained some recognition from the standard-bearers of the modern synthesis of evolutionary biology, especially Theodosius Dobzhansky and Ledyard Stebbins. A further period of post-synthesis bacterial evolutionary research occurred between the 1950s and 1980s. These experimental analyses focused on the evolution of population and genetic structure, the adaptive gain of new functions, (...)
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  • History, objectivity, and the construction of molecular phylogenies.Edna Suárez-Díaz & Victor H. Anaya-Muñoz - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):451-468.
    Despite the promises made by molecular evolutionists since the early 1960s that phylogenies would be readily reconstructed using molecular data, the construction of molecular phylogenies has both retained many methodological problems of the past and brought up new ones of considerable epistemic relevance. The field is driven not only by changes in knowledge about the processes of molecular evolution, but also by an ever-present methodological anxiety manifested in the constant search for an increased objectivity—or in its converse, the avoidance of (...)
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  • The Long and Winding Road of Molecular Data in Phylogenetic Analysis.Edna Suárez-Díaz - 2014 - Journal of the History of Biology 47 (3):443-478.
    The use of molecules and reactions as evidence, markers and/or traits for evolutionary processes has a history more than a century long. Molecules have been used in studies of intra-specific variation and studies of similarity among species that do not necessarily result in the analysis of phylogenetic relations. Promoters of the use of molecular data have sustained the need for quantification as the main argument to make use of them. Moreover, quantification has allowed intensive statistical analysis, as a condition and (...)
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  • Waiting for Sequences: Morris Goodman, Immunodiffusion Experiments, and the Origins of Molecular Anthropology. [REVIEW]Joel B. Hagen - 2010 - Journal of the History of Biology 43 (4):697 - 725.
    During the early 1960s, Morris Goodman used a variety of immunological tests to demonstrate the very close genetic relationships among humans, chimpanzees, and gorillas. Molecular anthropologists often point to this early research as a critical step in establishing their new specialty. Based on his molecular results, Goodman challenged the widely accepted taxonomie classification that separated humans from chimpanzees and gorillas in two separate families. His claim that chimpanzees and gorillas should join humans in family Hominidae sparked a well-known conflict with (...)
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  • Causes ultimes et causes prochaines.Martin Flament-Fultot - 2013 - RÉPHA, revue étudiante de philosophie analytique 7:61-76.
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  • A hapless mathematical contribution to biology: Chromosome inversions in Drosophila, 1937–1941.Eric Tannier - 2022 - History and Philosophy of the Life Sciences 44 (3):1-22.
    This is the story, told in the light of a new analysis of historical data, of a mathematical biology problem that was explored in the 1930s in Thomas Morgan’s laboratory at the California Institute of Technology. It is one of the early developments of evolutionary genetics and quantitative phylogeny, and deals with the identification and counting of chromosomal inversions in Drosophila species from comparisons of genetic maps. A re-analysis of the data produced in the 1930s using current mathematics and computational (...)
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  • Environmental Ethics.Roberta L. Millstein - 2013 - In Kostas Kampourakis (ed.), The Philosophy of Biology: a Companion for Educators. Dordrecht: Springer.
    A number of areas of biology raise questions about what is of value in the natural environment and how we ought to behave towards it: conservation biology, environmental science, and ecology, to name a few. Based on my experience teaching students from these and similar majors, I argue that the field of environmental ethics has much to teach these students. They come to me with pent-up questions and a feeling that more is needed to fully engage in their subjects, and (...)
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  • Framing the Epistemic Schism of Statistical Mechanics.Javier Anta - 2021 - Proceedings of the X Conference of the Spanish Society of Logic, Methodology and Philosophy of Science.
    In this talk I present the main results from Anta (2021), namely, that the theoretical division between Boltzmannian and Gibbsian statistical mechanics should be understood as a separation in the epistemic capabilities of this physical discipline. In particular, while from the Boltzmannian framework one can generate powerful explanations of thermal processes by appealing to their microdynamics, from the Gibbsian framework one can predict observable values in a computationally effective way. Finally, I argue that this statistical mechanical schism contradicts the Hempelian (...)
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  • That 70s show: regulation, evolution and development beyond molecular genetics.Edna Suárez-Díaz & Vivette García-Deister - 2015 - History and Philosophy of the Life Sciences 36 (4):503-524.
    This paper argues that the “long 1970s” (1969–1983) is an important though often overlooked period in the development of a rich landscape in the research of metabolism, development, and evolution. The period is marked by: shrinking public funding of basic science, shifting research agendas in molecular biology, the incorporation of new phenomena and experimental tools from previous biological research at the molecular level, and the development of recombinant DNA techniques. Research was reoriented towards eukaryotic cells and development, and in particular (...)
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  • J. B. S. Haldane, Ernst Mayr and the Beanbag Genetics Dispute.Veena Rao & Vidyanand Nanjundiah - 2011 - Journal of the History of Biology 44 (2):233 - 281.
    Starting from the early decades of the twentieth century, evolutionary biology began to acquire mathematical overtones. This took place via the development of a set of models in which the Darwinian picture of evolution was shown to be consistent with the laws of heredity discovered by Mendel. The models, which came to be elaborated over the years, define a field of study known as population genetics. Population genetics is generally looked upon as an essential component of modern evolutionary theory. This (...)
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  • Evo-Devo as a Trading Zone.Rasmus Grønfeldt Winther - 2014 - In Alan C. Love (ed.), Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development. Berlin: Springer Verlag, Boston Studies in the Philosophy of Science.
    Evo-Devo exhibits a plurality of scientific “cultures” of practice and theory. When are the cultures acting—individually or collectively—in ways that actually move research forward, empirically, theoretically, and ethically? When do they become imperialistic, in the sense of excluding and subordinating other cultures? This chapter identifies six cultures – three /styles/ (mathematical modeling, mechanism, and history) and three /paradigms/ (adaptationism, structuralism, and cladism). The key assumptions standing behind, under, or within each of these cultures are explored. Characterizing the internal structure of (...)
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  • Synthesis and Selection: Wynne-Edwards' Challenge to David Lack.Mark E. Borrello - 2003 - Journal of the History of Biology 36 (3):531-566.
    David Lack of Oxford University and V. C. Wynne- Edwards of Aberdeen University were renowned ornithologists with contrasting views of the modern synthesis which deeply influenced their interpretation and explanation of bird behavior. In the 1950's and 60's Lack became the chief advocate of neo-Darwinism with respect to avian ecology, while Wynne- Edwards developed his theory of group selection. Lack 's position was consistent with the developing focus on individual level adaptation, which was a core concept of the modern synthesis. (...)
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  • Molecular evolution: concepts and the origin of disciplines.Edna Suárez-Díaz - 2009 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 40 (1):43-53.
    This paper focuses on the consolidation of Molecular Evolution, a field originating in the 1960s at the interface of molecular biology, biochemistry, evolutionary biology, biophysics and studies on the origin of life and exobiology. The claim is made that Molecular Evolution became a discipline by integrating different sorts of scientific traditions: experimental, theoretical and comparative. The author critically incorporates Timothy Lenoir’s treatment of disciplines , as well as ideas developed by Stephen Toulmin on the same subject. On their account disciplines (...)
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  • History in the Gene: Negotiations Between Molecular and Organismal Anthropology.Marianne Sommer - 2008 - Journal of the History of Biology 41 (3):473-528.
    In the advertising discourse of human genetic database projects, of genetic ancestry tracing companies, and in popular books on anthropological genetics, what I refer to as the anthropological gene and genome appear as documents of human history, by far surpassing the written record and oral history in scope and accuracy as archives of our past. How did macromolecules become "documents of human evolutionary history"? Historically, molecular anthropology, a term introduced by Emile Zuckerkandl in 1962 to characterize the study of primate (...)
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  • Reinventing Richard Goldschmidt: Reputation, Memory, and Biography.Michael R. Dietrich - 2011 - Journal of the History of Biology 44 (4):693 - 712.
    Richard Goldschmidt was one of the most controversial biologists of the mid-twentieth century. Rather than fade from view, Goldschmidt's work and reputation has persisted in the biological community long after he has. Goldschmidt's longevity is due in large part to how he was represented by Stephen J. Gould. When viewed from the perspective of the biographer, Gould's revival of Goldschmidt as an evolutionary heretic in the 1970s and 1980s represents a selective reinvention of Goldschmidt that provides a contrast to other (...)
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  • Special Issue Editor’s Introduction: “Revisiting the Modern Synthesis”.Philippe Huneman - 2019 - Journal of the History of Biology 52 (4):509-518.
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  • The structure of microbial evolutionary theory.J. Sapp - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):780-795.
    The study of microbial phylogeny and evolution has emerged as an interdisciplinary synthesis, divergent in both methods and concepts from the classical evolutionary biology. The deployment of macromolecular sequencing in microbial classification has provided a deep evolutionary taxonomy hitherto deemed impossible. Microbial phylogenetics has greatly transformed the landscape of evolutionary biology, not only in revitalizing the field in the pursuit of life’s history over billions of years, but also in transcending the structure of thought that has shaped evolutionary theory since (...)
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  • Camels, Cormorants, and Kangaroo Rats: Integration and Synthesis in Organismal Biology After World War II.Joel B. Hagen - 2015 - Journal of the History of Biology 48 (2):169-199.
    During the decades following World War II diverse groups of American biologists established a variety of distinctive approaches to organismal biology. Rhetorically, organismal biology could be used defensively to distinguish established research traditions from perceived threats from newly emerging fields such as molecular biology. But, organismal biologists were also interested in integrating biological disciplines and using a focus on organisms to synthesize levels of organization from molecules and cells to populations and communities. Part of this broad movement was the development (...)
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  • 1The introduction of computers into systematic research in the United States during the 1960s.Joel B. Hagen - 2001 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 32 (2):291-314.
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  • The Molecular Basis of Evolution and Disease: A Cold War Alliance.Edna Suárez-Díaz - 2019 - Journal of the History of Biology 52 (2):325-346.
    This paper extends previous arguments against the assumption that the study of variation at the molecular level was instigated with a view to solving an internal conflict between the balance and classical schools of population genetics. It does so by focusing on the intersection of basic research in protein chemistry and the molecular approach to disease with the enactment of global health campaigns during the Cold War period. The paper connects advances in research on protein structure and function as reflected (...)
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  • Gene.Hans-Jörg Rheinberger - 2008 - Stanford Encyclopedia of Philosophy.
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  • Blood Diseases in the Backyard: Mexican "indígenas" as a Population of Cognition in the Mid-1960s.Edna Suárez-Díaz - 2017 - Perspectives on Science 25 (5):606-630.
    Between December 14 and 20, 1965, the World Health Organization Scientific Group on Haemoglobinopathies and Allied Disorders metatthe Geneva agency's headquarters. The group comprised eight well-known physicians including Tulio Arends, a leading Latin American human geneticist from the Venezuelan Institute for Scientific Investigations. Others came from North America, Northern and Southern Europe, the Middle East and South East Asia, an array that reflected the delicate geopolitical equilibriums of postwar international health programs, but also the development of highly specialized biomedical research (...)
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  • Conceptual change and evolutionary developmental biology.A. C. Love - 2014 - In Alan C. Love (ed.), Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development. Berlin: Springer Verlag, Boston Studies in the Philosophy of Science. pp. 1-54.
    The 1981 Dahlem conference was a catalyst for contemporary evolutionary developmental biology (Evo-devo). This introductory chapter rehearses some of the details of the history surrounding the original conference and its associated edited volume, explicates the philosophical problem of conceptual change that provided the rationale for a workshop devoted to evaluating the epistemic revisions and transformations that occurred in the interim, explores conceptual change with respect to the concept of evolutionary novelty, and highlights some of the themes and patterns in the (...)
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  • Coding sequences: A history of sequence comparison algorithms as a scientific instrument.Hallam Stevens - 2011 - Perspectives on Science 19 (3):263-299.
    Historians of molecular biology have paid significant attention to the role of scientific instruments and their relationship to the production of biological knowledge. For instance, Lily Kay has examined the history of electrophoresis, Boelie Elzen has analyzed the development of the ultracentrifuge as an enabling technology for molecular biology, and Nicolas Rasmussen has examined how molecular biology was transformed by the introduction of the electron microscope (Kay 1998, 1993; Elzen 1986; Rasmussen 1997). 1 Collectively, these historians have demonstrated how instruments (...)
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  • The Development of Sociobiology in Relation to Animal Behavior Studies, 1946–1975.Clement Levallois - 2018 - Journal of the History of Biology 51 (3):419-444.
    This paper aims at bridging a gap between the history of American animal behavior studies and the history of sociobiology. In the post-war period, ecology, comparative psychology and ethology were all investigating animal societies, using different approaches ranging from fieldwork to laboratory studies. We argue that this disunity in “practices of place” explains the attempts of dialogue between those three fields and early calls for unity through “sociobiology” by J. Paul Scott. In turn, tensions between the naturalist tradition and the (...)
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  • Bergmann’s Rule, Adaptation, and Thermoregulation in Arctic Animals: Conflicting Perspectives from Physiology, Evolutionary Biology, and Physical Anthropology After World War II.Joel B. Hagen - 2017 - Journal of the History of Biology 50 (2):235-265.
    Bergmann’s rule and Allen’s rule played important roles in mid-twentieth century discussions of adaptation, variation, and geographical distribution. Although inherited from the nineteenth-century natural history tradition these rules gained significance during the consolidation of the modern synthesis as evolutionary theorists focused attention on populations as units of evolution. For systematists, the rules provided a compelling rationale for identifying geographical races or subspecies, a function that was also picked up by some physical anthropologists. More generally, the rules provided strong evidence for (...)
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  • Animal Behavior, Population Biology and the Modern Synthesis.Jean-Baptiste Grodwohl - 2019 - Journal of the History of Biology 52 (4):597-633.
    This paper examines the history of animal behavior studies after the synthesis period. Three episodes are considered: the adoption of the theory of natural selection, the mathematization of ideas, and the spread of molecular methods in behavior studies. In these three episodes, students of behavior adopted practices and standards developed in population ecology and population genetics. While they borrowed tools and methods from these fields, they made distinct uses that set them relatively apart and led them to contribute, in their (...)
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  • ‘Darwin was Wrong.’ The International Media Coverage of theOreopithecus' Reinterpretation.Clara Florensa - 2016 - Centaurus 58 (3):219-238.
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  • (1 other version)Causalidad Psicobiológica y Pluralismo.Carlos Javier Blanco - 2012 - Cinta de Moebio 45:275-293.
    En este trabajo presento distintos enfoques sobre la causalidad psicológica normalmente desatendidos. El debate entre mecanicismo y dualismo en la psicología ha oscurecido otras posiciones filosóficas pluralistas. Comienzo por exponer la postura "analógica" de Schopenhauer, que incluye -de forma plu..
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