Supposedly, stubbornness on the part of scientists—an unwillingness to change one’s position on a scientific issue even in the face of countervailing evidence—helps efficiently divide scientific labor. Maintaining disagreement is important because it keeps scientists pursuing a diversity of leads rather than all working on the most promising, and stubbornness helps preserve this disagreement. Planck’s observation that “Science progresses one funeral at a time” might therefore be an insight into epistemically beneficial stubbornness on the part of researchers. In conversation with (...) extant formal models, recent empirical research, and a novel agent-based model of my own I explore whether the epistemic goods which stubbornness can secure—disagreement and diversity—are attainable through less-costly methods. I make the case that they are, at least in part, and also use my modeling results to show that if stubbornness is scientifically valuable, it still involves a willingness to change one’s mind. (shrink)

Framing systematics as a field consistent with scientific inquiry entails that inferences of phylogenetic hypotheses have the goal of producing accounts of past causal events that explain differentially shared characters among organisms. Linking observations of characters to inferences occurs by way of why-questions implied by data matrices. Because of their form, why-questions require the use of common-cause theories. Such theories in phylogenetic inferences include natural selection and genetic drift. Selection or drift can explain ‘morphological’ characters but selection cannot be causally (...) applied to sequences since fitness differences cannot be directly associated with individual nucleotides or amino acids. The relation of selection to sequence data is by way of downward or top-down causation from those phenotypes upon which selection occurs. The application of phylogenetic inference to explain sequence data is thus restricted to instances where drift is the relevant theory; those nucleotides or amino acids that can be explained via downward causation are precluded from inclusion in the data matrix. The restrictions on the inclusion of sequence data in phylogenetic inferences equally apply to species hypotheses, precluding the more restrictive approach known as DNA barcoding. Not being able to discern drift and selection as relevant causal mechanisms can severely constrain the inclusion and explanations of sequence data. Implications of such exclusion are discussed in relation to the requirement of total evidence. (shrink)

I argue that if simplicity is a theoretical virtue and some theoretical virtues are the constituents of the aims of theorizing in physics—i.e., theory choice and theory development in physics—and scientific rationality is instrumental rationality, then simplicity cannot be a mere means to achieve the aims. I do this by showing that considering simplicity as a mere means brings about counterintuitive ramifications concerning scientific rationality. These counterintuitive ramifications can be avoided if we consider simplicity a constituent of the aims of (...) theorizing in physics. (shrink)

Three competing ‘methods’ have been endorsed for inferring phylogenetic hypotheses: parsimony, likelihood, and Bayesianism. The latter two have been claimed superior because they take into account rates of sequence substitution. Can rates of substitution be justified on its own accord in inferences of explanatory hypotheses? Answering this question requires addressing four issues: (1) the aim of scientific inquiry, (2) the nature of why-questions, (3) explanatory hypotheses as answers to why-questions, and (4) acknowledging that neither parsimony, likelihood, nor Bayesianism are inferential (...) actions leading to explanatory hypotheses. The aim of scientific inquiry is to acquire causal understanding of effects. Observation statements of organismal characters lead to implicit or explicit why-questions. Those questions, conveyed in data matrices, assume the truth of observation statements, which is contrary to subsequently invoking substitution rates within inferences to phylogenetic hypotheses. Inferences of explanatory hypotheses are abductive in form, such that some version of an evolutionary theory(ies) is/are included or implied. If rates of sequence evolution are to be considered, it must be done prior to, rather than within abduction, which requires renaming those putatively-shared nucleotides subject to substitution rates. There are, however, no epistemic grounds for renaming characters to accommodate rates, calling into question the legitimacy of causally accounting for sequence data. (shrink)

Motivated reasoning occurs when we reason differently about evidence that supports our prior beliefs than when it contradicts those beliefs. Adult participants (N = 377) from Amazon’s Mechanical Turk (MTurk) system completed written responses critically evaluating strengths and weaknesses in a vignette on the topic of anthropogenic climate change (ACC). The vignette had two fictional scientists present prototypical arguments for and against anthropogenic climate change that were constructed with equally flawed and conflicting reasoning. The current study tested and found support (...) for three main hypotheses: cognitive style, personality, and ideology would predict both motivated reasoning and endorsement of human caused climate change; those who accept human-caused climate change will be less likely to engage in biased reasoning and more likely to engage in objective reasoning about climate change than those who deny human activity as a cause of climate change. (144 words). (shrink)