Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain

In Proceedings of KR-MED, CEUR, vol. 222. pp. 57-65 (2006)
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Abstract
Ontology is a burgeoning field, involving researchers from the computer science, philosophy, data and software engineering, logic, linguistics, and terminology domains. Many ontology-related terms with precise meanings in one of these domains have different meanings in others. Our purpose here is to initiate a path towards disambiguation of such terms. We draw primarily on the literature of biomedical informatics, not least because the problems caused by unclear or ambiguous use of terms have been there most thoroughly addressed. We advance a proposal resting on a distinction of three levels too often run together in biomedical ontology research: 1. the level of reality; 2. the level of cognitive representations of this reality; 3. the level of textual and graphical artifacts. We propose a reference terminology for ontology research and development that is designed to serve as common hub into which the several competing disciplinary terminologies can be mapped. We then justify our terminological choices through a critical treatment of the ‘concept orientation’ in biomedical terminology research.
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References found in this work BETA
Fiat Objects.Barry Smith - 2001 - Topoi 20 (2):131-148.
A Theory of Granular Partitions.Thomas Bittner & Barry Smith - 2003 - In M. Duckham, M. F. Goodchild & M. F. Worboys (eds.), Foundations of Geographic Information Science. London: Taylor & Francis. pp. 117-151.
Strategies for Referent Tracking in Electronic Health Records.Werner Ceusters & Barry Smith - 2006 - Journal of Biomedical Informatics 39 (3):362-378.

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Citations of this work BETA
Function, Role and Disposition in Basic Formal Ontology.Robert Arp & Barry Smith - 2008 - Proceedings of Bio-Ontologies Workshop, Intelligent Systems for Molecular Biology (ISMB), Toronto.
Foundations for a Realist Ontology of Mental Disease.Werner Ceusters & Barry Smith - 2010 - Journal of Biomedical Semantics 1 (10):1-23.
The Deep Structure of Lives.Michael Kubovy - 2015 - Philosophia Scientiæ 19:153-176.

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