Los conceptos de evolución y cambio evolutivo son a la vez laxos y polisémicos: se aplican a fenómenos muy diferentes y no siempre se definen con precisión. La aplicación extendida del paradigma neo-darwinista clásico, además, suele imponer un esquema adaptacionista al análisis de los hechos evolutivos, en el cual las funciones juegan un papel lógicamente anterior a los rasgos y sus formas. En este artículo proponemos, como etapa previa a la formulación de hipótesis sobre las causas del cambio, un modelo (...) de espacio forma-función que pueda responder a preguntas como cuándo se da un cambio en los rasgos de una arquitectura biológica y de qué tipo son estos cambios. Un modelo de este tipo nos permite ver claramente cuándo se da un cambio en la forma o en la función y qué alcance evolutivo tiene. (shrink)

It has become customary to conceptualize the living cell as an intricate piece of machinery, different to a man-made machine only in terms of its superior complexity. This familiar understanding grounds the conviction that a cell's organization can be explained reductionistically, as well as the idea that its molecular pathways can be construed as deterministic circuits. The machine conception of the cell owes a great deal of its success to the methods traditionally used in molecular biology. However, the recent introduction (...) of novel experimental techniques capable of tracking individual molecules within cells in real time is leading to the rapid accumulation of data that are inconsistent with an engineering view of the cell. This paper examines four major domains of current research in which the challenges to the machine conception of the cell are particularly pronounced: cellular architecture, protein complexes, intracellular transport, and cellular behaviour. It argues that a new theoretical understanding of the cell is emerging from the study of these phenomena which emphasizes the dynamic, self-organizing nature of its constitution, the fluidity and plasticity of its components, and the stochasticity and non-linearity of its underlying processes. (shrink)

Complexity theory attempts to explain, at the most general possible level, the interesting behaviors of complex systems. Two such behaviors are the emergence of simple or stable high-level behavior from relatively complex low-level behavior, and the emergence of sophisticated high-level behavior from relatively simple low-level behavior; they are often found nested in the same system. Concerning the emergence of simplicity, this essay examines Herbert Simon's explanation from near-decomposability and a stochastic explanation that generalizes the approach of statistical physics. A more (...) general notion of an abstract difference-making structure is introduced with examples, and a discussion of evolvability follows. Concerning the emergence of sophistication, this essay focuses on, first, the energetics approach associated with dissipative structures and the fourth law of thermodynamics, and second, the notion of a complex adaptive system. (shrink)

The 1981 Dahlem conference was a catalyst for contemporary evolutionary developmental biology (Evo-devo). This introductory chapter rehearses some of the details of the history surrounding the original conference and its associated edited volume, explicates the philosophical problem of conceptual change that provided the rationale for a workshop devoted to evaluating the epistemic revisions and transformations that occurred in the interim, explores conceptual change with respect to the concept of evolutionary novelty, and highlights some of the themes and patterns in the (...) different contributions to the present volume, Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development. (shrink)

Evo-Devo exhibits a plurality of scientific “cultures” of practice and theory. When are the cultures acting—individually or collectively—in ways that actually move research forward, empirically, theoretically, and ethically? When do they become imperialistic, in the sense of excluding and subordinating other cultures? This chapter identifies six cultures – three /styles/ (mathematical modeling, mechanism, and history) and three /paradigms/ (adaptationism, structuralism, and cladism). The key assumptions standing behind, under, or within each of these cultures are explored. Characterizing the internal structure of (...) the cultures is necessary for understanding how they collaborate or compete, and how they are fragmented or integrated, in the rich interdisciplinary /trading zone/ (Galison 1997) of Evo-Devo. Evo-Devo is an important example of how science can progress through a radical plurality of perspectives and cultures. (shrink)

Radboud Universiteit Nijmegen, 06 september 2010.

A systematic theory of naturalism, bridging metaphysics and the science of complexity and emergence.

what is the ontology of planets?Our access point to this question is the ontology of planet Earth. Although the presence of life marks planet Earth as special among other planets, Earth shares a basic commonality with them – namely, its material existence. We take this commonality as a point of departure for our reflections on the ontology of both planet Earth and other planets. In this chapter, we ask for the ontology of this materiality of planets. We consult the ontology (...) of planet Earth as I developed it in an earlier contribution (Blok, 2019), explore the ontology of planets as absolute boundary of the natural habitats on Earth, and reflect on the opportunities and limitations such ontology provides for future human colonies on other planets. (shrink)

Nature essentially consists of complex systems. The paper presents a conceptual framework to understand how complex systems interact with each other in nature. All natural systems are thermodynamically open and physically adaptive. The process of adaptation and continual self-organization cause these systems to interact continuously with the environment and compete against such similar systems for limited resources.

We trace the history of the Modern Evolutionary Synthesis, and of genetic Darwinism generally, with a view to showing why, even in its current versions, it can no longer serve as a general framework for evolutionary theory. The main reason is empirical. Genetical Darwinism cannot accommodate the role of development (and of genes in development) in many evolutionary processes. We go on to discuss two conceptual issues: whether natural selection can be the “creative factor” in a new, more general framework (...) for evolutionary theorizing; and whether in such a framework organisms must be conceived as self-organizing systems embedded in self-organizing ecological systems. (shrink)

We give in this paper indications about the dynamical impact coming from the main sources of perturbation in biological regulatory networks. First, we define the boundary of the interaction graph expressing the regulations between the main elements of the network . Then, we search what changes in the state values on the boundary could cause some changes of states in the core of the system . After, we analyse the role of the mode of updating on the asymptotics of the (...) network, essentially on the occurrence of limit cycles . Finally, we show the influence of some topological changes on the dynamical behaviour of the system. (shrink)

At the heart of evolutionary theory lays the notion of replication. Unfortunately, this notion is far less exact than the weight of its importance. In this paper, it is argued that replication always involves coding. Furthermore, when a theory of evolution is built on replication based on coding, a unifying and coherent picture arises that sheds new light on some of the controversies and open questions in contemporary biology, such as what are the roles of phylogeny and ontogeny in evolution, (...) and how to characterize and explain the increase of biological complexity. (shrink)

While a great deal of abuse has been directed at intelligent design theory (ID), its starting point is a fact about biological organisms that cries out for explanation, namely "specified complexity" (SC). Advocates of ID deploy three kind of argument from specified complexity to the existence of a designer: an eliminative argument, an inductive argument, and an inference to the best explanation. Only the first of these merits the abuse directed at it; the other two arguments are worthy of respect. (...) If they fail, it is only because we have a better explanation of SC, namely Darwin's theory of evolution by natural selection. (shrink)

This article reviews the seven “visions” of evolution proposed by Depew and Weber , concluding that each posited relationship between natural selection and self-organization has suited different aims and approaches. In the second section of the article, we show that these seven viewpoints may be collapsed into three fundamentally different ones: natural selection drives evolution; self-organization drives evolution; and natural selection and self-organization are complementary aspects of the evolutionary process. We then argue that these three approaches are not mutually exclusive, (...) since each may apply to different stages of development of different systems. What emerges from our discussion is a more encompassing view: that self-organization proposes what natural selection disposes. (shrink)

The aim of this paper is to clarify and critically assess the methods of evolutionary psychology, and offer a sketch of an alternative methodology. My thesis is threefold. (1) The methods of inquiry unique to evolutionary psychology rest upon the claim that the discovery of theadaptive functions of ancestral psychological capacities leads to the discovery of thepsychological functions of those ancestral capacities. (2) But this claim is false; in fact, just the opposite is true. We first must discover the psychological (...) functions of our psychological capacities in order to discover their adaptive functions. Hence the methods distinctive of evolutionary psychology are idle in our search for the mechanisms of the mind. (3) There are good reasons for preferring an alternative to the methods of evolutionary psychology, an alternative that aims to discover the functions of our psychological capacities by appeal to the concept of awhole psychology. (shrink)

A debate over the possibilities for foundations of knowledge has been a key feature of theoretical discussions in the discipline of International Relations. A number of recent contributions suggest that this debate is still active. This article offers a contribution to this debate by suggesting that the study of complexity may provide a contingent foundation for the study of international relations. We examine the grounds on which such a claim might be made, and examine the implications for taking complexity as (...) a foundational claim. (shrink)

The pivotal problem of comorbidity research lies in the psychometric foundation it rests on, that is, latent variable theory, in which a mental disorder is viewed as a latent variable that causes a constellation of symptoms. From this perspective, comorbidity is a (bi)directional relationship between multiple latent variables. We argue that such a latent variable perspective encounters serious problems in the study of comorbidity, and offer a radically different conceptualization in terms of a network approach, where comorbidity is hypothesized to (...) arise from direct relations between symptoms of multiple disorders. We propose a method to visualize comorbidity networks and, based on an empirical network for major depression and generalized anxiety, we argue that this approach generates realistic hypotheses about pathways to comorbidity, overlapping symptoms, and diagnostic boundaries, that are not naturally accommodated by latent variable models: Some pathways to comorbidity through the symptom space are more likely than others; those pathways generally have the same direction (i.e., from symptoms of one disorder to symptoms of the other); overlapping symptoms play an important role in comorbidity; and boundaries between diagnostic categories are necessarily fuzzy. (shrink)

Despite its current popularity, “emergence” is a concept with a venerable history and an elusive, ambiguous standing in contemporary evolutionary theory. This paper briefly recounts the history of the term and details some of its current usages. Not only are there radically varying interpretations about how to define emergence but “reductionist” and “holistic” theorists hold very different views about the issue of causation. However, these two seemingly polar positions are not irreconcilable. Reductionism, or detailed analysis of the parts and their (...) interactions, is essential for answering the “how” question in evolution—how does a complex living system work? But holism is equally necessary for answering the “why” question—why did a particular arrangement of parts evolve? In order to answer the “why” question, a broader, multi-leveled paradigm is required. The reductionist approach to explaining emergent complexity has entailed a search for underlying “laws of emergence.” In contrast, the “Synergism Hypothesis” focuses on the “economics”—the functional effects produced by emergent wholes and their selective consequences in evolutionary change. This paper also argues that emergent phenomena represent, in effect, a subset of a larger universe of cooperative, synergistic effects in the natural world. (shrink)

This paper investigates Hegel’s account of the animal organism as it is presented in the Philosophy of Nature, with a special focus on its normative implications. I argue that the notion of “organisation” is fundamental to Hegel’s theory of animal normativity. The paper starts by showing how a Hegelian approach takes up the scientific image of organism and assigns a basic explanatory role to the notion of “organisation” in its understanding living beings. Moving from this premise, the paper turns to (...) the group of accounts in contemporary theoretical biology known as “organisational accounts”, which offer a widely debated strategy for naturalizing teleology and normativity in organisms. As recent scholarship recognizes, these accounts explicitly rely on insights from Kant and Post-Kantianism. I make the historical and conceptual argument that Hegel’s view of the organism shares several basic commitments with OAs, especially regarding the notion of “organisational closure”. I assess the account of normativity that such accounts advance and its implications for how we approach Hegel. Finally, I argue that the notion of “organisation” is more fundamental to Hegel’s theory of animal normativity than the Aristotelian notion of “Gattung” or “species”, which by contrast appears derivative – at least in the Philosophy of Nature and the Lectures – and does not play the central role in his account maintained by some scholars. (shrink)

The philosophy of Hedwig Conrad-Martius represents a very important intersection point between phenomenological research and the natural sciences in the twentieth century. She tried to open a common pattern from the ontology of the physical being up to anthropology, passing from the biological sciences. An intersection point that, for the particular features of her thought, is rather a perspective point from which to observe, in an interesting and original way, both natural sciences and phenomenology. The 1923 essay entitled Real Ontology (...) (Conrad-Martius 1923) is the starting point for her reflections about science, but it is also the point that marks a separation from Husserl (for a detailed discussion, see: Ales Bello 2003, pp. 184–195), even if not from phenomenology. A fundamental question is faced: “why something instead of nothing?” or: “what is the reality?,” shifting the focus from essence to existence. Whichever the answer, a deeply realistic position must be assumed, based on the assumption of a clear distinction between the subject and the world, and the possibility of knowledge, intended as adaequatio of the subject’s intellectus to the external reality. (shrink)

Organisms live not as discrete entities on which an independent environment acts, but as members of a reproductive lineage in an ongoing series of interactions between that lineage and a dynamic ecological niche. These interactions continuously shape both systems in a reciprocal manner, resulting in the emergence of reliably co-occurring configurations within and between both systems. The enactive approach to cognition describes this relationship as the structural coupling between an organism and its environment; similarly, Developmental Systems Theory emphasizes the reciprocal (...) nature of structurally coupled systems in its analysis of organisms as developmental processes embedded within a developmental system. Through an enactive-developmental systems framing, this paper identifies the organizational features of cognizing systems in order to motivate a picture of how organism and environment co-determine and co-construct one another. I argue that organisms can be characterized as self-organizing, operationally closed, plastic systems ecologically embedded within a developmental system. In virtue of this organizational makeup, organisms actively engage in the modulation and assessment of their coupling with their environment: cognitive strategies that entail contextualized responses to variations across the web of interactions that comprises the developmental system. (shrink)

According to the free energy principle, life is an “inevitable and emergent property of any random dynamical system at non-equilibrium steady state that possesses a Markov blanket” :20130475, 2013). Formulating a principle for the life sciences in terms of concepts from statistical physics, such as random dynamical system, non-equilibrium steady state and ergodicity, places substantial constraints on the theoretical and empirical study of biological systems. Thus far, however, the physics foundations of the free energy principle have received hardly any attention. (...) Here, we start to fill this gap and analyse some of the challenges raised by applications of statistical physics for modelling biological targets. Based on our analysis, we conclude that model-building grounded in the free energy principle exacerbates a trade-off between generality and realism, because of a fundamental mismatch between its physics assumptions and the properties of actual biological targets. (shrink)

The paper considers our ordinary mentalistic discourse in relation to what we should expect from any genuine science of the mind. A meta-scientific eliminativism is commended and distinguished from the more familiar eliminativism of Skinner and the Churchlands. Meta-scientific eliminativism views folk psychology qua folksy as unsuited to offer insight into the structure of cognition, although it might otherwise be indispensable for our social commerce and self-understanding. This position flows from a general thesis that scientific advance is marked by an (...) eschewal of folk understanding. The latter half of the paper argues that, contrary to the received view, Chomsky's review of Skinner offers not just an argument against Skinner's eliminativism, but, more centrally, one in favour of the second eliminativism. (shrink)

Recent work in biology and cognitive science depicts a variety of target phenomena as the products of a tangled web of causal influences. Such influences may include both internal and external factors as well as complex patterns of reciprocal causal interaction. Such twisted tales are sometimes seen as a threat to explanatory strategies that invoke notions such as inner programs, genes for and sometimes even internal representations. But the threat, I shall argue, is more apparent than real. Complex causal influence, (...) in and of itself, provides no good reason to reject these familiar explanatory notions. To believe otherwise, I suggest, is generally to commit (at least) one of two seductive errors. The first error is to think that the general notion of a state x coding for an outcome y involves the state's constituting a full description of y. This is what I call the myth of the self-contained code. The second error is to think that the practice of treating certain factors as special (e.g., seeing genes as coding for outcomes in a way environmental factors do not) depends on the (often mistaken) belief that the singled out factor is somehow doing the most real work. Where the amounts of causal influence are evenly spread, it is assumed there can be no reason to treat one factor in a special way. This is what I term the Myth of Explanatory Equality. Avoiding these errors involves reminding ourselves of (1) the rich context-dependence of even standard, unproblematic uses of the notions of code, program and information content (all three make sense only relative to an assumed ecological backdrop) and (2) the difference between explaining why an event occurred and displaying the full workings of a complex causal system. (shrink)

In 1895 in the Project for a Scientific Psychology Freud tried to integrate psychology and neurology in order to develop a neuroscientific psychology. Since 1880 Freud made no distinction between psychology and physiology. His papers from the end of the 1880s to1890 were very clear on this scientific overlap: as with many of its contemporaries, Freud thought about psychology essentially as the physiology of the brain. Years later he had to surrender, realizing a technological delay, not capable to pursue its (...) ambitious aim, and until that moment psychoanalysis would have to use its more suitable clinical method. Also, he seemed skeptical about the phrenology drift, typical of that time, in which any psychological function needed to be located in its neuroanatomical area. He could not see the progresses of neurosciences and its fruitful dialogue with psychoanalysis, occurred also thanks to the improvements in the field of neuroimaging, which has made possible a remarkable advance in the knowledge of the mind-brain system and a better observation of the psychoanalytical theories. After years of investigations, deriving from research and clinical work of the last century, the discovery of neural networks, together with the free energy principle, we are observing under a new light the psychodynamic neuroscience in its exploration of the mind-brain system. In this narrative review we summarize the important developments of the psychodynamic neuroscience, with particular regard to the free energy principle, the resting state networks, especially the Default Mode Network in its link with the Self; finally we suggest a discussion by approaching the concept of Alpha Function, proposed by the psychoanalyst Wilfred Ruprecht Bion, trying to speculate about the connection with neuroscience. (shrink)

Wayne D. Christensen and Cliff A. Hooker.

It is widely assumed that human learning and the structure of human languages are intimately related. This relationship is frequently suggested to derive from a language-specific biological endowment, which encodes universal, but communicatively arbitrary, principles of language structure (a Universal Grammar or UG). How might such a UG have evolved? We argue that UG could not have arisen either by biological adaptation or non-adaptationist genetic processes, resulting in a logical problem of language evolution. Specifically, as the processes of language change (...) are much more rapid than processes of genetic change, language constitutes a both over time and across different human populations, and, hence, cannot provide a stable environment to which language genes could have adapted. We conclude that a biologically determined UG is not evolutionarily viable. Instead, the original motivation for UG arises because language has been shaped to fit the human brain, rather than vice versa. Following Darwin, we view language itself as a complex and interdependent which evolves under selectional pressures from human learning and processing mechanisms. That is, languages themselves are shaped by severe selectional pressure from each generation of language users and learners. This suggests that apparently arbitrary aspects of linguistic structure may result from general learning and processing biases deriving from the structure of thought processes, perceptuo-motor factors, cognitive limitations, and pragmatics. (shrink)

Our target article argued that a genetically specified Universal Grammar (UG), capturing arbitrary properties of languages, is not tenable on evolutionary grounds, and that the close fit between language and language learners arises because language is shaped by the brain, rather than the reverse. Few commentaries defend a genetically specified UG. Some commentators argue that we underestimate the importance of processes of cultural transmission; some propose additional cognitive and brain mechanisms that may constrain language and perhaps differentiate humans from nonhuman (...) primates; and others argue that we overstate or understate the case against co-evolution of language genes. In engaging with these issues, we suggest that a new synthesis concerning the relationship between brains, genes, and language may be emerging. (shrink)

We have demonstrated, using the Cantor dust method, that the statistical distribution of appearance and disappearance of rodents species (Arvicolid rodent radiation in Europe) follows power laws strengthening the evidence for a fractal structure set. Self-similar laws have been used as model for the description of a huge number of biological systems. With Nottale we have shown that log-periodic behaviors of acceleration or deceleration can be applied to branching macroevolution, to the time sequences of major evolutionary leaps (global life tree, (...) sauropod and theropod dinosaurs postural structures, North American fossil equids, rodents, primates and echinoderms clades and human ontogeny). The Scale-Relativity Theory has others biological applications from linear with fractal behavior to non-linear and from classical mechanics to quantum mechanics. (shrink)

The cumulative open-endedness of human cultures represents a major break with the social traditions of nonhuman species. As traditions are altered and the modifications retained along the cultural lineage, human populations are capable of producing complex traits that no individual could have figured out on its own. For cultures to produce increasingly complex traditions, improvements and modifications must be kept for the next generations to build upon. High-fidelity transmission would thus act as a ratchet, retaining modifications and allowing the historical (...) buildup of complex traditions. Mechanisms acting against slippage are important, of course, but cultures also need to move forward for the ratchet to retain anything important. In this article, I argue that studies of modification-generating processes and the many ways they shape cumulative culture have been overlooked. Key to a better understanding of cultural modification processes is taking seriously that cultural traditions consist of complex, hierarchically structured recipes. Taking such structures seriously and assessing the different ways they can vary in cultural design space, a novel picture for the onset of cumulative cultural evolution emerges. I argue that a possible impediment for cumulative culture in nonhuman animals may in fact reside not so much in the fidelity of their social transmission but rather in the constraints, internal and external, on their capacity to modify complex, hierarchically structured cultural recipes. (shrink)

No evidence exists that the accidental origin of life is too improbable to have occurred naturally, but there are numerous attempts to argue so. Dizzying statistics are cited to show that a god had to be responsible. This paper identifies the Argument from Biogenesis, then explains why all these arguments so far fail, and what would actually have to be done to make such an argument succeed. Describes seven general types of error, with examples. Includes a table of forty-seven statistics (...) used by over twenty authors to date. (shrink)

The modern social world is unjust. It is also complex. What does this latter fact imply about the kind of approach that should be used in ameliorating the injustice expressed in the former fact? One answer, recently put forth by Jacob Barrett, is that _ideal theory_, which he understands as being fundamentally defined by the identification and subsequent pursuit of an aspirational macro-level institutional goal, lacks a place in social reform. The reason he thinks ideal theory lacks a place has (...) to do with its inability to deal with complexity. _Pace_ Barrett, I argue that ideal theory, suitably understood, can play a valuable role in social reform in a complex world. While some ideal theorists have underappreciated the extent to which complexity considerations complicate social reform, this does not mean that there is no place for it. This paper surveys the resources ideal theory has available to cope with what I call _the challenge of complexity_. Although the coping techniques will be successful to varying degrees, I believe, in aggregate, a compelling case can be made that ideal theory can combat the challenge of complexity. Still, one may worry that even if ideal theory can adequately deal with complexity, it cannot adequately deal with ever-changing social circumstances. Call this _the dancing landscape objection_. A static ideal theory cannot overcome it, but a _dynamic ideal theory_ could. In sum, dynamic ideal theory can contribute to social reform in a complex and mutable social world. (shrink)

The basic premise of biosemiotics as a discipline is that there are elementary processes linking signifying strategies in all forms of animate life. Correspondingly, the discoveries of biosemiotics should, in principle, be capable of revealing new insights about human signification. In the present article, I show that this is in fact the case by constructing a biosemiotic model that links advertising strategies with corresponding structures in animal predation. The methodological framework for this model is the catastrophe theory of René Thom. (...) The end result is a revised understanding of an ostensibly cultural phenomenon that demonstrates its continuity with signalling processes conventionally associated with the natural world. (shrink)

This is the second of two articles in which I reflect on “generalized Darwinism” as currently discussed in evolutionary economics. In the companion article (Callebaut, Biol Theory 6. doi: 10.1007/s13752-013-0086-2, 2011, this issue) I approached evolutionary economics from the naturalistic perspectives of evolutionary epistemology and the philosophy of biology, contrasted evolutionary economists’ cautious generalizations of Darwinism with “imperialistic” proposals to unify the behavioral sciences, and discussed the continued resistance to biological ideas in the social sciences. Here I assess Generalized Darwinism (...) as propounded by Geoffrey Hodgson, Thorbjørn Knudsen, and others, concentrating on the roles of theory and model building in science (and the roles of analogy and metaphor therein), generative replication, and the relation between selection and self-organization. I then point to advances in current biology that promise to be more fruitful as sources of inspiration for evolutionary economics than the project to generalize Darwinism in its current, “hardened Modern Synthesis” form; and I draw some conclusions. (shrink)

According to Pigliucci and Kaplan, there is a revolution underway in how we understand fitness landscapes. Recent models suggest that a perennial problem in these landscapes—how to get from one peak across a fitness valley to another peak—is, in fact, non-existent. In this paper I assess the structure and the extent of Pigliucci and Kaplan’s proposed revolution and argue for two points. First, I provide an alternative interpretation of what underwrites this revolution, motivated by some recent work on model-based science. (...) Second, I show that the implications of this revolution need to carefully assessed depending on question being asked, for peak-shifting is not central to all evolutionary questions that fitness landscapes have been used to explore. (shrink)

The aim of this article is to elucidate the notions of explanation and mechanism, in particular of the social kind. A mechanism is defined as what makes a concrete system tick, and it is argued that to propose an explanation proper is to exhibit a lawful mechanism. The so-called covering law model is shown to exhibit only the logical aspect of explanation: it just subsumes particulars under universals. A full or mechanismic explanation involves mechanismic law statements, not purely descriptive ones (...) such as functional relations and rate equations. Many examples from the natural, biosocial, and social sciences are examined. In particular, macro-micro-micro-macro social relations are shown to explain other wise puzzling macro-macro links. The last part of the article relates the author's progress, over half a century, toward understanding mechanism and explanation. (shrink)

Architectural design is typically limited by the constraints imposed by physical space. If and when opportunities to attenuate or extinguish these limits arise, should they be seized? Here it is argued that the limiting influence of spatial embedding should not be regarded as a frustrating tyranny to be escaped wherever possible, but as a welcome enabling constraint to be leveraged. Examples from the natural world are presented, and an appeal is made to some recent results on complex systems and measures (...) of interaction complexity. (shrink)

Phylogeography involves the analysis of gene genealogies in a spatial context, to infer the historical processes that have shaped the current population structure and distribution of organisms. The field has expanded rapidly in the last three decades, triggered by important technical and methodological advances. However, these technical improvements have not been paralleled by major changes in theoretical paradigms. I suggest that phylogeographic techniques are underutilized, and that adopting an organismal, integrative, and iterative research program in phylogeography will reinforce the explanatory (...) power of the discipline. (shrink)

The primary method by which science endeavors to order the world is the analytic approach, consistent with Cartesian principles of dividing the problem in as many sections as required for an optimal solution, and progressing from the simplest to the most complex reasoning. When the interactions among the various elements of the system being studied are minimal, such a procedure indeed makes it possible to formulate laws that describe chains of causality. However, when the variables are interdependent and linked by (...) non-linear equations, the atomistic method cannot account for the phenomenon in its entirety. Spurred by this inadequacy, scientists sought to discover synthetic methods which, early in the twentieth century, led to the conceptualization of holistic theories in a number of disciplines. The most highly developed fields are the psychology of form, structural anthropology (1), and the various systems theories (2). More recently, the development of epigenetic concepts in biology has corresponded to the appearance of different theories of pattern in physics and mathematics (3, 4) and to the progressive emergence of the concept of self-organization (5, 6, 7). The objective is to explain the production of complex structures on the basis of interacting elements, none of which contains a guiding scheme that dictates these structures. In biology, the challenge is to locate the constraints that are expressed in a space of possibilities (8) in order to develop a theory of organization that is capable of predicting the finite number of forms that living creatures can assume (9). This school of thought can be described as structuralist, emergentist, self-organizational, or epigeneticist, depending on the theoretical version that is emphasized. (shrink)