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Molecular and Developmental Biology

In Peter Machamer & Michael Silberstein (eds.), The Blackwell Guide to the Philosophy of Science. Malden, MA: Blackwell Publishers. pp. 252-271 (2002)

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  1. Genetics and Reductionism.Sahotra Sarkar - 2012 - Cambridge University Press.
    With the advent of the Human Genome Project there have been many claims for the genetic origins of complex human behavior including insanity, criminality, and intelligence. But what does it really mean to call something 'genetic'? This is the fundamental question that Sahotra Sarkar's book addresses. The author analyses the nature of reductionism in classical and molecular genetics. He shows that there are two radically different kinds of reductionist explanation: genetic reduction (as found in classical genetics) and physical reduction (found (...)
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  • The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme.S. J. Gould & R. C. Lewontin - 1994 - In Elliott Sober (ed.), Conceptual Issues in Evolutionary Biology. The Mit Press. Bradford Books. pp. 73-90.
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  • Innateness is canalization: In defense of a developmental account of innateness.Andre Ariew - 1999 - In Philosophy of Science. MIT Press, Cambridge, MA. pp. S19-S27.
    Lorenz proposed in his (1935) articulation of a theory of behavioral instincts that the objective of ethology is to distinguish behaviors that are “innate” from behaviors that are “learned” (or “acquired”). Lorenz’s motive was to open the investigation of certain “adaptive” behaviors to evolutionary theorizing. Accordingly, since innate behaviors are “genetic”, they are open to such investigation. By Lorenz’s light an innate/acquired or learned dichotomy rested on a familiar Darwinian distinction between genes and environments. Ever since Lorenz, ascriptions of innateness (...)
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  • Punctuated Equilibria: An Alternative to Phyletic Gradualism.Niles Eldredge & Stephen Jay Gould - 1972 - In Thomas J. M. Schopf (ed.), Models in Paleobiology. Freeman Cooper. pp. 82-115.
    They are correct that punctuated equilibria apply to sexually reproducing organisms and that morphological evolutionary change is regarded as largely (if not exclusively) correlated with speciation events. However, they err in suggesting that we attribute stasis strictly to "developmental constraints," which represent only one of a set of possible mechanisms that we have suggested for the causes of stasis. Others include habitat tracking and the internal structure of species themselves [for example, (2)].
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  • Developmental Constraints, Generative Entrenchment, and the Innate-Acquired Distinction.William C. Wimsatt - 1986 - In William Bechtel (ed.), Integrating Scientific Disciplines. University of Chicago Press. pp. 185--208.
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  • Darwin's Dangerous Idea: Evolution and the Meanings of Life.David L. Hull - 1997 - British Journal for the Philosophy of Science 48 (3):435-438.
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  • Darwin's Dangerous Idea.Daniel Dennett - 1994 - Behavior and Philosophy 24 (2):169-174.
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  • The units of selection revisited: The modules of selection. [REVIEW]Robert N. Brandon - 1999 - Biology and Philosophy 14 (2):167-180.
    Richard Lewontin's (1970) early work on the units of selection initiated the conceptual and theoretical investigations that have led to the hierarchical perspective on selection that has reached near consensus status today. This paper explores other aspects of his work, work on what he termed continuity and quasi-independence, that connect to contemporary explorations of modularity in development and evolution. I characterize such modules and argue that they are the true units of selection in that they are what evolution by natural (...)
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  • Two concepts of constraint: Adaptationism and the challenge from developmental biology.Ron Amundson - 1994 - Philosophy of Science 61 (4):556-578.
    The so-called "adaptationism" of mainstream evolutionary biology has been criticized from a variety of sources. One, which has received relatively little philosophical attention, is developmental biology. Developmental constraints are said to be neglected by adaptationists. This paper explores the divergent methodological and explanatory interests that separate mainstream evolutionary biology from its embryological and developmental critics. It will focus on the concept of constraint itself; even this central concept is understood differently by the two sides of the dispute.
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  • The Structure of Science: Problems in the Logic of Scientific Explanation.Ernest Nagel - 1961 - New York, NY, USA: Harcourt, Brace & World.
    Introduction: Science and Common Sense Long before the beginnings of modern civilization, men ac- quired vast funds of information about their environment. ...
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  • Genes made molecular.C. Kenneth Waters - 1994 - Philosophy of Science 61 (2):163-185.
    This paper investigates what molecular biology has done for our understanding of the gene. I base a new account of the gene concept of classical genetics on the classical dogma that gene differences cause phenotypic differences. Although contemporary biologists often think of genes in terms of this concept, molecular biology provides a second way to understand genes. I clarify this second way by articulating a molecular gene concept. This concept unifies our understanding of the molecular basis of a wide variety (...)
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  • The Return of the Gene.Kim Sterelny & Philip Kitcher - 1988 - Journal of Philosophy 85 (7):339.
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  • The extended replicator.Kim Sterelny, Kelly C. Smith & Michael Dickison - 1996 - Biology and Philosophy 11 (3):377-403.
    This paper evaluates and criticises the developmental systems conception of evolution and develops instead an extension of the gene's eye conception of evolution. We argue (i) Dawkin's attempt to segregate developmental and evolutionary issues about genes is unsatisfactory. On plausible views of development it is arbitrary to single out genes as the units of selection. (ii) The genotype does not carry information about the phenotype in any way that distinguishes the role of the genes in development from that other factors. (...)
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  • The Watson-Crick model and reductionism.Kenneth F. Schaffner - 1969 - British Journal for the Philosophy of Science 20 (4):325-348.
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  • Approaches to reduction.Kenneth F. Schaffner - 1967 - Philosophy of Science 34 (2):137-147.
    Four current accounts of theory reduction are presented, first informally and then formally: (1) an account of direct theory reduction that is based on the contributions of Nagel, Woodger, and Quine, (2) an indirect reduction paradigm due to Kemeny and Oppenheim, (3) an "isomorphic model" schema traceable to Suppes, and (4) a theory of reduction that is based on the work of Popper, Feyerabend, and Kuhn. Reference is made, in an attempt to choose between these schemas, to the explanation of (...)
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  • Reductionism redux: Computing the embryo. [REVIEW]Alex Rosenberg - 1997 - Biology and Philosophy 12 (4):445-470.
    This paper argues that the consensus physicalist antireductionism in the philosophy of biology cannot accommodate the research strategy or indeed the recent findings of molecular developmental biology. After describing Wolperts programmatic claims on its behalf, and recent work by Gehring and others to identify the molecular determinants of development, the paper attempts to identify the relationship between evolutionary and developmental biology by reconciling two apparently conflicting accounts of bio-function – Wrights and Nagels (as elaborated by Cummins). Finally, the paper seeks (...)
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  • Reality and representation.David Papineau - 1987 - New York: Blackwell.
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  • Reality and Representation.Reinaldo Elugardo - 1987 - Noûs 26 (3):379-389.
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  • 1953 and all that. A tale of two sciences.Philip Kitcher - 1984 - Philosophical Review 93 (3):335-373.
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  • Understanding development.Evelyn Fox Keller - 1999 - Biology and Philosophy 14 (3):321-330.
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  • What is the developmentalist challenge?Paul E. Griffiths & Robin D. Knight - 1998 - Philosophy of Science 65 (2):253-258.
    Kenneth C. Schaffner's paper is an important contribution to the literature on behavioral genetics and on genetics in general. Schaffner has a long record of injecting real molecular biology into philosophical discussions of genetics. His treatments of the reduction of Mendelian to molecular genetics first drew philosophical attention to the problems of detail that have fuelled both anti-reductionism and more sophisticated models of theory reduction. An injection of molecular detail into discussions of genetics is particularly necessary at the present time, (...)
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  • Developmental Systems and Evolutionary Explanation.P. E. Griffiths & R. D. Gray - 1994 - Journal of Philosophy 91 (6):277-304.
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  • Darwinism, process structuralism, and natural kinds.Paul E. Griffiths - 1996 - Philosophy of Science 63 (3):S1-S9.
    Darwinists classify biological traits either by their ancestry (homology) or by their adaptive role. Only the latter can provide traditional natural kinds, but only the former is practicable. Process structuralists exploit this embarrassment to argue for non-Darwinian classifications in terms of underlying developmental mechanisms. This new taxonomy will also explain phylogenetic inertia and developmental constraint. I argue that Darwinian homologies are natural kinds despite having historical essences and being spatio-temporally restricted. Furthermore, process structuralist explanations of biological form require an unwarranted (...)
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  • Adaptationism and the power of selection.Peter Godfrey-Smith - 1999 - Biology and Philosophy 14 (2):181-194.
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  • The pragmatics of explanation.Bas C. Van Fraassen - 1977 - American Philosophical Quarterly 14 (2):143-150.
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  • The Origins of Order: Self Organization and Selection in Evolution.Stuart A. Kauffman - 1993 - Oxford University Press.
    Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order widely observed throughout nature. Kauffman here argues that self-organization plays an (...)
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  • Discovery and explanation in biology and medicine.Kenneth F. Schaffner - 1993 - Chicago: University of Chicago Press.
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  • Images of Development: Environmental Causes in Ontogeny.Cor van der Weele - 1999 - State University of New York Press.
    Questions the dominant biological approach of explaining animal development as entirely genetic by exploring the explanatory value of investigating environmental influences.
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  • Language, Thought, and Other Biological Categories: New Foundations for Realism.Ruth Garrett Millikan - 1984 - MIT Press.
    Preface by Daniel C. Dennett Beginning with a general theory of function applied to body organs, behaviors, customs, and both inner and outer representations, ...
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  • Philosophy of biological science.David L. Hull - 1974 - Englewood Cliffs, N.J.,: Prentice-Hall.
    Compares classic and contemporary theories of genetics and evolution and explores the role of teleological thought in biology.
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  • What’s Within? Nativism Reconsidered.Fiona Cowie - 1998 - New York, US: Oxford University Press USA.
    This powerfully iconoclastic book reconsiders the influential nativist position toward the mind. Nativists assert that some concepts, beliefs, or capacities are innate or inborn: "native" to the mind rather than acquired. Fiona Cowie argues that this view is mistaken, demonstrating that nativism is an unstable amalgam of two quite different--and probably inconsistent--theses about the mind. Unlike empiricists, who postulate domain-neutral learning strategies, nativists insist that some learning tasks require special kinds of skills, and that these skills are hard-wired into our (...)
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  • The Concept of the Gene in Development and Evolution: Historical and Epistemological Perspectives.Peter J. Beurton, Raphael Falk & Hans-Jörg Rheinberger (eds.) - 2000 - Cambridge University Press.
    Advances in molecular biological research in the latter half of the twentieth century have made the story of the gene vastly complicated: the more we learn about genes, the less sure we are of what a gene really is. Knowledge about the structure and functioning of genes abounds, but the gene has also become curiously intangible. This collection of essays renews the question: what are genes? Philosophers, historians and working scientists re-evaluate the question in this volume, treating the gene as (...)
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  • Reductive Explanation: A Functional Account.William C. Wimsatt - 1972 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1974:671-710.
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  • Darwinism Evolving. System Dynamics and the Genealogy of Natural Selection.David J. Depew, Bruce H. Weber & Ernst Mayr - 1996 - History and Philosophy of the Life Sciences 18 (1):135.
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  • Sex and Death: An Introduction to Philosophy of Biology. [REVIEW]Mohan Matthen - 2002 - Philosophical Books 43 (1):78-80.
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  • Language, Thought, and Other Biological Categories.Ruth Garrett Millikan - 1984 - Behaviorism 14 (1):51-56.
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  • The return of the Gene.Kim Sterelny & Philip Kitcher - 1988 - Journal of Philosophy 85 (7):339-361.
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  • The Structure of Science: Problems in the Logic of Scientific Explanation.Ernest Nagel - 1961 - Mind 72 (287):429-441.
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  • Reality and Representation.David Papineau - 1988 - Mind 97 (388):629-632.
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  • Why the Anti-Reductionist Consensus Won’t Survive: The Case of Classical Mendelian Genetics.C. Kenneth Waters - 1990 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1990:125-139.
    Philosophers now treat the relationship between classical genetics and molecular biology as a paradigm of nonreduction and this example is playing an increasingly prominent role in debates about the reducibility of theories in other sciences. This paper shows that the anti-reductionist consensus about genetics will not withstand serious scrutiny. In addition to defusing the main anti-reductionist objections, this critical analysis uncovers tell-tale signs of a significant reduction in progress. It also identifies philosophical issues relevant to gaining a better understanding of (...)
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  • The Pragmatics of Explanation.Bas van Fraassen - 2002 - In Yuri Balashov & Alexander Rosenberg (eds.), Philosophy of Science: Contemporary Readings. Routledge. pp. 56.
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  • The Concept of the Gene in Development and Evolution.Raphael Falk & Hans-Jorg Rheinberger - 2001 - Journal of the History of Biology 34 (2):406-407.
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  • Form and Order in Evolutionary Biology: Stuart Kauffman's Transformation of Theoretical Biology.Richard M. Burian & Robert C. Richardson - 1990 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1990:267 - 287.
    The formal framework of Kauffman (1991) depicts the constraints of self-organization on the evolution of complex systems and the relation of self-organization to selection. We discuss his treatment of 'generic constraints' as sources of order (section 2) and the relation between adaptation and organization (section 3). We then raise a number of issues, including the role of adaptation in explaining order (section 4) and the limitations of formal approaches in explaining the distinctively biological (section 5). The principal question we pose (...)
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  • The Structure of Science: Problems in the Logic of Scientific Explanation.Ernest Nagel - 1962 - Philosophy 37 (142):372-374.
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  • Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - British Journal for the Philosophy of Science 46 (4):621-623.
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  • Images of Development. Environmental Causes in Ontogeny.Cor van der Weele - 1996 - Tijdschrift Voor Filosofie 58 (3):608-608.
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  • Discovering Complexity.William Bechtel, Robert C. Richardson & Scott A. Kleiner - 1996 - History and Philosophy of the Life Sciences 18 (3):363-382.
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  • Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - Journal of the History of Biology 28 (1):172-174.
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  • The Structure of Science: Problems in the Logic of Scientific Explanation.Ernest Nagel - 1981 - Science and Society 45 (4):475-480.
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  • Genetics and Reductionism.Sahotra Sarkar - 2000 - Philosophical Quarterly 50 (198):128-130.
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