The ontology of the Gene Ontology

In AMIA 2003 Symposium Proceedings. Washington, DC: AMIA. pp. 609-613 (2003)
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Abstract
The rapidly increasing wealth of genomic data has driven the development of tools to assist in the task of representing and processing information about genes, their products and their functions. One of the most important of these tools is the Gene Ontology (GO), which is being developed in tandem with work on a variety of bioinformatics databases. An examination of the structure of GO, however, reveals a number of problems, which we believe can be resolved by taking account of certain organizing principles drawn from philosophical ontology. We shall explore the results of applying such principles to GO with a view to improving GO’s consistency and coherence and thus its future applicability in the automated processing of biological data.
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Introduction: What is Ontology For.Katherine Munn - 2008 - In Munn Katherine & Smith Barry (eds.), Applied Ontology: An Introduction. Walter de Gruyter. pp. 7-19.
A Terminological and Ontological Analysis of the NCI Thesaurus.Ceusters, Werner; Smith, Barry & Goldberg, Louis
Mining Meaning From Wikipedia.Milne, David; Legg, Catherine; Olena, Medelyan & Ian, Witten
Biomedical Informatics and Granularity.Kumar, Anand & Smith, Barry

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