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Biological information

In Peter Adamson (ed.), Stanford Encyclopedia of Philosophy. Stanford Encyclopedia of Philosophy (2012)

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  1. From Engel to Enactivism: Contextualizing the Biopsychosocial Model.Awais Aftab & Kristopher Nielsen - 2021 - European Journal of Analytic Philosophy 17 (2):(M2)5-22.
    In this article we offer a two-part commentary on Bolton and Gillett’s reconceptualization of Engel’s biopsychosocial model. In the first section we present a conceptual and historical assessment of the biopsychosocial model that differs from the analysis by Bolton and Gillett. Specifically, we point out that Engel in his vision of the biopsychosocial model was less concerned with the ontological possibility and nature of psychosocial causes, and more concerned with psychosocial influences in the form of illness interpretation and presentation, sick (...)
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  • Philosophy, Drama and Literature.Rick Benitez - 2011 - In Graham Robert Oppy, Nick Trakakis, Lynda Burns, Steven Gardner & Fiona Leigh (eds.), A companion to philosophy in Australia & New Zealand. Clayton, Victoria, Australia: Monash University Publishing. pp. 371-372.
    Philosophy and Literature is an internationally renowned refereed journal founded by Denis Dutton at the University of Canterbury, Christchurch. It is now published by the Johns Hopkins University Press. Since its inception in 1976, Philosophy and Literature has been concerned with the relation between literary and philosophical studies, publishing articles on the philosophical interpretation of literature as well as the literary treatment of philosophy. Philosophy and Literature has sometimes been regarded as iconoclastic, in the sense that it repudiates academic pretensions, (...)
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  • Can reference be naturalized? -Notes toward an integrational(誠) causality.Daihyun Chung - 2016 - Philosophy Study 6 (5):289-304.
    As physicalisms of various kinds have faced difficulties in recent years, the time has come to explore possible alternatives, one of which is yinyang ontology. A yinyang theorist is expected to provide a plausible account of causation to replace the traditional notion of causation. The present paper is critical of the Humean tradition, which understands the relata of causal relations in terms of passive materiality so that humans use referential terms to describe causal relations constructively. But an alternative notion of (...)
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  • The Content and Implications of Nativist Claims. A Philosophical Analysis.Riin Kõiv - 2021 - Dissertation, University of Tartu
    We often hear how scientists have discovered that a certain human trait – or a trait of another type of organism – is innate, genetic, heritable, inherited, naturally selected etc. All these claims have something in common: they all declare a trait to have significant organism internal (for instance genetic) causes that are present in the organism at its birth. I call claims like these “nativist claims”. Nativist claims are important. They shape our overall understanding of what we are, what (...)
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  • Abduction: Can Non-human Animals Make Discoveries?Mariana Vitti-Rodrigues & Claus Emmeche - 2017 - Biosemiotics 10 (2):295-313.
    The aim of this paper is to investigate the relationship between information and abductive reasoning in the context of problem-solving, focusing on non-human animals. Two questions guide our investigation: What is the relation between information and abductive reasoning in the context of human and non-human animals? Do non-human animals perform discovery based on inferential processes such as abductive reasoning? In order to answer these questions, we discuss the semiotic concept of information in relation to the concept of abductive reasoning and, (...)
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  • What Kind of Information is Brain Information?Charles Rathkopf - 2020 - Topoi 39 (1):95-102.
    Neural systems process information. This platitude contains an interesting ambiguity between multiple senses of the term “information.” According to a popular thought, the ambiguity is best resolved by reserving semantic concepts of information for the explication of neural activity at a high level of organization, and quantitative concepts of information for the explication of neural activity at a low level of organization. This article articulates the justification behind this view, and concludes that it is an oversimplification. An analysis of the (...)
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  • Neural information and the problem of objectivity.Charles Rathkopf - 2017 - Biology and Philosophy 32 (3):321-336.
    A fascinating research program in neurophysiology attempts to quantify the amount of information transmitted by single neurons. The claims that emerge from this research raise new philosophical questions about the nature of information. What kind of information is being quantified? Do the resulting quantities describe empirical magnitudes like those found elsewhere in the natural sciences? In this article, it is argued that neural information quantities have a relativisitic character that makes them distinct from the kinds of information typically discussed in (...)
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  • Spór o ciągłość życia i umysłu. Argumenty na rzecz kognitywizmu.Michał Piekarski - 2021 - Argument: Biannual Philosophical Journal 11 (1).
    The dispute over the continuity of life and mind. Arguments for cognitivism: The purpose of this paper is to discuss the position of non-cognitivism on the issue of the so-called dispute over the continuity / discontinuity of life and mind. In discussing the views of Michael Kirchhoff and Tom Froese, I will point out some difficulties related to their position. Next, I will formulate three arguments in favor of the cognitive alternative, emphasizing the need to resort to semantic information in (...)
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  • Causation and Information: Where Is Biological Meaning to Be Found?Mark Pharoah - 2020 - Biosemiotics 13 (3):309-326.
    The term ‘information’ is used extensively in biology, cognitive science and the philosophy of consciousness in relation to the concepts of ‘meaning’ and ‘causation’. While ‘information’ is a term that serves a useful purpose in specific disciplines, there is much to the concept that is problematic. Part 1 is a critique of the stance that information is an independently existing entity. On this view, and in biological contexts, systems transmit, acquire, assimilate, decode and manipulate it, and in so doing, generate (...)
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  • Conflations in the Causal Account of Information Undermine the Parity Thesis.Barton Moffatt - 2011 - Philosophy of Science 78 (2):284-302.
    The received view in philosophy of biology is that there is a well-understood, philosophically rigorous account of information—causal information. I argue that this view is mistaken. Causal information is fatally undermined by misinterpretations and conflations between distinct independent accounts of information. As a result, philosophical arguments based on causal information are deeply flawed. I end by briefly considering what a correct application of the relevant accounts of information would look like in the biological context.
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  • The relevance of communication theory for theories of representation.Stephen Francis Mann - 2023 - Philosophy and the Mind Sciences 4.
    Prominent views about representation share a premise: that mathematical communication theory is blind to representational content. Here I challenge that premise by rejecting two common misconceptions: that Claude Shannon said that the meanings of signals are irrelevant for communication theory (he didn't and they aren't), and that since correlational measures can't distinguish representations from natural signs, communication theory can't distinguish them either (the premise is true but the conclusion is false; no valid argument can link them).
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  • Consequences of a Functional Account of Information.Stephen Francis Mann - 2020 - Review of Philosophy and Psychology 11 (3):1-19.
    This paper aims to establish several interconnected points. First, a particular interpretation of the mathematical definition of information, known as the causal interpretation, is supported largely by misunderstandings of the engineering context from which it was taken. A better interpretation, which makes the definition and quantification of information relative to the function of its user, is outlined. The first half of the paper is given over to introducing communication theory and its competing interpretations. The second half explores three consequences of (...)
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  • Attribution of Information in Animal Interaction.Stephen Francis Mann - 2018 - Biological Theory 13 (3):164–179.
    This article establishes grounds on which attributions of information and encoding in animal signals are warranted. As common interest increases between evolutionary agents, the theoretical approach best suited to describing their interaction shifts from evolutionary game theory to communication theory, which warrants informational language. The take-home positive message is that in cooperative settings, signals can appropriately be described as transmitting encoded information, regardless of the cognitive powers of signalers. The canonical example is the honeybee waggle dance, which is discussed extensively (...)
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  • Getting the most out of Shannon information.Oliver M. Lean - 2014 - Biology and Philosophy 29 (3):395-413.
    Shannon information is commonly assumed to be the wrong way in which to conceive of information in most biological contexts. Since the theory deals only in correlations between systems, the argument goes, it can apply to any and all causal interactions that affect a biological outcome. Since informational language is generally confined to only certain kinds of biological process, such as gene expression and hormone signalling, Shannon information is thought to be unable to account for this restriction. It is often (...)
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  • Enactivism and predictive processing: A non-representational view.Michael David Kirchhoff & Ian Robertson - 2018 - Philosophical Explorations 21 (2):264-281.
    This paper starts by considering an argument for thinking that predictive processing (PP) is representational. This argument suggests that the Kullback–Leibler (KL)-divergence provides an accessible measure of misrepresentation, and therefore, a measure of representational content in hierarchical Bayesian inference. The paper then argues that while the KL-divergence is a measure of information, it does not establish a sufficient measure of representational content. We argue that this follows from the fact that the KL-divergence is a measure of relative entropy, which can (...)
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  • Hacking the brain: brain–computer interfacing technology and the ethics of neurosecurity.Marcello Ienca & Pim Haselager - 2016 - Ethics and Information Technology 18 (2):117-129.
    Brain–computer interfacing technologies are used as assistive technologies for patients as well as healthy subjects to control devices solely by brain activity. Yet the risks associated with the misuse of these technologies remain largely unexplored. Recent findings have shown that BCIs are potentially vulnerable to cybercriminality. This opens the prospect of “neurocrime”: extending the range of computer-crime to neural devices. This paper explores a type of neurocrime that we call brain-hacking as it aims at the illicit access to and manipulation (...)
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  • Sender-Receiver Systems within and between Organisms.Peter Godfrey-Smith - 2014 - Philosophy of Science 81 (5):866-878.
    Drawing on models of communication due to Lewis and Skyrms, I contrast sender-receiver systems as they appear within and between organisms, and as they function in the bridging of space and time. Within the organism, memory can be seen as the sending of messages over time, communication between stages as opposed to spatial parts. Psychological memory and genetic memory are compared with respect to their relations to a sender-receiver model. Some puzzles about “genetic information” can be resolved by seeing the (...)
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  • The long reach of philosophy of biology: Michael Ruse: The Oxford handbook of philosophy of biology. Oxford University Press, 2008.Matt Gers - 2011 - Biology and Philosophy 26 (3):439-447.
    The Oxford Handbook of Philosophy of Biology covers a broad range of topics in this field. It is not just a textbook focusing on evolutionary theory but encompasses ethics, social science and behaviour too. This essay outlines the scope of the work, discusses some points on methodology in the philosophy of biology, and then moves on to a more detailed analysis of cultural evolution and the applicability of a philosophy of biology toolkit to the social sciences. It is noted that (...)
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  • The instructional information processing account of digital computation.Nir Fresco & Marty J. Wolf - 2014 - Synthese 191 (7):1469-1492.
    What is nontrivial digital computation? It is the processing of discrete data through discrete state transitions in accordance with finite instructional information. The motivation for our account is that many previous attempts to answer this question are inadequate, and also that this account accords with the common intuition that digital computation is a type of information processing. We use the notion of reachability in a graph to defend this characterization in memory-based systems and underscore the importance of instructional information for (...)
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  • Educating the design stance: Issues of coherence and transgression.Norman H. Freeman & Melissa L. Allen - 2013 - Behavioral and Brain Sciences 36 (2):141 - 142.
    Bullot & Reber (B&R) put forth a design stance to fuse psychological and art historical accounts of visual thinking into a single theory. We argue that this aspect of their proposal needs further fine-tuning. Issues of transgression and coherence are necessary to provide stability to the design stance. We advocate looking to Art Education for such fundamentals of picture understanding.
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  • The artful mind meets art history: Toward a psycho-historical framework for the science of art appreciation.Nicolas J. Bullot & Rolf Reber - 2013 - Behavioral and Brain Sciences 36 (2):123-137.
    Research seeking a scientific foundation for the theory of art appreciation has raised controversies at the intersection of the social and cognitive sciences. Though equally relevant to a scientific inquiry into art appreciation, psychological and historical approaches to art developed independently and lack a common core of theoretical principles. Historicists argue that psychological and brain sciences ignore the fact that artworks are artifacts produced and appreciated in the context of unique historical situations and artistic intentions. After revealing flaws in the (...)
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  • Regulation and the Normativity Problem.Derek Bolton & Predrag Šustar - 2022 - International Studies in the Philosophy of Science 35 (2):135-151.
    The concept of regulation pervades biology, for example in models of genetic regulatory networks and the endocrine system. Regulation has a normative opposite, dysregulation, which figures prominently in biomedical models of disease. The use of normative concepts in biology, however, has been thought to present some challenges for the physicalist view of the world, and various resolutions have been proposed. Up to now the problem of biological normativity has been debated largely in connection with the concept of biological information. In (...)
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  • The transmission sense of information.Carl T. Bergstrom & Martin Rosvall - 2011 - Biology and Philosophy 26 (2):159-176.
    Biologists rely heavily on the language of information, coding, and transmission that is commonplace in the field of information theory developed by Claude Shannon, but there is open debate about whether such language is anything more than facile metaphor. Philosophers of biology have argued that when biologists talk about information in genes and in evolution, they are not talking about the sort of information that Shannon’s theory addresses. First, philosophers have suggested that Shannon’s theory is only useful for developing a (...)
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  • Valsa para carrapatos.Lorenzo Baravalle - 2014 - Scientiae Studia 12 (2):379-388.
    Este artigo trata da possibilidade de renovar o entendimento da eugenia no mundo contemporâneo. A biologia e a genética são fontes científicas da eugenia, mas não fazem parte de seu núcleo filosófico. Essa é a razão pela qual vemos a ontologia subjacente à eugenia como nossa principal preocupação. O estatuto da eugenia como uma prática está mudando rapidamente e a vida é tanto o objeto como a dimensão oculta dessa mudança. Entendida por meio da história dos seres, a dispersão da (...)
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  • Deception: a functional account.Marc Artiga & Cédric Paternotte - 2018 - Philosophical Studies 175 (3):579-600.
    Deception has recently received a significant amount of attention. One of main reasons is that it lies at the intersection of various areas of research, such as the evolution of cooperation, animal communication, ethics or epistemology. This essay focuses on the biological approach to deception and argues that standard definitions put forward by most biologists and philosophers are inadequate. We provide a functional account of deception which solves the problems of extant accounts in virtue of two characteristics: deceptive states have (...)
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  • Objects and processes: two notions for understanding biological information.Agustín Mercado-Reyes, Pablo Padilla Longoria & Alfonso Arroyo-Santos - forthcoming - Journal of Theoretical Biology.
    In spite of being ubiquitous in life sciences, the concept of information is harshly criticized. Uses of the concept other than those derived from Shannon's theory are denounced as pernicious metaphors. We perform a computational experiment to explore whether Shannon's information is adequate to describe the uses of said concept in commonplace scientific practice. Our results show that semantic sequences do not have unique complexity values different from the value of meaningless sequences. This result suggests that quantitative theoretical frameworks do (...)
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  • Idealist Origins: 1920s and Before.Martin Davies & Stein Helgeby - 2014 - In Graham Oppy & Nick Trakakis (eds.), History of Philosophy in Australia and New Zealand. Dordrecht, Netherlands: Springer. pp. 15-54.
    This paper explores early Australasian philosophy in some detail. Two approaches have dominated Western philosophy in Australia: idealism and materialism. Idealism was prevalent between the 1880s and the 1930s, but dissipated thereafter. Idealism in Australia often reflected Kantian themes, but it also reflected the revival of interest in Hegel through the work of ‘absolute idealists’ such as T. H. Green, F. H. Bradley, and Henry Jones. A number of the early New Zealand philosophers were also educated in the idealist tradition (...)
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  • Philosophy of Molecular Biology.Ingo Brigandt - 2018 - eLS: Encyclopedia of Life Sciences.
    Ongoing empirical discoveries in molecular biology have generated novel conceptual challenges and perspectives. Philosophers of biology have reacted to these trends when investigating the practice of molecular biology and contributed to scientific debates on methodological and conceptual matters. This article reviews some major philosophical issues in molecular biology. First, philosophical accounts of mechanistic explanation yield a notion of explanation in the context of molecular biology that does not have to rely on laws of nature and comports well with molecular discovery. (...)
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  • Information and the function of neurons.Marc Burock - 2011
    Many of us consider it uncontroversial that information processing is a natural function of the brain. Since functions in biology are only won through empirical investigation, there should be a significant body of unambiguous evidence that supports this functional claim. Before we can interpret the evidence, however, we must ask what it means for a biological system to process information. Although a concept of information is generally accepted in the neurosciences without critique, in other biological sciences applications of information, despite (...)
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  • Educating the design stance: Issues of coherence and transgression. Commentary on Bullot & Reber.Norman H. Freeman & Melissa L. Allen - forthcoming - Behavioral and Brain Sciences.
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  • An Algorithmic Approach to Information and Meaning.Hector Zenil - unknown
    While it is legitimate to study ideas and concepts related to information in their broadest sense, that formal approaches properly belong in specific contexts is a fact that is too often ignored. That their use outside these contexts amounts to misuse or imprecise use cannot and should not be overlooked. This paper presents a framework based on algorithmic information theory for discussing concepts of relevance to information in philosophical contexts. Special attention will be paid to the intersection of syntactic and (...)
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