Results for 'Brandon Smith'

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  1. Spinoza’s Strong Eudaimonism.Brandon Smith - 2023 - Journal of Modern Philosophy 5 (3):1-21.
    In this paper I defend an eudaimonistic reading of Spinoza’s ethical philosophy. Eudaimonism refers to the mainstream ethical tradition of the ancient Greeks, which considers happiness a naturalistic, stable, and exclusively intrinsic good. Within this tradition, we can also draw a distinction between weak eudaimonists and strong eudaimonists. Weak eudaimonists do not ground their ethical conceptions of happiness in complete theories of metaphysics, epistemology, or psychology. Strong eudaimonists, conversely, build their conceptions of happiness around an overall philosophical system that extends (...)
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  2. Spinoza’s metaethical synthesis of nature and affect.Brandon Smith - 2022 - Ithaque 30:89-112.
    In this essay, I evaluate four central metaethical readings of Spinoza’s moral philosophy in the literature: unqualified anti-realism, qualified anti-realism, qualified realism, and unqualified realism. More specifically, I discuss the metaethical readings of Charles Jarrett (unqualified anti-realism), Matthew Kisner (qualified anti-realism), Jon Miller (qualified realism), and Andrew Youpa (unqualified realism), each of which captures core aspects of this debate. My conclusions are that (1) Spinoza is neither an unqualified anti-realist nor an unqualified realist and (2) Spinoza’s ethical framework represents a (...)
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  3. Children hold owners responsible when property causes harm.Celina K. Bowman-Smith, Brandon W. Goulding & Ori Friedman - 2018 - Journal of Experimental Psychology: General 147 (8):1191-1199.
    Since ancient times, legal systems have held owners responsible for harm caused by their property. Across 4 experiments, we show that children aged 3–7 also hold owners responsible for such harm. Older children judge that owners should repair harm caused by property, and younger children may do this as well. Younger and older children judge that owners should apologize for harm, even when children do not believe the owners allowed the harm to occur. Children are also as likely to hold (...)
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  4. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  5. Frantz Fanon's Engagement With Hegel's Master-Slave Dialectic.Brandon Hogan - 2018 - Africology: The Journal of Pan African Studies 11 (8):16-32.
    This article seeks to articulate an interpretation of Fanon’s engagement with G.W.F. Hegel that does not either assume that Fanon rejects Hegel’s normative conclusions or that Fanon’s engagement is incidental to his larger philosophical projects. I argue that Fanon’s take on the master-slave dialectic allows us to better understand the normative claims that undergird Fanon’s calls for violence and revolution in Black Skin, The Wretched of the Earth, and A Dying Colonialism.
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  6. Eternal Life as Knowledge of God: An Epistemology of Knowledge by Acquaintance and Spiritual Formation.Brandon L. Rickabaugh - 2013 - Journal of Spiritual Formation and Soul Care 6 (2):204-228.
    Spiritual formation currently lacks a robust epistemology. Christian theology and philosophy often spend more time devoted to an epistemology of propositions rather than an epistemology of knowing persons. This paper is an attempt to move toward a more robust account of knowing persons in general and God in particular. After working through various aspects of the nature of this type of knowledge this theory is applied to specific issues germane to spiritual formation, such as the justification of understanding spiritual growth (...)
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  7. The development of territory-based inferences of ownership.Brandon W. Goulding & Ori Friedman - 2018 - Cognition 177 (C):142-149.
    Legal systems often rule that people own objects in their territory. We propose that an early-developing ability to make territory-based inferences of ownership helps children address informational demands presented by ownership. Across 6 experiments (N = 504), we show that these inferences develop between ages 3 and 5 and stem from two aspects of the psychology of ownership. First, we find that a basic ability to infer that people own objects in their territory is already present at age 3 (Experiment (...)
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  8. Moral Responsibility, Forgiveness, and Conversation.Brandon Warmke & Michael McKenna - 2013 - In Ishtiyaque Haji & Justin Caouette (eds.), Free Will and Moral Responsibility. Cambridge Scholars Press. pp. 189-2-11.
    In this paper, we explore how a conversational theory of moral responsibility can provide illuminating resources for building a theory about the nature and norms of moral forgiveness.
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  9. Emotion as High-level Perception.Brandon Yip - 2021 - Synthese 199 (3-4):7181-7201.
    According to the perceptual theory of emotions, emotions are perceptions of evaluative properties. The account has recently faced a barrage of criticism recently by critics who point out varies disanalogies between emotion and paradigmatic perceptual experiences. What many theorists fail to note however, is that many of the disanalogies that have been raised to exclude emotions from being perceptual states that represent evaluative properties have also been used to exclude high-level properties from appearing in the content of perception. This suggests (...)
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  10. The Economic Model of Forgiveness.Brandon Warmke - 2014 - Pacific Philosophical Quarterly 97 (4):570-589.
    It is sometimes claimed that forgiveness involves the cancellation of a moral debt. This way of speaking about forgiveness exploits an analogy between moral forgiveness and economic debt-cancellation. Call the view that moral forgiveness is like economic debt-cancellation the Economic Model of Forgiveness. In this article I articulate and motivate the model, defend it against some recent objections, and pose a new puzzle for this way of thinking about forgiveness.
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  11. Widening Access to Applied Machine Learning With TinyML.Vijay Reddi, Brian Plancher, Susan Kennedy, Laurence Moroney, Pete Warden, Lara Suzuki, Anant Agarwal, Colby Banbury, Massimo Banzi, Matthew Bennett, Benjamin Brown, Sharad Chitlangia, Radhika Ghosal, Sarah Grafman, Rupert Jaeger, Srivatsan Krishnan, Maximilian Lam, Daniel Leiker, Cara Mann, Mark Mazumder, Dominic Pajak, Dhilan Ramaprasad, J. Evan Smith, Matthew Stewart & Dustin Tingley - 2022 - Harvard Data Science Review 4 (1).
    Broadening access to both computational and educational resources is crit- ical to diffusing machine learning (ML) innovation. However, today, most ML resources and experts are siloed in a few countries and organizations. In this article, we describe our pedagogical approach to increasing access to applied ML through a massive open online course (MOOC) on Tiny Machine Learning (TinyML). We suggest that TinyML, applied ML on resource-constrained embedded devices, is an attractive means to widen access because TinyML leverages low-cost and globally (...)
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  12. Is Forgiveness the Deliberate Refusal to Punish?Brandon Warmke - 2011 - Journal of Moral Philosophy 8 (4):613-620.
    In his paper, “The Paradox of Forgiveness“ (this Journal 6 (2009), p. 365-393), Leo Zaibert defends the novel and interesting claim that to forgive is deliberately to refuse to punish. I argue that this is mistaken.
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  13. Emotions as modulators of desire.Brandon Yip - 2021 - Philosophical Studies 179 (3):855-878.
    We commonly appeal to emotions to explain human behaviour: we seek comfort out of grief, we threaten someone in anger and we hide in fear. According to the standard Humean analysis, intentional action is always explained with reference to a belief-desire pair. According to recent consensus, however, emotions have independent motivating force apart from beliefs and desires, and supplant them when explaining emotional action. In this paper I provide a systematic framework for thinking about the motivational structure of emotion and (...)
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  14. Worship and Veneration.Brandon Warmke & Craig Warmke - forthcoming - In Aaron Segal & Samuel Lebens (eds.), The Philosophy of Worship: Divine and Human Aspects. Cambridge University Press.
    Various strands of religious thought distinguish veneration from worship. According to these traditions, believers ought to worship God alone. To worship anything else, they say, is idolatry. And yet many of these same believers also claim to venerate—but not worship—saints, angels, images, relics, tombs, and even each other. But what's the difference? Tim Bayne and Yujin Nagasawa (2006: 302) are correct that “it seems to be extremely difficult to distinguish veneration from worship.” Many have argued throughout history that veneration collapses (...)
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  15. Articulate forgiveness and normative constraints.Brandon Warmke - 2015 - Canadian Journal of Philosophy 45 (4):1-25.
    Philosophers writing on forgiveness typically defend the Resentment Theory of Forgiveness, the view that forgiveness is the overcoming of resentment. Rarely is much more said about the nature of resentment or how it is overcome when one forgives. Pamela Hieronymi, however, has advanced detailed accounts both of the nature of resentment and how one overcomes resentment when one forgives. In this paper, I argue that Hieronymi’s account of the nature of forgiveness is committed to two implausible claims about the norms (...)
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  16. "It is of the nature of reason to regard things as necessary, not as contingent": A Defense of Spinoza's Necessitarianism.Brandon Rdzak - 2021 - Dissertation, Purdue University
    There is longstanding interpretive dispute between commentators over Spinoza’s commitment to necessitarianism, the doctrine that all things are metaphysically necessary and none are contingent. Those who affirm Spinoza’s commitment to the doctrine adhere to the necessitarian interpretation whereas those who deny it adhere to what I call the semi-necessitarian interpretation. As things stand, the disagreement between commentators appears to have reached an impasse. Notwithstanding, there seems to be no disagreement among commentators on the question of necessitarianism’s philosophical plausibility as a (...)
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  17. Responding to N.T. Wright's Rejection of the Soul.Brandon L. Rickabaugh - 2018 - Heythrop Journal 59 (2):201-220.
    At a 2011 meeting of the Society of Christian Philosophers, N. T. Wright offered four reasons for rejecting the existence of soul. This was surprising, as many Christian philosophers had previously taken Wright's defense of a disembodied intermediate state as a defense of a substance dualist view of the soul. In this paper, I offer responses to each of Wright's objections, demonstrating that Wright's arguments fail to undermine substance dualism. In so doing, I expose how popular arguments against dualism fail, (...)
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  18. Rahner and the Cross: What Kind of Atoning Story Does He Tell?Brandon R. Peterson - 2021 - Philosophy and Theology 33 (1&2):113-137.
    Classically, Christians have professed the saving efficacy of the cross. Does Karl Rahner? Recent commentary on Foundations of Christian Faith has described Rahner as conflating “atonement” generally with penal substitutionary theories of a changing God, as ruling out the redemptive significance of Christ’s death, and as denigrating the normativity of Scripture in order to do so. This article responds to these claims, unfolding Rahner’s soteriology and arguing that he advances a theology of the cross which affirms its saving efficacy, including (...)
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  19. Against Emergent Dualism.Brandon L. Rickabaugh - 2018 - In Jonathan J. Loose, Angus John Louis Menuge & J. P. Moreland (eds.), The Blackwell Companion to Substance Dualism. Oxford, U.K.: Wiley-Blackwell. pp. 73-86.
    Emergent substance dualism is explained in detail and several criticisms are raised against the view.
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  20. Correcting Acedia through Gratitude and Wonder.Brandon Dahm - 2021 - Religions 458 (12):1-15.
    In the capital vices tradition, acedia was fought through perseverance and manual labor. In this paper, I argue that we can also fight acedia through practicing wonder and gratitude. I show this through an account of moral formation developed out of the insight of the virtues and vices traditions that character traits affect how we see things. In the first section, I use Robert Roberts’s account of emotions to explain a mechanism by which virtues and vices affect vision and thus (...)
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  21. The Transformation of Emotion: First and Third Person Perspectives in Developmental Context.Brandon Yip - 2021 - Australasian Philosophical Review 5 (4):389-395.
    Shun argues that the distinction made between emotions experienced from the first-person perspective and those from the third-person perspective does not capture our everyday emotional experience. My proposal is that even if we accept this claim, first- and third-person perspective taking is still crucial in the development of our emotional psychology. This is so in two respects. First, the features of intimacy and impartiality that mark adult emotional response are a product of a developmental process that involves perspective taking. Second, (...)
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  22. The Argument from Reason, and Mental Causal Drainage: A Reply to van Inwagen.Brandon Rickabaugh & Todd Buras - 2017 - Philosophia Christi 19 (2):381-399.
    According to Peter van Inwagen, C. S. Lewis failed in his attempt to undermine naturalism with his Argument from Reason. According to van Inwagen, Lewis provides no justification for his central premise, that naturalism is inconsistent with holding beliefs for reasons. What is worse, van Inwagen argues that the main premise in Lewis's argument from reason is false. We argue that it is not false. The defender of Lewis's argument can make use of the problem of mental causal drainage, a (...)
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  23. Dismantling Bodily Resurrection Arguments Against Mind-Body Dualism.Brandon Rickabaugh - 2018 - In Loftin R. Keith & Farris Joshua (eds.), Christian Physicalism? Philosophical Theological Criticisms. Lexington. pp. 295-317.
    According to the Christian doctrine of bodily resurrection, human persons will have an embodied existence in eternity. Many Christian materialists, especially Lynne Rudder Baker, Trenton Merricks, and Kevin Corcoran, argue that the doctrine of bodily resurrection creates serious problems for substance dualism (dualism). These critiques argued that bodily resurrection is made trivial by dualism, that dualism makes it difficult if not impossible to explain why we need to be embodied, or that dualism should be rejected as bodily resurrection is better (...)
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  24. The Acquired Virtues are Real Virtues.Brandon Dahm - 2015 - Faith and Philosophy 32 (4):453-470.
    In a recent paper, Eleonore Stump argues that Aquinas thinks the acquired virtues are “not real at all” because they do not contribute to true moral life, which she argues is the life joined to God by the infused virtues and the gifts and fruits of the Holy Spirit. Against this, I argue in two stages that Aquinas thinks the acquired virtues are real virtues. First, I respond to Stump’s four arguments against the reality of the acquired virtues. Second, I (...)
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  25. Toll-like receptor signaling in vertebrates: Testing the integration of protein, complex, and pathway data in the Protein Ontology framework.Cecilia Arighi, Veronica Shamovsky, Anna Maria Masci, Alan Ruttenberg, Barry Smith, Darren Natale, Cathy Wu & Peter D’Eustachio - 2015 - PLoS ONE 10 (4):e0122978.
    The Protein Ontology provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes. Comprehensive curation of experimentally known forms and annotations thereof is expected to expose discrepancies, differences, and gaps in our knowledge. We have annotated the early events of innate immune signaling mediated by Toll-Like Receptor 3 and 4 complexes in human, mouse, and chicken. The resulting ontology and annotation data set has (...)
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  26. Responsibility and Situationism.Brandon Warmke - 2022 - In Dana Kay Nelkin & Derk Pereboom (eds.), The Oxford Handbook of Moral Responsibility. New York: Oxford University Press. pp. 468-493.
    This chapter explores the relationship between an agent’s moral responsibility for their actions and the situations in which an agent acts. Decades of research in psychology are sometimes thought to support situationism, the view that features of an agent’s situation greatly influence their behavior in powerful and surprising ways. Such situational fea­tures might therefore be thought to threaten agents’ abilities to act freely and responsi­bly. This chapter begins by discussing some relevant empirical literature on situationism. It then surveys several ways (...)
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  27. Moral Grandstanding.Justin Tosi & Brandon Warmke - 2016 - Philosophy and Public Affairs 44 (3):197-217.
    Moral grandstanding is a pervasive feature of public discourse. Many of us can likely recognize that we have engaged in grandstanding at one time or another. While there is nothing new about the phenomenon of grandstanding, we think that it has not received the philosophical attention it deserves. In this essay, we provide an account of moral grandstanding as the use of public discourse for moral self-promotion. We then show that our account, with support from some standard theses of social (...)
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  28. Assertion, Stakes and Expected Blameworthiness: An Insensitive Invariantist Solution to the Bank Cases.Brandon Yip - 2020 - Erkenntnis (4):1501-1519.
    Contextualists and Subject Sensitive Invariantists often cite the knowledge norm of assertion as part of their argument. They claim that the knowledge norms in conjunction with our intuitions about when a subject is properly asserting in low or high stakes contexts provides strong evidence that what counts as knowledge depends on practical factors. In this paper, I present new data to suggest they are mistaken in the way they think about cases involving high and low stakes and I show how (...)
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  29. Neuroscience, Spiritual Formation, and Bodily Souls: A Critique of Christian Physicalism.Brandon Rickabaugh & C. Stephen Evans - 2018 - In Loftin R. Keith & Farris Joshua (eds.), Christian Physicalism? Philosophical Theological Criticisms. Lexington. pp. 231-256.
    The link between human nature and human flourishing is undeniable. "A healthy tree cannot bear bad fruit, nor can a diseased tree bear good fruit" (Matt. 7:18). The ontology of the human person will, therefore, ground the nature of human flourishing and thereby sanctification. Spiritual formation is the area of Christian theology that studies sanctification, the Spirit-guided process whereby disciples of Jesus are formed into the image of Jesus (Rom. 8:28-29; 2 Cor. 3:18; 2 Peter 3:18). Until the nineteenth century, (...)
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  30. The representation of protein complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  31. An improved ontological representation of dendritic cells as a paradigm for all cell types.Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Liebermann, Chris Mungall, Richard H. Scheuermann, Barry Smith & Lindsay Cowell - 2009 - BMC Bioinformatics 10 (1):70.
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  32. Adam Smith's political philosophy: the invisible hand and spontaneous order.Craig Smith - 2006 - New York: Routledge.
    When Adam Smith published his celebrated writings on economics and moral philosophy he famously referred to the operation of an invisible hand. Adam Smith's Political Philosophy makes visible the invisible hand by examining its significance in Smith's political philosophy and relating it to similar concepts used by other philosophers, revealing a distinctive approach to social theory that stresses the significance of the unintended consequences of human action. This book introduces greater conceptual clarity to the discussion of the (...)
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  33. Measuring the Consequences of Rules: Holly M. Smith.Holly M. Smith - 2010 - Utilitas 22 (4):413-433.
    Recently two distinct forms of rule-utilitarianism have been introduced that differ on how to measure the consequences of rules. Brad Hooker advocates fixed-rate rule-utilitarianism, while Michael Ridge advocates variable-rate rule-utilitarianism. I argue that both of these are inferior to a new proposal, optimum-rate rule-utilitarianism. According to optimum-rate rule-utilitarianism, an ideal code is the code whose optimum acceptance level is no lower than that of any alternative code. I then argue that all three forms of rule-utilitarianism fall prey to two fatal (...)
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  34. The Subset View of Realization: Five Problems.Brandon N. Towl - manuscript
    The Subset View of realization, though it has some attractive advantages, also has several problems. In particular, there are five main problems that have emerged in the literature: Double-Counting, The Part/Whole Problem, The “No Addition of Being” Problem, The Problem of Projectibility, and the Problem of Spurious Kinds. Each is reviewed here, along with solutions (or partial solutions) to them. Taking these problems seriously constrains the form that a Subset view can take, and thus limits the kinds of relations that (...)
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  35. Moral grandstanding and political polarization: A multi-study consideration.Joshua B. Grubbs, Brandon Warmke, Justin Tosi & A. Shanti James - 2020 - Journal of Research in Personality 88.
    The present work posits that social motives, particularly status seeking in the form of moral grandstanding, are likely at least partially to blame for elevated levels of affective polarization and ideological extremism in the U.S. In Study 1, results from both undergraduates (N = 981; Mean age = 19.4; SD = 2.1; 69.7% women) and a cross-section of U.S. adults matched to 2010 census norms (N = 1,063; Mean age = 48.20, SD = 16.38; 49.8% women) indicated that prestige-motived grandstanding (...)
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  36. Interdisciplinary perspectives on the development, integration and application of cognitive ontologies.Janna Hastings, Gwen Alexandra Frishkoff, Barry Smith, Mark Jensen, Russell Poldrack, Jessica Turner, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica A. Turner & Maryann E. Martone - 2014 - Frontiers in Neuroinformatics 8 (62):1-7.
    We discuss recent progress in the development of cognitive ontologies and summarize three challenges in the coordinated development and application of these resources. Challenge 1 is to adopt a standardized definition for cognitive processes. We describe three possibilities and recommend one that is consistent with the standard view in cognitive and biomedical sciences. Challenge 2 is harmonization. Gaps and conflicts in representation must be resolved so that these resources can be combined for mark-up and interpretation of multi-modal data. Finally, Challenge (...)
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  37. International Religious Rights and Standards.Brandon Reece Taylorian - 2023 - Preston: The Religious Recognition Project.
    The principal finding of the doctoral research of Cometan (a.k.a. Brandon Reece Taylorian) was that the ways governments, both authoritarian and democratic, use their powers to recognise religions and beliefs and register religious or belief organisations is negatively impacting conditions of freedom of religion or belief. Cometan explored the range of recognition and registration issues plaguing religious freedom and other human rights and discovered that there lacks a definitive set of international standards to address some of the granular topics (...)
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  38. Ontological theory for ontological engineering: Biomedical systems information integration.James M. Fielding, Jonathan Simon, Werner Ceusters & Barry Smith - 2004 - In Fielding James M., Simon Jonathan, Ceusters Werner & Smith Barry (eds.), Proceedings of the Ninth International Conference on the Principles of Knowledge Representation and Reasoning (KR2004), Whistler, BC, 2-5 June 2004. pp. 114–120.
    Software application ontologies have the potential to become the keystone in state-of-the-art information management techniques. It is expected that these ontologies will support the sort of reasoning power required to navigate large and complex terminologies correctly and efficiently. Yet, there is one problem in particular that continues to stand in our way. As these terminological structures increase in size and complexity, and the drive to integrate them inevitably swells, it is clear that the level of consistency required for such navigation (...)
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  39. Doing and Allowing Harm to Refugees.Bradley Hillier-Smith - 2020 - Journal of Ethics and Social Philosophy 18 (3).
    Most theorists working on moral obligations to refugees conceive of western states as innocent bystanders with duties to aid refugees if they can do so at little cost to themselves. This paper challenges this dominant theoretical framing of global displacement by highlighting for the first time certain practices of western states in response to refugee flows such as border violence, detention, encampment and containment which may make us question whether states who engage in such practices are indeed innocent. This paper (...)
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  40. Ending Sex-Based Oppression: Transitional Pathways.Holly Lawford-Smith - 2020 - Philosophia 49 (3):1021-1041.
    From a radical feminist perspective, gender is a cage. Or to be more precise, it’s two cages. If genders are cages, then surely we want to let people out. Being less constrained in our choices is something we all have reason to want: theorists in recent years have emphasized the importance of the capability to do and be many different things. At the very least, we should want an end to sex-based oppression. But what does this entail, when it comes (...)
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  41.  52
    The Handbook of Antique Photographs: A Guide to Nineteenth Century Portraits.Brandon Reece Taylorian - 2024 - Preston: University of Central Lancashire.
    The Handbook of Antique Photographs is a short publication created by UCLan Associate Lecturer Brandon Reece Taylorian as part of his Dating Antique Photographs Project funded by UCLan's Institute of Creativity, Communities and Culture. The Handbook begins with a brief history of the origins of portrait photography followed by Taylorian's introduction of a step-by-step method for deconstructing and dating antique photographs ('antique' is defined in the Handbook as referring to any photograph that is more than 100 hundred years old). (...)
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  42. The Varieties of Musical Experience.Brandon Polite - 2014 - Pragmatism Today 5 (2):93-100.
    Many philosophers of music, especially within the analytic tradition, are essentialists with respect to musical experience. That is, they view their goal as that of isolating the essential set of features constitutive of the experience of music, qua music. Toward this end, they eliminate every element that would appear to be unnecessary for one to experience music as such. In doing so, they limit their analysis to the experience of a silent, motionless individual who listens with rapt attention to the (...)
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  43. What particulars are referred to in EHR data? A case study in integrating referent tracking into an electronic health record application.Ron Rudnicki, Werner Ceusters, Shaid Manzoo & Barry Smith - 2007 - In Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA. pp. 630-634.
    Referent Tracking (RT) advocates the use of instance unique identifiers to refer to the entities comprising the subject matter of patient health records. RT promises many benefits to those who use health record data to improve patient care. To further the adoption of the paradigm we provide an illustration of how data from an EHR application needs to be decomposed in order to make it accord with the tenets of RT. We describe the ontological principles on which this decomposition is (...)
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  44. The birth of ontology.Barry Smith - 2022 - Journal of Knowledge Structures and Systems 3 (1):57-66.
    This review focuses on the Ogdoas scholastica by Jacob Lorhard, published in 1606. The importance of this document turns on the fact that it contains what is almost certainly the first published occurrence of the term “ontology.” The body of the work consists in a series of diagrams called “diagraphs.” Relevant features of this compendium of diagraphs are: 1. that it does not in fact contain the word “ontology,” and 2. that Lorhard himself was not responsible for its content.
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  45. Bioportal: Ontologies and integrated data resources at the click of the mouse.L. Whetzel Patricia, H. Shah Nigam, F. Noy Natalya, Dai Benjamin, Dorf Michael, Griffith Nicholas, Jonquet Clement, Youn Cherie, Callendar Chris, Coulet Adrien, Barry Smith, Chris Chute & Mark Musen - 2011 - In Whetzel Patricia L., Shah Nigam H., Noy Natalya F., Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Cherie Youn, Chris Callendar, Adrien Coulet, Smith Barry, Chute Chris & Musen Mark (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY. pp. 292-293.
    BioPortal is a Web portal that provides access to a library of biomedical ontologies and terminologies developed in OWL, RDF(S), OBO format, Protégé frames, and Rich Release Format. BioPortal functionality, driven by a service-oriented architecture, includes the ability to browse, search and visualize ontologies (Figure 1). The Web interface also facilitates community-based participation in the evaluation and evolution of ontology content.
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  46. Stump's Forgiveness.Brandon Warmke - 2019 - European Journal for Philosophy of Religion 11 (1):145-163.
    To love someone, Eleonore Stump tells us, is to have two desires: a desire her objective good and a desire for union with her. In Atonement, Stump claims that loving someone—understood as having these desires—is necessary and sufficient for morally appropriate forgiveness. I offer several arguments against this claim.
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  47. TGF-beta signaling proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  48. Using philosophy to improve the coherence and interoperability of applications ontologies: A field report on the collaboration of IFOMIS and L&C.Jonathan Simon, James Matthew Fielding & Barry Smith - 2004 - In Gregor Büchel, Bertin Klein & Thomas Roth-Berghofer (eds.), Proceedings of the First Workshop on Philosophy and Informatics. Deutsches Forschungs­zentrum für künstliche Intelligenz, Cologne: 2004 (CEUR Workshop Proceedings 112). pp. 65-72.
    The collaboration of Language and Computing nv (L&C) and the Institute for Formal Ontology and Medical Information Science (IFOMIS) is guided by the hypothesis that quality constraints on ontologies for software ap-plication purposes closely parallel the constraints salient to the design of sound philosophical theories. The extent of this parallel has been poorly appreciated in the informatics community, and it turns out that importing the benefits of phi-losophical insight and methodology into application domains yields a variety of improvements. L&C’s LinKBase® (...)
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  49. The role of ontologies for sustainable, semantically interoperable and trustworthy EHR solutions.Bernd Blobel, Dipak Kalra, Marc Koehn, Ken Lunn, Peter Pharow, Pekka Ruotsalainen, Stefan Schulz & Barry Smith - 2009 - Studies in Health Technology and Informatics 150:953-957.
    As health systems around the world turn towards highly distributed, specialized and cooperative structures to increase quality and safety of care as well as efficiency and efficacy of delivery processes, there is a growing need for supporting communication and collaboration of all parties involved with advanced ICT solutions. The Electronic Health Record (EHR) provides the information platform which is maturing towards the eHealth core application. To meet the requirements for sustainable, semantically interoperable, and trustworthy EHR solutions, different standards and different (...)
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  50. The bridge between philosophy and information-driven science.Barry Smith - 2021 - Journal of Knowledge Structures and Systems 2 (2):47-55.
    This essay is a response to Luis M. Augusto’s intriguing paper on the rift between mainstream and formal ontology. I will show that there are in fact two questions at issue here: 1. concerning the links between mainstream and formal approaches within philosophy, and 2. concerning the application of philosophy (and especially philosophical ontology) in support of information-driven research for example in the life sciences.
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