This paper argues for including stuff in one's ontology. The distinction between things and stuff is first clarified, and then three different ontologies of the physical universe are spelled out: a pure thing ontology, a pure stuff ontology, and a mixed ontology of both things and stuff. Eleven different reasons for including stuff in one's ontology are given. Then five objections to positing stuff are considered and rejected.

Most philosophers consider olfactory experiences to be very poor in comparison to other sense modalities. And because olfactory experiences seem to lack the spatial content necessary to object perception, philosophers tend to maintain that smell is purely sensational or abstract. I argue in this paper that the apparent poverty and spatial indeterminateness of odor experiences does not reflect the “subjective” or “abstract” nature of smell, but only that smell is not directed to particular things. According to the view defended in (...) this paper, odors are properties of stuffs. This view, motivated by several arguments grounded in the phenomenology of olfactory experience, explains in particular why odors appear to be located both in the air around our nose and in the objects from which they emanate. It also explains the power of smell in the task of discriminating chemical compounds. (shrink)

According to process ontology in the philosophy of biology, the living world is better understood as processes rather than as substantial individuals. Within this perspective, an organism does not consist of a hierarchy of structures like a machine, but rather a dynamic hierarchy of processes, dynamically maintained and stabilized at different time scales. With this respect, two processual approaches on enzymes by Stein (Hyle Int J Philos Chem 10(4):5–22, 2004, Process Stud 34:62–80, 2005, Found Chem 8:3–29, 2006) and by Guttinger (...) (Everything Flows: Towards a Processual Philosophy of Biology, Oxford University Press, Oxford, 2018) allows to think of macromolecules as relational and processual entities. In this work, I propose to extend their arguments to another case study within the biochemical domain, which is the case of ligand receptors and receptor-mediated biosignaling. The aim of this work is to analyze the case of G Protein-Coupled Receptors and biosignaling under the consideration of a processual ontology. I will defend that the processual ontology framework is adequate for the biochemical domain and that it allows accounting for the current biochemical knowledge related to the case study. (shrink)

There is consensus within the chemosciences that olfactory perception is of the molecular structure of chemical compounds, yet within philosophical theories of smell there is little agreement about the nature of smell. The paper critically assesses the current state of debate regarding smells within philosophy in the hopes of setting it upon firm scientific footing. The theories to be covered are: Naïve Realism, Hedonic Theories, Process Theory, Odor Theories, and non-Objectivist Theories. The aforementioned theories will be evaluated based on their (...) explanations of the (a) the olfactory quality of a smell, (b) smells as distal entities, and (c) our experience of smells as intentional objects. The paper concludes with a defense of Molecular Structure Theory that demonstrating its superiority in accounting for each of these three aspects of smell. (shrink)

In this paper we will argue that the identity of the entities that inhabit the nanoworld is a contextual identity. To defend that, we will analyse the so-called “biological” identity and the “synthetic” identity of nanomaterials. From this analysis, we will claim that nano-individuals (entities that show an intermediate nature between individuals and stuff), can be adequately understood from the perspective of a processual ontology. With that, we intend to contribute to the philosophical understanding of the ontology of the nano-domain.

According to process ontology in the philosophy of biology, the living world is better understood as processes rather than as substantial individuals. Within this perspective, an organism does not consist of a hierarchy of structures like a machine, but rather a dynamic hierarchy of processes, dynamically maintained and stabilized at different time scales. With this respect, two processual approaches on enzymes by Stein (Hyle Int J Philos Chem 10(4):5–22, 2004, Process Stud 34:62–80, 2005, Found Chem 8:3–29, 2006) and by Guttinger (...) (Everything Flows: Towards a Processual Philosophy of Biology, Oxford University Press, Oxford, 2018) allows to think of macromolecules as relational and processual entities. In this work, I propose to extend their arguments to another case study within the biochemical domain, which is the case of ligand receptors and receptor-mediated biosignaling. The aim of this work is to analyze the case of G Protein-Coupled Receptors and biosignaling under the consideration of a processual ontology. I will defend that the processual ontology framework is adequate for the biochemical domain and that it allows accounting for the current biochemical knowledge related to the case study. (shrink)

I present a formal language that imposes a structure on processes in macro-chemistry. Each symbol in the language invites a type of analysis that is carried out either by looking into the semantics if the language or by looking at the context. Every formal language has assumptions underlying it. The assumptions made in developing the formal language are meant to help with conceptual analysis by inviting certain types of question.

In this paper we will argue that the categories of physical individuals and chemical stuff are not sufficient to face the chemical ontology if nanomaterials are taken into account. From a perspective that considers ontological questions and wonders which the items involved in science are, we will argue that the domain of nanoscience must be considered as populated by entities that are neither individuals, as those of physics, nor stuff, as those items of macro-chemistry. This discussion, in virtue of the (...) analysis of the nature of nanomaterials, leads to propose a proper ontological category for nanoparticles: nanoindividuals. Nanomaterials are sorts of individuals, but they are different from physical individuals and from chemical stuff. We will also claim to contribute to the growing field of the philosophy of chemistry, especially regarding discussions that manifest not only epistemological but also ontological issues. In this scenario, the field on nanoscience is particularly challenging. (shrink)

It is a notion commonly acknowledged that in his work Timaeus the Athenian philosopher Plato (_c_. 429–347 BC) laid down an early chemical theory of the creation, structure and phenomena of the universe. There is much truth in this acknowledgement because Plato’s “chemistry” gives a description of the material world in mathematical terms, an approach that marks an outstanding advancement over cosmologic doctrines put forward by his predecessors, and which was very influential on western culture for many centuries. In the (...) present article, I discuss inter-transformations among Plato’s four types (fire, air, water, and earth) as well as the interpretation they received in the literature. I find that scientists and scholars generally emphasized (and often misunderstood) mathematical aspects of these “reactions” over the philosophical ones. I argue that Plato’s “chemistry” in fact bears on crucial topics of his philosophical system, such as Forms, Becoming, causation and teleology. I propose that consideration of these doctrines help to understand not only the sense of his “chemical” reactions, but also the reason why their stoichiometry is by surface balance and is restricted only to types that come to be and pass away but not to those that provoke the inter-transformations. (shrink)

The purpose of this work is to discuss which relation can be established between molecular chemistry, on the one hand, and macrochemistry and nanochemistry, on the other hand. In order to do this, we will consider molecular chemistry as an underlying level, and macrochemistry and nanochemistry as emergent levels. Emergence is characterized in very different ways in the philosophical literature; we will not discuss those differences. We will address a distinction between inter-domain emergence and intra-domain emergence. It is our purpose (...) to argue that, from a basal micro-molecular level, macrochemistry and nanochemistry emerge in parallel. The emergence of macrochemistry is an inter-domain emergence, while the emergence of the nanolevel is an intra-domain one. If this is the case, therefore macrochemistry and nanochemistry are not “successive” levels, but parallel ones. This discussion will be held from an ontological point of view, instead of the classical characterization in terms of scale. (shrink)

Los criterios de identidad propuestos por la metafísica tradicional debieron ser sometidos a una profunda revisión cuando entró en escena la mecánica cuántica con sus característicos sistemas indistinguibles. En este trabajo aplicamos el modelo de espacios controversiales de Oscar Nudler para analizar la controversia sobre la identidad en el ámbito de la mecánica cuántica y proponer la introducción en el debate de una ontología cuántica de propiedades sin objetos.

resumo: Este artigo pretende mostrar que sem a influência de uma filosofia construtivista que eu denomino boa, representada principalmente por Bruno Latour, a elucidação das substâncias químicas teria sido virtualmente impossível. Sem a noção de materiais “artefatuais” cunhada por eles, a Química Moderna seria impensável a partir dos metaparadigmas em uso no campo atual da história e da filosofia da ciência. A tese central que defendo aqui é a de que o construtivismo, tal como definido pelos antropológos da ciência, é (...) uma maneira disfarçada de colocar a histórica filosofia materialista na trilha da discussão histórica e filosófica das ciências e tecnologias e que isso restaura o papel desempenhado pelos materiais usados pelos cientistas para que sejam exatamente o que são. abstract: This paper aims to show that without the influence of a constructivist philosophy I call good, mainly represented by Bruno Latour, the ontological elucidation of the chemical substances would have been virtually impossible. Without the notion of artifactual materials given by them, would be Modern Chemistry unthinkable from the metaparadigms in use in the present field of history and philosophy of science. The central thesis I defended here is that constructivism as defined by the anthropologists of science is a disguised way of sliding historical materialist philosophy into the mainline of philosophical and historical discussion of the sciences and technologies and that those restore the role played by the materials used by sciences to be exactly what they are. (shrink)

Biological macromolecules, considered as the items of the biochemical domain, are typically conceived under the ontological category of substantial individuals. In this paper, I will argue that the philosophical framework of process ontology, according to which the living world is not populated by individuals but by a dynamic hierarchy of processes, is more adequate to account for the structure and functioning of macromolecules. In particular, I will analyze its application to the phenomenon of cell signaling and to one of its (...) key concepts, cell receptors. Current knowledge in biochemistry allows us to conceive receptors as processual and dynamic entities, relationally stabilized and not separated from the biochemical phenomenon of which they are part. (shrink)