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  1. Systems Biology and Mechanistic Explanation.Ingo Brigandt, Sara Green & Maureen O'Malley - 2017 - In Stuart Glennan & Phyllis McKay Illari (eds.), The Routledge Handbook of Mechanisms and Mechanical Philosophy. Routledge. pp. 362-374.
    We address the question of whether and to what extent explanatory and modelling strategies in systems biology are mechanistic. After showing how dynamic mathematical models are actually required for mechanistic explanations of complex systems, we caution readers against expecting all systems biology to be about mechanistic explanations. Instead, the aim may be to generate topological explanations that are not standardly mechanistic, or to arrive at design principles that explain system organization and behaviour in general, but not specific mechanisms. These abstraction (...)
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  • How is cancer complex?Anya Plutynski - 2021 - European Journal for Philosophy of Science 11 (2):1-30.
    Cancer is typically spoken of as a “complex” disease. But, in what sense are cancers “complex”? Is there one sense, or several? What implications does this complexity have – both for how we study, and how we intervene upon cancers? The aim of this paper is first, to clarify the variety of senses in which cancer is spoken of as "complex" in the scientific literature, and second, to discover what explanatory and predictive roles such features play.
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  • Can functionality in evolving networks be explained reductively?Ulrich Krohs - 2015 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 53:94-101.
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  • The Sum of the Parts: Large-Scale Modeling in Systems Biology.Fridolin Gross & Sara Green - 2017 - Philosophy, Theory, and Practice in Biology 9 (10).
    Systems biologists often distance themselves from reductionist approaches and formulate their aim as understanding living systems “as a whole.” Yet, it is often unclear what kind of reductionism they have in mind, and in what sense their methodologies would offer a superior approach. To address these questions, we distinguish between two types of reductionism which we call “modular reductionism” and “bottom-up reductionism.” Much knowledge in molecular biology has been gained by decomposing living systems into functional modules or through detailed studies (...)
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  • Science and common sense: perspectives from philosophy and science education.Sara Green - 2019 - Synthese 196 (3):795-818.
    This paper explores the relation between scientific knowledge and common sense intuitions as a complement to Hoyningen-Huene’s account of systematicity. On one hand, Hoyningen-Huene embraces continuity between these in his characterization of scientific knowledge as an extension of everyday knowledge, distinguished by an increase in systematicity. On the other, he argues that scientific knowledge often comes to deviate from common sense as science develops. Specifically, he argues that a departure from common sense is a price we may have to pay (...)
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  • Biology meets Physics: Reductionism and Multi-scale Modeling of Morphogenesis.Sara Green & Robert Batterman - 2017 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 7161:20-34.
    A common reductionist assumption is that macro-scale behaviors can be described "bottom-up" if only sufficient details about lower-scale processes are available. The view that an "ideal" or "fundamental" physics would be sufficient to explain all macro-scale phenomena has been met with criticism from philosophers of biology. Specifically, scholars have pointed to the impossibility of deducing biological explanations from physical ones, and to the irreducible nature of distinctively biological processes such as gene regulation and evolution. This paper takes a step back (...)
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  • Further light on the philosophical significance of Mackay’s theoretical discovery of crystalline pure possibilities.Amihud Gilead - 2018 - Foundations of Chemistry 21 (3):285-296.
    As early as 1981, about 1 year before Shechtman’s discovery of an actual quasicrystal, Alan L. Mackay discussed, in a seminal paper, the first steps for the expansion of crystallography toward its modern phase. In this phase, new possibilities of structures and order, such as the structures of five-fold symmetry, for crystals have been discovered. Medieval Islamic decorators as well as Albrecht Dürer, Johannes Kepler, Roger Penrose, Mackay himself, and other pioneer crystallographers raised important contributions to the theoretical discovery of (...)
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