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  1. Mechanism and Biological Explanation.William Bechtel - 2011 - Philosophy of Science 78 (4):533-557.
    This article argues that the basic account of mechanism and mechanistic explanation, involving sequential execution of qualitatively characterized operations, is itself insufficient to explain biological phenomena such as the capacity of living organisms to maintain themselves as systems distinct from their environment. This capacity depends on cyclic organization, including positive and negative feedback loops, which can generate complex dynamics. Understanding cyclically organized mechanisms with complex dynamics requires coordinating research directed at decomposing mechanisms into parts and operations with research using computational (...)
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  • What is a mechanism? Thinking about mechanisms across the sciences.Phyllis Illari & Jon Williamson - 2012 - European Journal for Philosophy of Science 2 (1):119-135.
    After a decade of intense debate about mechanisms, there is still no consensus characterization. In this paper we argue for a characterization that applies widely to mechanisms across the sciences. We examine and defend our disagreements with the major current contenders for characterizations of mechanisms. Ultimately, we indicate that the major contenders can all sign up to our characterization.
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  • Four Dimensionalism: An Ontology of Persistence and Time.Theodore Sider - 2004 - Philosophy and Phenomenological Research 68 (3):642-647.
    Precis of my book by this title, for a symposium.
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  • Causal Pluralism versus Epistemic Causality.Jon Williamson - 2006 - Philosophica 77 (1):69-96.
    It is tempting to analyse causality in terms of just one of the indicators of causal relationships, e.g., mechanisms, probabilistic dependencies or independencies, counterfactual conditionals or agency considerations. While such an analysis will surely shed light on some aspect of our concept of cause, it will fail to capture the whole, rather multifarious, notion. So one might instead plump for pluralism: a different analysis for a different occasion. But we do not seem to have lots of different concepts of cause (...)
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  • Mechanisms and the nature of causation.Stuart S. Glennan - 1996 - Erkenntnis 44 (1):49--71.
    In this paper I offer an analysis of causation based upon a theory of mechanisms-complex systems whose internal parts interact to produce a system's external behavior. I argue that all but the fundamental laws of physics can be explained by reference to mechanisms. Mechanisms provide an epistemologically unproblematic way to explain the necessity which is often taken to distinguish laws from other generalizations. This account of necessity leads to a theory of causation according to which events are causally related when (...)
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  • Interpreting causality in the health sciences.Federica Russo & Jon Williamson - 2007 - International Studies in the Philosophy of Science 21 (2):157 – 170.
    We argue that the health sciences make causal claims on the basis of evidence both of physical mechanisms, and of probabilistic dependencies. Consequently, an analysis of causality solely in terms of physical mechanisms or solely in terms of probabilistic relationships, does not do justice to the causal claims of these sciences. Yet there seems to be a single relation of cause in these sciences - pluralism about causality will not do either. Instead, we maintain, the health sciences require a theory (...)
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  • (4 other versions)Causation.David Lewis - 1973 - Journal of Philosophy 70 (17):556-567.
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  • A tale of two effects.Christopher Hitchcock - 2001 - Philosophical Review 110 (3):361-396.
    In recent years, there has been a philosophical cottage industry producing arguments that our concept of causation is not univocal: that there are in fact two concepts of causation, corresponding to distinct species of causal relation. Papers written in this tradition have borne titles like “Two Concepts of Cause” and “Two Concepts of Causation”. With due apologies to Charles Dickens, I hereby make my own contribution to this genre.
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  • Probabilistic causality and the question of transitivity.Ellery Eells & Elliott Sober - 1983 - Philosophy of Science 50 (1):35-57.
    After clarifying the probabilistic conception of causality suggested by Good (1961-2), Suppes (1970), Cartwright (1979), and Skyrms (1980), we prove a sufficient condition for transitivity of causal chains. The bearing of these considerations on the units of selection problem in evolutionary theory and on the Newcomb paradox in decision theory is then discussed.
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  • Causation: One word, many things.Nancy Cartwright - 2004 - Philosophy of Science 71 (5):805-819.
    We currently have on offer a variety of different theories of causation. Many are strikingly good, providing detailed and plausible treatments of exemplary cases; and all suffer from clear counterexamples. I argue that, contra Hume and Kant, this is because causation is not a single, monolithic concept. There are different kinds of causal relations imbedded in different kinds of systems, readily described using thick causal concepts. Our causal theories pick out important and useful structures that fit some familiar cases—cases we (...)
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  • Thinking about mechanisms.Peter Machamer, Lindley Darden & Carl F. Craver - 2000 - Philosophy of Science 67 (1):1-25.
    The concept of mechanism is analyzed in terms of entities and activities, organized such that they are productive of regular changes. Examples show how mechanisms work in neurobiology and molecular biology. Thinking in terms of mechanisms provides a new framework for addressing many traditional philosophical issues: causality, laws, explanation, reduction, and scientific change.
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  • Physical Causation.Phil Dowe - 2003 - Philosophy and Phenomenological Research 67 (1):244-248.
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  • Process Metaphysics. An Introduction to Process Philosophy.Nicholas Rescher - 1996 - Transactions of the Charles S. Peirce Society 32 (4):689-697.
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  • Probabilistic Causality.Wayne A. Davis & Ellery Eells - 1993 - Philosophical Review 102 (3):410.
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  • Probabilistic Causality Emancipated.John Dupré - 1984 - Midwest Studies in Philosophy 9 (1):169-175.
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  • Varieties of Living Things: Life at the Intersection of Lineage and Metabolism.John Dupré & Maureen A. O'Malley - 2009 - Philosophy, Theory, and Practice in Biology 1 (20130604).
    We address three fundamental questions: What does it mean for an entity to be living? What is the role of inter-organismic collaboration in evolution? What is a biological individual? Our central argument is that life arises when lineage-forming entities collaborate in metabolism. By conceiving of metabolism as a collaborative process performed by functional wholes, which are associations of a variety of lineage-forming entities, we avoid the standard tension between reproduction and metabolism in discussions of life – a tension particularly evident (...)
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  • 1953 and all that. A tale of two sciences.Philip Kitcher - 1984 - Philosophical Review 93 (3):335-373.
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  • (1 other version)Process and Reality: An Essay in Cosmology.A. N. Whitehead - 1929 - Mind 39 (156):466-475.
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  • (1 other version)Metagenomics and biological ontology.John Dupré & Maureen A. O’Malley - 2007 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):834-846.
    Metagenomics is an emerging microbial systems science that is based on the large-scale analysis of the DNA of microbial communities in their natural environments. Studies of metagenomes are revealing the vast scope of biodiversity in a wide range of environments, as well as new functional capacities of individual cells and communities, and the complex evolutionary relationships between them. Our examination of this science focuses on the ontological implications of these studies of metagenomes and metaorganisms, and what they mean for common (...)
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  • Phil Dowe, Physical Causation. [REVIEW]Phil Dowe - 2002 - Erkenntnis 56 (2):258-263.
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  • Towards a processual microbial ontology.Eric Bapteste & John Dupre - 2013 - Biology and Philosophy 28 (2):379-404.
    Standard microbial evolutionary ontology is organized according to a nested hierarchy of entities at various levels of biological organization. It typically detects and defines these entities in relation to the most stable aspects of evolutionary processes, by identifying lineages evolving by a process of vertical inheritance from an ancestral entity. However, recent advances in microbiology indicate that such an ontology has important limitations. The various dynamics detected within microbiological systems reveal that a focus on the most stable entities (or features (...)
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  • Of Humean bondage.Christopher Hitchcock - 2003 - British Journal for the Philosophy of Science 54 (1):1-25.
    There are many ways of attaching two objects together: for example, they can be connected, linked, tied or bound together; and the connection, link, tie or bind can be made of chain, rope, or cement. Every one of these binding methods has been used as a metaphor for causation. What is the real significance of these metaphors? They express a commitment to a certain way of thinking about causation, summarized in the following thesis: ‘In any concrete situation, there is an (...)
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  • (1 other version)Metagenomics and biological ontology.John Dupré & Maureen A. O’Malley - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 38 (4):834-846.
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  • (2 other versions)The Disorder of Things: Metaphysical Foundations of the Disunuty of Science.[author unknown] - 1995 - Proceedings and Addresses of the American Philosophical Association 68 (3):84-86.
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  • 3.Wesley C. Salmon - 1984 - In Scientific Explanation and the Causal Structure of the World. Princeton University Press. pp. 78-109.
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