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  1. Varieties of Living Things: Life at the Intersection of Lineage and Metabolism.John Dupré & Maureen A. O'Malley - 2009 - Philosophy, Theory, and Practice in Biology 1 (20130604).
    We address three fundamental questions: What does it mean for an entity to be living? What is the role of inter-organismic collaboration in evolution? What is a biological individual? Our central argument is that life arises when lineage-forming entities collaborate in metabolism. By conceiving of metabolism as a collaborative process performed by functional wholes, which are associations of a variety of lineage-forming entities, we avoid the standard tension between reproduction and metabolism in discussions of life – a tension particularly evident (...)
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  • (1 other version)Scientific Explanation and the Causal Structure of the World.Wesley C. Salmon - 1984 - Princeton University Press.
    The philosophical theory of scientific explanation proposed here involves a radically new treatment of causality that accords with the pervasively statistical character of contemporary science. Wesley C. Salmon describes three fundamental conceptions of scientific explanation--the epistemic, modal, and ontic. He argues that the prevailing view is untenable and that the modal conception is scientifically out-dated. Significantly revising aspects of his earlier work, he defends a causal/mechanical theory that is a version of the ontic conception. Professor Salmon's theory furnishes a robust (...)
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  • Philosophy of biological science.David L. Hull - 1974 - Englewood Cliffs, N.J.,: Prentice-Hall.
    Compares classic and contemporary theories of genetics and evolution and explores the role of teleological thought in biology.
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  • Making things happen: a theory of causal explanation.James F. Woodward - 2003 - New York: Oxford University Press.
    Woodward's long awaited book is an attempt to construct a comprehensive account of causation explanation that applies to a wide variety of causal and explanatory claims in different areas of science and everyday life. The book engages some of the relevant literature from other disciplines, as Woodward weaves together examples, counterexamples, criticisms, defenses, objections, and replies into a convincing defense of the core of his theory, which is that we can analyze causation by appeal to the notion of manipulation.
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  • How the laws of physics lie.Nancy Cartwright - 1983 - New York: Oxford University Press.
    In this sequence of philosophical essays about natural science, the author argues that fundamental explanatory laws, the deepest and most admired successes of modern physics, do not in fact describe regularities that exist in nature. Cartwright draws from many real-life examples to propound a novel distinction: that theoretical entities, and the complex and localized laws that describe them, can be interpreted realistically, but the simple unifying laws of basic theory cannot.
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  • Of Humean bondage.Christopher Hitchcock - 2003 - British Journal for the Philosophy of Science 54 (1):1-25.
    There are many ways of attaching two objects together: for example, they can be connected, linked, tied or bound together; and the connection, link, tie or bind can be made of chain, rope, or cement. Every one of these binding methods has been used as a metaphor for causation. What is the real significance of these metaphors? They express a commitment to a certain way of thinking about causation, summarized in the following thesis: ‘In any concrete situation, there is an (...)
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  • Interpreting causality in the health sciences.Federica Russo & Jon Williamson - 2007 - International Studies in the Philosophy of Science 21 (2):157 – 170.
    We argue that the health sciences make causal claims on the basis of evidence both of physical mechanisms, and of probabilistic dependencies. Consequently, an analysis of causality solely in terms of physical mechanisms or solely in terms of probabilistic relationships, does not do justice to the causal claims of these sciences. Yet there seems to be a single relation of cause in these sciences - pluralism about causality will not do either. Instead, we maintain, the health sciences require a theory (...)
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  • (4 other versions)Causation.David Lewis - 1973 - Journal of Philosophy 70 (17):556-567.
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  • Probabilistic causality and the question of transitivity.Ellery Eells & Elliott Sober - 1983 - Philosophy of Science 50 (1):35-57.
    After clarifying the probabilistic conception of causality suggested by Good (1961-2), Suppes (1970), Cartwright (1979), and Skyrms (1980), we prove a sufficient condition for transitivity of causal chains. The bearing of these considerations on the units of selection problem in evolutionary theory and on the Newcomb paradox in decision theory is then discussed.
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  • Thinking about mechanisms.Peter Machamer, Lindley Darden & Carl F. Craver - 2000 - Philosophy of Science 67 (1):1-25.
    The concept of mechanism is analyzed in terms of entities and activities, organized such that they are productive of regular changes. Examples show how mechanisms work in neurobiology and molecular biology. Thinking in terms of mechanisms provides a new framework for addressing many traditional philosophical issues: causality, laws, explanation, reduction, and scientific change.
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  • The Disorder of Things: Metaphysical Foundations of the Disunuty of Science.[author unknown] - 1995 - Proceedings and Addresses of the American Philosophical Association 68 (3):84-86.
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  • Nature's Capacities and Their Measurement.Tim Maudlin & Nancy Cartwright - 1993 - Journal of Philosophy 90 (11):599.
    This book on the philosophy of science argues for an empiricism, opposed to the tradition of David Hume, in which singular rather than general causal claims are primary; causal laws express facts about singular causes whereas the general causal claims of science are ascriptions of capacities or causal powers, capacities to make things happen. Taking science as measurement, Cartwright argues that capacities are necessary for science and that these can be measured, provided suitable conditions are met. There are case studies (...)
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  • Probabilistic Causality.Ellery Eells - 1991 - Cambridge, England: Cambridge University Press.
    In this important book, Ellery Eells explores and refines philosophical conceptions of probabilistic causality. In a probabilistic theory of causation, causes increase the probability of their effects rather than necessitate their effects in the ways traditional deterministic theories have specified. Philosophical interest in this subject arises from attempts to understand population sciences as well as indeterminism in physics. Taking into account issues involving spurious correlation, probabilistic causal interaction, disjunctive causal factors, and temporal ideas, Professor Eells advances the analysis of what (...)
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  • (1 other version)Metagenomics and biological ontology.John Dupré & Maureen A. O’Malley - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):834-846.
    Metagenomics is an emerging microbial systems science that is based on the large-scale analysis of the DNA of microbial communities in their natural environments. Studies of metagenomes are revealing the vast scope of biodiversity in a wide range of environments, as well as new functional capacities of individual cells and communities, and the complex evolutionary relationships between them. Our examination of this science focuses on the ontological implications of these studies of metagenomes and metaorganisms, and what they mean for common (...)
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  • Getting Causes From Powers.Stephen Mumford & Rani Lill Anjum - 2011 - Oxford, GB: Oxford University Press. Edited by Rani Lill Anjum.
    Causation is everywhere in the world: it features in every science and technology. But how much do we understand it? Mumford and Anjum develop a new theory of causation based on an ontology of real powers or dispositions. They provide the first detailed outline of a thoroughly dispositional approach, and explore its surprising features.
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  • Mechanism and Biological Explanation.William Bechtel - 2011 - Philosophy of Science 78 (4):533-557.
    This article argues that the basic account of mechanism and mechanistic explanation, involving sequential execution of qualitatively characterized operations, is itself insufficient to explain biological phenomena such as the capacity of living organisms to maintain themselves as systems distinct from their environment. This capacity depends on cyclic organization, including positive and negative feedback loops, which can generate complex dynamics. Understanding cyclically organized mechanisms with complex dynamics requires coordinating research directed at decomposing mechanisms into parts and operations with research using computational (...)
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  • What is a mechanism? Thinking about mechanisms across the sciences.Phyllis McKay Illari & Jon Williamson - 2012 - European Journal for Philosophy of Science 2 (1):119-135.
    After a decade of intense debate about mechanisms, there is still no consensus characterization. In this paper we argue for a characterization that applies widely to mechanisms across the sciences. We examine and defend our disagreements with the major current contenders for characterizations of mechanisms. Ultimately, we indicate that the major contenders can all sign up to our characterization.
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  • Four Dimensionalism: An Ontology of Persistence and Time.Theodore Sider - 2004 - Philosophy and Phenomenological Research 68 (3):642-647.
    Precis of my book by this title, for a symposium.
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  • Causal pluralism.Peter Godfrey-Smith - 2009 - In Helen Beebee, Christopher Hitchcock & Peter Menzies (eds.), The Oxford Handbook of Causation. Oxford University Press UK. pp. 326--337.
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  • 1953 and all that. A tale of two sciences.Philip Kitcher - 1984 - Philosophical Review 93 (3):335-373.
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  • A tale of two effects.Christopher Hitchcock - 2001 - Philosophical Review 110 (3):361-396.
    In recent years, there has been a philosophical cottage industry producing arguments that our concept of causation is not univocal: that there are in fact two concepts of causation, corresponding to distinct species of causal relation. Papers written in this tradition have borne titles like “Two Concepts of Cause” and “Two Concepts of Causation”. With due apologies to Charles Dickens, I hereby make my own contribution to this genre.
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  • Causation: One word, many things.Nancy Cartwright - 2004 - Philosophy of Science 71 (5):805-819.
    We currently have on offer a variety of different theories of causation. Many are strikingly good, providing detailed and plausible treatments of exemplary cases; and all suffer from clear counterexamples. I argue that, contra Hume and Kant, this is because causation is not a single, monolithic concept. There are different kinds of causal relations imbedded in different kinds of systems, readily described using thick causal concepts. Our causal theories pick out important and useful structures that fit some familiar cases—cases we (...)
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  • (4 other versions)Causation.David Lewis - 1986 - In David K. Lewis (ed.), Philosophical Papers Vol. II. Oxford University Press. pp. 159-213.
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  • Probabilistic Causality Emancipated.John Dupré - 1984 - Midwest Studies in Philosophy 9 (1):169-175.
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  • Mechanisms and the nature of causation.Stuart S. Glennan - 1996 - Erkenntnis 44 (1):49--71.
    In this paper I offer an analysis of causation based upon a theory of mechanisms-complex systems whose internal parts interact to produce a system's external behavior. I argue that all but the fundamental laws of physics can be explained by reference to mechanisms. Mechanisms provide an epistemologically unproblematic way to explain the necessity which is often taken to distinguish laws from other generalizations. This account of necessity leads to a theory of causation according to which events are causally related when (...)
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  • Process Metaphysics. An Introduction to Process Philosophy.Nicholas Rescher - 1996 - Transactions of the Charles S. Peirce Society 32 (4):689-697.
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  • Phil Dowe, Physical Causation. [REVIEW]Phil Dowe - 2002 - Erkenntnis 56 (2):258-263.
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  • Causal Pluralism versus Epistemic Causality.Jon Williamson - 2006 - Philosophica 77 (1):69-96.
    It is tempting to analyse causality in terms of just one of the indicators of causal relationships, e.g., mechanisms, probabilistic dependencies or independencies, counterfactual conditionals or agency considerations. While such an analysis will surely shed light on some aspect of our concept of cause, it will fail to capture the whole, rather multifarious, notion. So one might instead plump for pluralism: a different analysis for a different occasion. But we do not seem to have lots of different concepts of cause (...)
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  • (1 other version)Process and Reality: An Essay in Cosmology.A. N. Whitehead - 1929 - Mind 39 (156):466-475.
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  • Process Metaphysics: An Introduction to Process Philosophy.Nicholas Rescher - 1996 - State University of New York Press.
    Presents a synoptic, compact, and accessible exposition of this influential and interesting sector of twentieth-century American philosophy.
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  • Towards a processual microbial ontology.Eric Bapteste & John Dupre - 2013 - Biology and Philosophy 28 (2):379-404.
    Standard microbial evolutionary ontology is organized according to a nested hierarchy of entities at various levels of biological organization. It typically detects and defines these entities in relation to the most stable aspects of evolutionary processes, by identifying lineages evolving by a process of vertical inheritance from an ancestral entity. However, recent advances in microbiology indicate that such an ontology has important limitations. The various dynamics detected within microbiological systems reveal that a focus on the most stable entities (or features (...)
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  • (1 other version)Metagenomics and biological ontology.John Dupré & Maureen A. O’Malley - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):834-846.
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  • Probabilistic Causality.Wayne A. Davis & Ellery Eells - 1993 - Philosophical Review 102 (3):410.
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  • Physical Causation.Phil Dowe - 2003 - Philosophy and Phenomenological Research 67 (1):244-248.
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