Discovery proceeds in stages of construction, evaluation, and revision. Each of these stages is constrained by what is known or conjectured about what is being discovered. A new characterization of mechanism aids in specifying what is to be discovered when a mechanism is sought. Guidance in discovering mechanisms may be provided by the reasoning strategies of schema instantiation, modular subassembly, and forward/backward chaining. Examples are found in mechanisms in molecular biology, biochemistry, immunology, and evolutionary biology.

In 1958, Francis Crick distinguished the flow of information from the flow of matter and the flow of energy in the mechanism of protein synthesis. Crick’s claims about information flow and coding in molecular biology are viewed from the perspective of a new characterization of mechanisms and from the perspective of information as holding a key to distinguishing work in molecular biology from that of biochemistry in the 1950s–1970s . Flow of matter from beginning to end does not occur in (...) the protein synthesis mechanism; flow of information does. The flow of information and coding in molecular biological mechanisms are distinguished, on the one hand, from formal information theory, and, on the other, from information as used in cognitive neuroscience, where information and representation are often coupled. (shrink)

It is common to defend the Homeostatic Property Cluster ( HPC ) view as a third way between conventionalism and essentialism about natural kinds ( Boyd , 1989, 1991, 1997, 1999; Griffiths , 1997, 1999; Keil , 2003; Kornblith , 1993; Wilson , 1999, 2005; Wilson , Barker , & Brigandt , forthcoming ). According to the HPC view, property clusters are not merely conventionally clustered together; the co-occurrence of properties in the cluster is sustained by a similarity generating ( (...) or homeostatic ) mechanism . I argue that conventional elements are involved partly but ineliminably in deciding which mechanisms define kinds , for deciding when two mechanisms are mechanisms of the same type, and for deciding where one particular mechanism ends and another begins. This intrusion of conventional perspective into the idea of a mechanism raises doubts as to whether the HPC view is sufficiently free of conventional elements to serve as an objective arbiter in scientific disputes about what the kinds of the special sciences should be. (shrink)

Discovery proceeds in stages of construction, evaluation, and revision. Each of these stages is constrained by what is known or conjectured about what is being discovered. A new characterization of mechanism aids in specifying what is to be discovered when a mechanism is sought. Guidance in discovering mechanisms may be provided by the reasoning strategies of schema instantiation, modular subassembly, and forward/backward chaining. Examples are found in mechanisms in molecular biology, biochemistry, immunology, and evolutionary biology.

This paper explores whether natural selection, a putative evolutionary mechanism, and a main one at that, can be characterized on either of the two dominant conceptions of mechanism, due to Glennan and the team of Machamer, Darden, and Craver, that constitute the “new mechanistic philosophy.” The results of the analysis are that neither of the dominant conceptions of mechanism adequately captures natural selection. Nevertheless, the new mechanistic philosophy possesses the resources for an understanding of natural selection under the rubric.

Recently, much philosophical discussion has centered on the best way to characterize the concepts of random drift and natural selection, and, in particular, whether selection and drift can be conceptually distinguished (Beatty, 1984; Brandon, 2005; Hodge, 1983, 1987; Millstein, 2002, 2005; Pfeifer, 2005; Shanahan, 1992; Stephens, 2004). These authors all contend, to a greater or lesser degree, that their concepts make sense of biological practice. So it should be instructive to see how the concepts of drift and selection were distinguished (...) by the disputants in a high-profile debate; debates such as these often force biologists to take a more philosophical turn, discussing the concepts at issue in greater detail than usual. Moreover, it is important to consider a debate where the disputants are actually trying to apply the models of population genetics to natural populations; only then can their proper interpretations become fully apparent. (Indeed, I contend that some of the philosophical confusion has arisen because authors have considered only the models themselves, and not the phenomena that the models are attempting to represent). A prime candidate for just such a case study is what Provine (1986) has termed “The Great Snail Debate,” that is, the debates over the highly polymorphic land snails Cepaea nemoralis and C. hortensis in the 1950s and early 1960s. These studies represent one of the best, if not the best, of the early attempts to demonstrate drift in natural populations. (shrink)

This dissertation starts with a concise overview of what philosophers of science have written about unification and its role in scientific explanation during the last 50 years to provide the reader with some background knowledge. In order to bring unification back into the picture, I have followed two strategies, resulting respectively in Parts I and II of this dissertation. In Part I the idea of unification is used to refine and enrich the dominant causalmechanist and causal-interventionist accounts of scientific explanation. (...) In this part of the dissertation I bracket the classical ideas about unification: deduction and derivation. I do grant, for the sake of argument, that explanations are causal and argue that unification is important from within this causalist perspective. In Part II I continue my strategy of digging into scientific practice to find cases of ontological unification. But here I distance myself from the dominant literature that all explanations must be causal. I will investigate whether explanatory unification is possible in non-causal explanations. Part III contains some further reflections and conclusions. I will formulate my primary results, and I will elaborate on their implications for thinking about unification and explanation. The different forms of ontological unification were quite diverse. This relates to the method I have used. Throughout this dissertation the types of unification that were discussed emerged from digging into scientific practice. This philosophy-of-science-practice approach steered me towards a pluralistic view on unification and on explanation. In this dissertation I do not try to develop a new model of explanation and compare it to existing models. The aim is to show that there are important types of explanatory practice which cannot be properly analyzed if we neglect unification as a desideratum for explanations. (shrink)

Philosophers of science have often favoured reductive approaches to how-possibly explanation. This article identifies three alternative conceptions making how-possibly explanation an interesting phenomenon in its own right. The first variety approaches “how possibly X?” by showing that X is not epistemically impossible. This can sometimes be achieved by removing misunderstandings concerning the implications of one’s current belief system but involves characteristically a modification of this belief system so that acceptance of X does not result in contradiction. The second variety offers (...) a potential how-explanation of X. It is usually followed by a range of further potential how-explanations of the same phenomenon. In recent literature the factual claims implied by the second variety have been downplayed whereas the heuristic role of mapping the space of conceptual possibilities has been emphasized. I will focus especially on this truth-bracketing sense of potentiality when looking closer at the second variety in the paper. The third variety has attracted less interest. It presents a partial how-explanation of X. Typically it aims to establish the existence of a mechanism by which X could be and was generated. The third conception stands out as the natural alternative for the advocate of ontic how-possibly explanations. This article transfers Salmon’s view that explanation-concepts can be broadly divided into epistemic, modal, and ontic to the context of how-possibly explanations. Moreover, it is argued that each of the three above-mentioned varieties of how-possibly explanation occurs in science. To recognize this may be especially relevant for philosophers. We are often misled by the promises of various why-explanation accounts, and seem to have forgotten nearly everything about the diversity of how-possibly explanations. (shrink)

In the literature on scientific explanation, there is a classical distinction between explanations of facts and explanations of laws. This paper is about explanations of facts. Our aim is to analyse the role of unification in explanations of this kind. We discuss five positions with respect to this role, argue for two of them and refute the three others.

This paper discusses the relevance of models for cognitive science that integrate mechanistic and computational aspects. Its main hypothesis is that a model of a cognitive system is satisfactory and explanatory to the extent that it bridges phenomena at multiple mechanistic levels, such that at least several of these mechanistic levels are shown to implement computational processes. The relevant parts of the computation must be mapped onto distinguishable entities and activities of the mechanism. The ideal is contrasted with two other (...) accounts of modeling in cognitive science. The first has been presented by David Marr in combination with a distinction of “levels of computation”. The second builds on a hierarchy of “mechanistic levels” in the sense of Carl Craver. It is argued that neither of the two accounts secures satisfactory explanations of cognitive systems. The mechanistic-computational ideal can be thought of as resulting from a fusion of Marr’s and Craver’s ideals. It is defended as adequate and plausible in light of scientific practice, and certain metaphysical background assumptions are discussed. (shrink)

Philosophers of science typically associate the causal-mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon's account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex-systems approach avoids certain (...) objections to Salmon's account of causal-mechanical explanation. I conclude by discussing how mechanistic explanations can provide understanding by unification. (shrink)

It's widely supposed that unification is an epistemic virtue: the degree to which a theory is unified contributes to its overall confirmation. However, this supposition has consequences which haven't been noted, and which undermine the leading accounts of unification. For, given Hempel's equivalence condition, any epistemic virtue must be such that logically equivalent theories must equally well unify any body of evidence, and logically equivalent bodies of evidence must be equally well unified by any theory. Yet the leading accounts of (...) unification in Bayesian terms, or those in terms of argument patterns, cannot satisfy these constraints conditions. The reason for this runs deep: these accounts of unification make unity depend on factors that vary between equivalent theories: the probabilistic relations of their components, or their relations to argument patterns. The solution is to abandon such accounts and instead adopt an account of unity based on worldly relations such as causation, rather than inferential relations. Such an account effortlessly satisfies the equivalence conditions, and so may describe the epistemic virtue of unity. (shrink)

Philosophers of the social sciences are increasingly convinced that macro-and micro-explanations are complementary. Whereas macro-explanations are broad, micro-explanations are deep. I distinguish between weak and strong complementarity: Strongly complementary explanations improve one another when integrated, weakly complementary explanations do not. To demonstrate the explanatory autonomy of different levels of explanation, explanatory pluralists mostly presuppose the weak form of complementarity. By scrutinizing the notions of explanatory depth and breadth, I argue that macro- and micro-accounts of the same phenomenon are more often (...) strongly complementary. This invites a revision of the pluralist position in which integration promotes explanatory progress. (shrink)

Philosophers of the social sciences are increasingly convinced that macro-and micro-explanations are complementary. Whereas macro-explanations are broad, micro-explanations are deep. I distinguish between weak and strong complementarity: Strongly complementary explanations improve one another when integrated, weakly complementary explanations do not. To demonstrate the explanatory autonomy of different levels of explanation, explanatory pluralists mostly presuppose the weak form of complementarity. By scrutinizing the notions of explanatory depth and breadth, I argue that macro- and micro-accounts of the same phenomenon are more often (...) strongly complementary. This invites a revision of the pluralist position in which integration promotes explanatory progress. Key Words: explanatory pluralism • social science • explanatory depth • explanatory breadth • mechanism. (shrink)

Over the past three decades, the discourse on the mechanistic approach to scientific modelling and explanation has notably sidestepped the topic of simplicity and fit within the process of model selection. This paper aims to rectify this disconnect by delving into the topic of simplicity and fit within the context of mechanistic explanations. More precisely, our primary objective is to address whether simplicity metrics hold any significance within mechanistic explanations. If they do, then our inquiry extends to the suitability of (...) the Akaike Information Criterion (AIC), the Bayesian Information Criterion (BIC), and related criteria in determining the optimal balance of fit and simplicity of mechanistic models. As our main claims, we argue that mechanistic models inherently lend themselves to considerations of simplicity, and that the AIC and BIC and related criteria are applicable to some submodels of certain kinds of mechanistic models. However, these criteria and related criteria designed for curve fitting and causal modelling are of little help for a comparative assessment of full mechanistic models, and a fundamentally different approach is needed to make determinations of this kind. (shrink)

Pluralism with respect to the structure of explanations of facts is not uncommon. Wesley Salmon, for instance, distinguished two types of explanation: causal explanations (which provide insight in the causes of the fact we want to explain) and unification explanations (which fit the explanandum into a unified world view). The pluralism which Salmon and others have defended is compatible with several positions about the exact relation between these two types of explanations. We distinguish four such positions, and argue in favour (...) of one of them. We also compare our results with the views of some authors who have recently written on this subject. (shrink)

Stemming from the realization of the importance of the role of explanation in the science classroom, the Next Generation Science Standards call for appropriately supporting students to learn science, argue from evidence, and provide explanations. Despite the ongoing emphasis on explanations in the science classroom, there seems to be no well-articulated framework that supports students in constructing adequate scientific explanations, or that helps teachers assess student explanations. Our motivation for this article is twofold: First, we think that the ways in (...) which researchers in science education have studied scientific explanation are, at best, leaves much to be desired and, at worst, simply incomplete. Second, we believe that research about the teaching and learning of explanation in science classrooms must be guided by explicit models or frameworks that specify elements involved in constructing explanations particularly applicable to science. More importantly, we think that the development of such models or guidelines should be based on theoretical and philosophical foundations. In order to develop these frameworks or guidelines, we first outline and clarify models of scientific explanation developed by philosophers of science over the last few decades. In the second section of this article, we present a more recent philosophical work on scientific explanation, the pragmatic approach to studying scientific explanations. This approach suggests a toolbox for analyzing scientists’ scientific explanations, which provides a useful instrument to science education. In Section 3, we discuss the ways by which the previous two sections are useful in developing a K-12 scientific explanation schema. Implications for future research on students’ explanations are discussed. (shrink)

A newly emerged field within economics, known as geographical economics claims to have provided a unified approach to the study of spatial agglomerations at different spatial scales by showing how these can be traced back to the same basic economic mechanisms. We analyze this contemporary episode of explanatory unification in relation to major philosophical accounts of unification. In particular, we examine the role of argument patterns in unifying derivations, the role of ontological convictions and mathematical structures in shaping unification, the (...) distinction between derivational and ontological unification, the issue of how explanation and unification relate and finally the idea that unification comes in degrees. (shrink)

By reducing the explanatory power of theories to their unifying power, unificationism seems the best candidate for a theory of explanatory relevance. I argue that Philip Kitcher's version of unificationism, which relies on the central concept of an argument pattern, can in principle not live up to such an expectation, because his notion of stringency, which is needed to distinguish between genuine and spurious unifications, relies on a prior notion of explanatory relevance.

In this paper I propose a type-hierarchy approach to provide an intersubjective framework for the evaluation of evolutionary analogies. This approach develops David Hull’s and others’ attempts to provide full generalisation for selection processes, in order to show that sociocultural development and, particularly, scientific change can be considered as an instance of Darwinian selection. I argue that the recent work by Eileen Cornell Way on type hierarchies can offer the kind of generalisation needed to solve the main problems that still (...) affect Hull’s theory and to show that the evolutionary analogy is, after all, only a particular way of grouping phenomena together. If Hull’s main objective is a unified theory of selection, which supports the idea that science selection and natural selection obey the same laws, I also argue that the type hierarchy approach to models shows that this objective is unsustainable as it stands, and is in need of further development. I will firstly introduce the general outline of the type hierarchy approach to models. Then, after a brief recapitulation of Hull’s main points and difficulties, I will try and construct a hierarchy for a general abstraction of selection processes. Finally I will introduce the main criticisms that Hull’s work has faced from philosophers and scientists, and show how they compare with my proposal. (shrink)

In his later years, Wesley Salmon believed that the two dominant models of scientific explanation (his own causal-mechanical model and the unificationist model) were reconcilable. Salmon envisaged a 'new consensus' about explanation: he suggested that the two models represent two 'complementary' types of explanation, which may 'peacefully coexist' because they illuminate different aspects of scientific understanding. This paper traces the development of Salmon's ideas and presents a critical analysis of his complementarity thesis. Salmon's thesis is rejected on the basis of (...) two objections, and an alternative view of the relation between different types of explanation is proposed. (shrink)