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  1. In defence of story-telling.Adrian Currie & Kim Sterelny - 2017 - Studies in History and Philosophy of Science Part A 62:14-21.
    We argue that narratives are central to the success of historical reconstruction. Narrative explanation involves tracing causal trajectories across time. The construction of narrative, then, often involves postulating relatively speculative causal connections between comparatively well-established events. But speculation is not always idle or harmful: it also aids in overcoming local underdetermination by forming scaffolds from which new evidence becomes relevant. Moreover, as our understanding of the past’s causal milieus become richer, the constraints on narrative plausibility become increasingly strict: a narrative’s (...)
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  • How Archaeological Evidence Bites Back: Strategies for Putting Old Data to Work in New Ways.Alison Wylie - 2017 - Science, Technology, and Human Values 42 (2):203-225.
    Archaeological data are shadowy in a number of senses. Not only are they notoriously fragmentary but the conceptual and technical scaffolding on which archaeologists rely to constitute these data as evidence can be as constraining as it is enabling. A recurrent theme in internal archaeological debate is that reliance on sedimented layers of interpretative scaffolding carries the risk that “preunderstandings” configure what archaeologists recognize and record as primary data, and how they interpret it as evidence. The selective and destructive nature (...)
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  • The Uses of Argument.Stephen E. Toulmin - 1958 - Philosophy 34 (130):244-245.
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  • When integration fails: Prokaryote phylogeny and the tree of life.Maureen A. O’Malley - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4a):551-562.
    Much is being written these days about integration, its desirability and even its necessity when complex research problems are to be addressed. Seldom, however, do we hear much about the failure of such efforts. Because integration is an ongoing activity rather than a final achievement, and because today’s literature about integration consists mostly of manifesto statements rather than precise descriptions, an examination of unsuccessful integration could be illuminating to understand better how it works. This paper will examine the case of (...)
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  • What Counts as Scientific Data? A Relational Framework.Sabina Leonelli - 2015 - Philosophy of Science 82 (5):810-821.
    This paper proposes an account of scientific data that makes sense of recent debates on data-driven and ‘big data’ research, while also building on the history of data production and use particularly within biology. In this view, ‘data’ is a relational category applied to research outputs that are taken, at specific moments of inquiry, to provide evidence for knowledge claims of interest to the researchers involved. They do not have truth-value in and of themselves, nor can they be seen as (...)
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  • Reconstructing The Past: Parsimony, Evolution, and Inference.Elliott Sober - 1988 - MIT Press.
    Reconstructing the Past seeks to clarify and help resolve the vexing methodological issues that arise when biologists try to answer such questions as whether human beings are more closely related to chimps than they are to gorillas. It explores the case for considering the philosophical idea of simplicity/parsimony as a useful principle for evaluating taxonomic theories of evolutionary relationships. For the past two decades, evolutionists have been vigorously debating the appropriate methods that should be used in systematics, the field that (...)
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  • Methodological and epistemic differences between historical science and experimental science.Carol E. Cleland - 2002 - Philosophy of Science 69 (3):447-451.
    Experimental research is commonly held up as the paradigm of "good" science. Although experiment plays many roles in science, its classical role is testing hypotheses in controlled laboratory settings. Historical science is sometimes held to be inferior on the grounds that its hypothesis cannot be tested by controlled laboratory experiments. Using contemporary examples from diverse scientific disciplines, this paper explores differences in practice between historical and experimental research vis-à-vis the testing of hypotheses. It rejects the claim that historical research is (...)
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  • (2 other versions)Situer l’analyse phylogénétique entre les sciences historiques et expérimentales.Thomas Lombard Bonnin - 2019 - Philosophia Scientiae 23:131-148.
    Cet article propose une étude conceptuelle d’une pratique scientifique. L’analyse phylogénétique, méthode phare en biologie de l’évolution, permet d’inférer les relations évolutives entre différentes espèces ou organismes. De nos jours, elle fait souvent intervenir l’usage de données moléculaires, dont les résultats sont appelés des phylogénies moléculaires. Comment caractériser cette pratique? Nous commençons par une présentation de la méthode, en la découpant en quatre étapes : l’identification puis l’alignement de séquences homologues ; la construction puis l’interprétation d’un arbre phylogénétique. Nous montrons (...)
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  • Knowing the Past: Philosophical Issues of History and Archaeology.Peter Kosso - 2001 - Humanity Books.
    How can we know what really happened in the distant past in places like ancient Egypt, Mesopotamia, Palestine, Greece, and Rome, especially since the evidence is fragmentary and ancient cultures are so different from our own frame of reference? Scholars may examine historical documents and archaeological artifacts, and then make reasonable inferences. But in the final analysis there can be no absolute certainty about events far removed from present reality, and the past must be reconstructed by means of hypotheses that (...)
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  • (1 other version)History, objectivity, and the construction of molecular phylogenies.Edna Suárez-Díaz & Victor H. Anaya-Muñoz - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):451-468.
    Despite the promises made by molecular evolutionists since the early 1960s that phylogenies would be readily reconstructed using molecular data, the construction of molecular phylogenies has both retained many methodological problems of the past and brought up new ones of considerable epistemic relevance. The field is driven not only by changes in knowledge about the processes of molecular evolution, but also by an ever-present methodological anxiety manifested in the constant search for an increased objectivity—or in its converse, the avoidance of (...)
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  • Philosophical Issues in Natural History and Its Historiography.Carol E. Cleland - 2008 - In Aviezer Tucker (ed.), A Companion to the Philosophy of History and Historiography. Malden, MA: Wiley-Blackwell. pp. 44–62.
    This chapter contains sections titled: Introduction The Scientific Method of Yore The Structure and Research Practices of Scientific Historiography of Nature Explanation and Confirmation in Scientific Historiography Narrative Explanation Common Cause Explanation References.
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  • (1 other version)The first eukaryote cell: an unfinished history of contestation.Maureen A. O’Malley - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (3):212-224.
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  • Introduction: Scientific knowledge of the deep past.Adrian Currie & Derek Turner - 2016 - Studies in History and Philosophy of Science Part A 55:43-46.
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  • The Uses of Argument.Frederick L. Will & Stephen Toulmin - 1960 - Philosophical Review 69 (3):399.
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  • Histories of molecules: Reconciling the past.Maureen A. O'Malley - 2016 - Studies in History and Philosophy of Science Part A 55 (C):69-83.
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  • (1 other version)The first eukaryote cell: an unfinished history of contestation.Maureen A. O’Malley - 2010 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 41 (3):212-224.
    The eukaryote cell is one of the most radical innovations in the history of life, and the circumstances of its emergence are still deeply contested. This paper will outline the recent history of attempts to reveal these origins, with special attention to the argumentative strategies used to support claims about the first eukaryote cell. I will focus on two general models of eukaryogenesis: the phagotrophy model and the syntrophy model. As their labels indicate, they are based on claims about metabolic (...)
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  • Historical science, experimental science, and the scientific method.Carol Cleland - 2001
    Many scientists believe that there is a uniform, interdisciplinary method for the prac- tice of good science. The paradigmatic examples, however, are drawn from classical ex- perimental science. Insofar as historical hypotheses cannot be tested in controlled labo- ratory settings, historical research is sometimes said to be inferior to experimental research. Using examples from diverse historical disciplines, this paper demonstrates that such claims are misguided. First, the reputed superiority of experimental research is based upon accounts of scientific methodology (Baconian inductivism (...)
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  • Overcoming the underdetermination of specimens.Caitlin Donahue Wylie - 2019 - Biology and Philosophy 34 (2):24.
    Philosophers of science are well aware that theories are underdetermined by data. But what about the data? Scientific data are selected and processed representations or pieces of nature. What is useless context and what is valuable specimen, as well as how specimens are processed for study, are not obvious or predetermined givens. Instead, they are decisions made by scientists and other research workers, such as technicians, that produce different outcomes for the data. Vertebrate fossils provide a revealing case of this (...)
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  • Marsupial lions and methodological omnivory: function, success and reconstruction in paleobiology.Adrian Currie - 2015 - Biology and Philosophy 30 (2):187-209.
    Historical scientists frequently face incomplete data, and lack direct experimental access to their targets. This has led some philosophers and scientists to be pessimistic about the epistemic potential of the historical sciences. And yet, historical science often produces plausible, sophisticated hypotheses. I explain this capacity to generate knowledge in the face of apparent evidential scarcity by examining recent work on Thylacoleo carnifex, the ‘marsupial lion’. Here, we see two important methodological features. First, historical scientists are methodological omnivores, that is, they (...)
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  • (1 other version)Testing times: Regularities in the historical sciences.Ben Jeffares - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):469-475.
    The historical sciences, such as geology, evolutionary biology, and archaeology, appear to have no means to test hypotheses. However, on closer examination, reasoning in the historical sciences relies upon regularities, regularities that can be tested. I outline the role of regularities in the historical sciences, and in the process, blur the distinction between the historical sciences and the experimental sciences: all sciences deploy theories about the world in their investigations.
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  • (1 other version)History, objectivity, and the construction of molecular phylogenies.Edna Suárez-Díaz & Victor H. Anaya-Muñoz - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):451-468.
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  • (1 other version)Testing times: regularities in the historical sciences.Ben Jeffares - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):469-475.
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