I offer four ways of distinguishing paleobiology from neontology, and from this develop a sketch of the philosophy of paleobiology. I then situate and describe the papers in the special issue Paleobiology and Philosophy, and reflect on the value and prospects of paleontology-focused philosophy.

This article is a study of the role and use of evidence in the evaluation of claims in the historical sciences. In order to do this, I develop a “snapshot” approach to Toulmin schemas. This framework is applied to the case of Archezoa, an initially supported then eventually rejected hypothesis in evolutionary biology. From this case study, I criticize Cleland’s “smoking gun” account of the methodology of the historical sciences. I argue that Toulmin schemas are conceptually precise tools that allow (...) for the building of enriched reconstructions of evidential reasoning. From the application of this framework, I discuss three ways in which the construction and use of facts in the historical sciences are theory-laden. Despite its inherent limits, TS are heuristically useful tools to identify epistemic moves that could be further investigated. It also sheds light on the positive roles of speculation in the historical sciences. Finally, I argue that it provides a context-specific and individuated understanding of hypothesis evaluation in the historical sciences. Overall, I think the application of Toulmin schemas to cases of evidential reasoning in the historical sciences is a promising descriptive and heuristic tool for philosophers of science. (shrink)

Several scholars observed that narratives about the human past are evaluated comparatively. Few attempts have been made, however, to explore how such evaluations are actually done. Here I look at a lengthy “contest” among several historiographic narratives, all constructed to make sense of another one—the biblical story of the conquest of Canaan. I conclude that the preference of such narratives can be construed as a rational choice. In particular, an easily comprehensible and emotionally evocative narrative will give way to a (...) complex and mundane one, when the latter provides a more coherent account of the consensually accepted body of evidence. This points to a fundamental difference between historiographic narratives and fiction, contrary to some influential opinions in the philosophy of historiography. Such historiographic narratives have similarities with hypotheses and narrative explanations in natural science. (shrink)

I explore an intriguing area that has crept under the radar of today's science‐and‐theology conversation, namely, scientific studies of the big miracle and catastrophe stories of the Bible (e.g., Noah's flood, or the plagues of Egypt). These studies have proposed naturalistic explanations for some of the most spectacular and unlikely of the biblical miracles. While the scientists believe their naturalistic interpretations represent a major advance in understanding the stories, professional biblical scholars show little interest, or are openly disdainful. I will (...) point out the striking parallels with the foundational “catastrophism‐uniformitarianism” controversy in nineteenth‐century geology, and will suggest that the debate also takes us toward a novel kind of natural theology when we consider the biblical miracle and catastrophe texts. Here, the spectacular scientific explanations do not deny the miraculous character of the biblical stories so much as provide a uniquely modern purchase on their transcendent quality. (shrink)

In this paper, I discuss several temporal aspects of paleontology from a philosophical perspective. I begin by presenting the general problem of “taming” deep time to make it comprehensible at a human scale, starting with the traditional geologic time scale: an event-based, relative time scale consisting of a hierarchy of chronological units. Not only does the relative timescale provide a basis for reconstructing many of the general features of the history of life, but it is also consonant with the cognitive (...) processes humans use to think about time. Absolute dating of rocks, fossils, and evolutionary events (such as branching events on the tree of life) can be accomplished through the use of radiometric dating, chronological signals extractable from fossil growth patterns, and the “molecular clock.” Sometimes these different methods of absolute dating, which start from largely independent assumptions and evidentiary bases, converge in their temporal estimates, resulting in a consilience of inductions. At other times they fail to agree, either because fossils and molecules are giving temporal information about different aspects of nature and should not be expected to agree, or because of flawed assumptions that give rise to an inaccurate estimate. I argue that in general, despite the fact that it can be difficult to integrate disparate kinds of evidence, the principle of total evidence should be applied to the dating of evolutionary events. As a historical science, paleontology studies past events we cannot observe directly. This raises questions of epistemic access, meaning that due to the fragmentary nature of the fossil record we may find ourselves without access to the relevant traces to adjudicate between rival hypotheses about the past. The problems and prospects of epistemic access are explored through a case study of the reconstruction of the colors of dinosaurs. The paper closes with a reflection on the Darwin- Lyell metaphor of the fossil record as a highly fragmentary history book, and a call for a reconsideration of the book metaphor in favor of a systems view of the geologic and fossil records. (shrink)

The past can be a stubborn subject: it is complex, heterogeneous and opaque. To understand it, one must decide which aspects of the past to emphasise and which to minimise. Enter frameworks. Frameworks foreground certain aspects of the historical record while backgrounding others. As such, they are both necessary for, and conducive to, good history as well as good philosophy. We examine the role of frameworks in the history and philosophy of science and argue that they are necessary for both (...) forms of enquiry. We then suggest that the right attitude towards frameworks is pluralism rather than monism: there is no single correct framework to be applied to a given scientific episode. Rather, a multitude of different frameworks are more or less appropriate given various contexts and aims. From this perspective, good frameworks generate and further, rather than frustrate, historical and philosophical enquiry. Our view sheds light on historical disagreement, and on the relationship between philosophy and history of science. (shrink)

Archaeological data are shadowy in a number of senses. Not only are they notoriously fragmentary but the conceptual and technical scaffolding on which archaeologists rely to constitute these data as evidence can be as constraining as it is enabling. A recurrent theme in internal archaeological debate is that reliance on sedimented layers of interpretative scaffolding carries the risk that “preunderstandings” configure what archaeologists recognize and record as primary data, and how they interpret it as evidence. The selective and destructive nature (...) of data capture in archeology further suggests that there may be little scope for putting “legacy” data to work in new ways. And yet archaeologists have been strikingly successful in mining old datasets for new insights. I situate these concerns in the broader context of debate about the epistemic standing of the historical sciences, and then consider three strategies by which archaeologists address the challenges posed by legacy data. The first two – secondary retrieval and recontextualization – are a matter of reconfiguring the scaffolding that underpins evidential reasoning. The third turns on redeploying old data in the context of computational models that support the experimental simulation of the cultural systems and contexts under study. (shrink)

Competition between scientific hypotheses is not always a matter of mutual exclusivity. Consistent hypotheses can compete to varying degrees either directly or indirectly via a body of evidence. We motivate and defend a particular account of hypothesis competition by showing how it captures these features. Computer simulations of Bayesian inference are used to highlight the limitations of adopting mutual exclusivity as a simplifying assumption to model scientific reasoning, particularly due to the exclusion of hypotheses that may be true. We end (...) with a case study demonstrating the subtleties involved in hypothesis competition in scientific practice. (shrink)

I identify a controversial hypothesis in evolutionary biology called the plasticity-first hypothesis. I argue that the plasticity-first hypothesis is underdetermined and that the most popular means of studying the plasticity-first hypothesis are insufficient to confirm or disconfirm it. I offer a strategy for overcoming this problem. Researchers need to develop a richer middle range theory of plasticity-first evolution that allows them to identify distinctive empirical traces of the hypothesis. They can then use those traces to discriminate between rival explanations of (...) evolutionary episodes. The best tools for developing such a middle range theory are experimental evolution and formal modelling. (shrink)

The goal of this dissertation is to contribute to the epistemology of science by addressing a set of related questions arising from current discussions in the philosophy and science of climate change: (1) Given the imperfection of computer models, how do they provide information about large and complex target systems? (2) What is the relationship between consilient reasoning and robust evidential support in the production of scientific knowledge? (3) Does taking the mean of a set of model outputs provide epistemic (...) advantages over using the output of a single ‘best model’? Synthesizing research in philosophy and science, the thesis analyzes connections among consilient inductions, robustness analysis, and the aggregation of various sources of evidence, including computer simulations, by investigating case studies of climate change that exemplify the strength of consilient reasoning and the security of robust evidential support. It also explains the rationale and epistemic conditions for improving estimates by averaging multiple estimates, comparing a simple case of averaging estimates to practices in multi-model ensemble studies. I argue: (A) the concepts of consilience and robustness account for the strength and security of inferences that rely on imperfect computer modelling methods, (B) consilient reasoning is conducive to attaining robust evidential support, and (C) an analogy can explain why averaging the outputs of multiple models can improve estimates of a target system, given that conditions of model independence, skill and unequal weighting are taken into account. (shrink)

The epistemology of studies addressing questions about historical and prehistorical phenomena is a subject of increasing discussion among philosophers of science. A related field of inquiry that has yet to be connected to this topic is the epistemology of climate science. Branching these areas of research, I show how variety-of-evidence reasoning accounts for scientific inferences about the past by detailing a case study in paleoclimate reconstruction. This analysis aims to clarify the logic of historical inquiry in general and, by focusing (...) on a case study about climate change, it offers an epistemic account of a particular discipline that is of environmental and social importance. (shrink)

Although environmental philosophy and the human exploration of space share common beginnings, scholars from either field have not given adequate attention to the possible connections between them. In this essay, we seek to spur the rapprochement and cross-fertilization of philosophy and space policy by highlighting the philosophic dimensions of space exploration, pulling together issues and authors that have had insufficient contact with one another. We do so by offering an account of three topics: planetary exploration, planetary protection and the search (...) for extraterrestrial life, and terraforming. The resulting synthesis seeks to change our thinking about earthbound environmental ethics as it considers the philosophical dimensions of space exploration, and introduces the possible benefits of a humanities-oriented approach to space policy. (shrink)

The objective of this dissertation is to write the first pages of the biography of paleobiological data. I will focus on i) the genesis of this kind of data as it emerged in German stratigraphy and paleontology between the mid 19th and the early 20th centuries and ii) how the conceptualization of the paleontological data was reformulated and taken as the starting point for studying the patterns of the diversity of life in deep time between the 1940s and 70s. This (...) is the turning point that marks the ‘coming into being’ of specifically paleobiological data. I will reconstruct in detail how it was possible to transform an incomplete and misleading material object — the fossil record that can be admired in a museum —into a no longer misleading source of knowledge. I will namely describe the genesis of the paleobiological practice by retracing the encounter of two different approaches to the fossil record between the mid 19th and early 20th centuries in German academia and their later diffusion into English-speaking countries. (shrink)

What, if anything, is wrong with conspiracy theories (CTs)? A conspiracy refers to a group of people acting in secret to achieve some nefarious goal. Given that the pages of history are full of such plots, however, why are CTs often regarded with suspicion and even disdain? According to “particularism,” the currently dominant view among philosophers, each CT should be evaluated on its own merits and the negative reputation of CTs as a class is wholly undeserved. In this paper, I (...) defend a moderate version of “generalism,” the view that there is indeed something prima facie suspicious about CTs, properly defined, and that they suffer from common epistemic defects. To demarcate legitimate theorizing about real-life conspiracies from “mere conspiracy theories” (in the pejorative sense), I draw on a deep asymmetry between causes and effects in the natural world. Because of their extreme resilience to counterevidence, CTs can be seen as the epistemological equivalent of black holes, in which unwary truth-seekers are drawn, never to escape. Finally, by presenting a generic “recipe” for generating novel CTs around any given event, regardless of the circumstances and the available evidence, I rescue the intuitions beneath colloquial phrases like “That's just a conspiracy theory.”. (shrink)

Historical scientists frequently face incomplete data, and lack direct experimental access to their targets. This has led some philosophers and scientists to be pessimistic about the epistemic potential of the historical sciences. And yet, historical science often produces plausible, sophisticated hypotheses. I explain this capacity to generate knowledge in the face of apparent evidential scarcity by examining recent work on Thylacoleo carnifex, the ‘marsupial lion’. Here, we see two important methodological features. First, historical scientists are methodological omnivores, that is, they (...) construct purpose-built epistemic tools tailored to generate evidence about highly specific targets. This allows them to produce multiple streams of independent evidence and thus maximize their epistemic reach. Second, investigative scaffolding: research proceeds in a piece-meal fashion, information only gaining evidential relevance once certain hypotheses are well supported. I illustrate scaffolding in a discussion of the nature of functional ascription in paleobiology. Frequently, different senses of ‘function’ are not discriminated during paleobiological investigation—something which can mar adaptationist investigations of extant organisms. However, I argue that, due to scaffolding, conflating senses of ‘function’ can be the right thing to do. Coarse-grained functional hypotheses are required before it is clear what evidence could discriminate between more fine-grained ones. I draw on omnivory and scaffolding to argue that pessimists make a bad empirical bet. It is a bad idea to bet against the epistemic fortunes of such opportunistic and resourceful scientists, especially when we have reason to think we will systematically underestimate the amount of evidence ultimately available to them. (shrink)

The distinction between idiographic science, which aims to reconstruct sequences of particular events, and nomothetic science, which aims to discover laws and regularities, is crucial for understanding the paleobiological revolution of the 1970s and 1980s. Stephen Jay Gould at times seemed conflicted about whether to say (a) that idiographic science is fine as it is or (b) that paleontology would have more credibility if it were more nomothetic. Ironically, one of the lasting results of the paleobiological revolution was a new (...) way of doing historical science that defies categorization as idiographic or nomothetic. Yet the tension between (a) and (b) persists in some recent work in the philosophy of science, with Carol Cleland defending a version of (a) and Dan McShea and Robert Brandon defending a version of (b). In placing Cleland's work into conversation with that of McShea and Brandon, this paper defends a third (c) synthetic approach that emphasizes the blending of idiographic and nomothetic work. (shrink)

Geologists, Paleontologists and other historical scientists are frequently concerned with narrative explanations targeting single cases. I show that two distinct explanatory strategies are employed in narratives, simple and complex. A simple narrative has minimal causal detail and is embedded in a regularity, whereas a complex narrative is more detailed and not embedded. The distinction is illustrated through two case studies: the ‘snowball earth’ explanation of Neoproterozoic glaciation and recent attempts to explain gigantism in Sauropods. This distinction is revelatory of historical (...) science. I argue that at least sometimes which strategy is appropriate is not a pragmatic issue, but turns on the nature of the target. Moreover, the distinction reveals a counterintuitive pattern of progress in some historical explanation: shifting from simple to complex. Sometimes, historical scientists rightly abandon simple, unified explanations in favour of disunified, complex narratives. Finally I compare narrative and mechanistic explanation, arguing that mechanistic approaches are inappropriate for complex narrative explanations. (shrink)

Cet article propose une étude conceptuelle d’une pratique scientifique. L’analyse phylogénétique, méthode phare en biologie de l’évolution, permet d’inférer les relations évolutives entre différentes espèces ou organismes. De nos jours, elle fait souvent intervenir l’usage de données moléculaires, dont les résultats sont appelés des phylogénies moléculaires. Comment caractériser cette pratique? Nous commençons par une présentation de la méthode, en la découpant en quatre étapes : (1) l’identification puis (2) l’alignement de séquences homologues (descendants d’un ancêtre commun) ; (3) la construction (...) puis (4) l’interprétation d’un arbre phylogénétique. Nous montrons que l’analyse phylogénétique n’est pas une expérimentation, et donc n’appartient pas au « style de laboratoire », tel que défini par Hacking. Elle ne correspond pas non plus à une méthode typique des sciences historiques, telle que décrite par Cleland. Bien que la correspondance de l’analyse phylogénétique avec ces catégorisations ne soit que partielle, nous défendons l’utilité de chacune de ces confrontations pour souligner des aspects distincts de cette pratique. Nous remettons aussi en cause l’idée d’une séparation méthodologique nette entre sciences expérimentales et sciences historiques. (shrink)

A number of areas of biology raise questions about what is of value in the natural environment and how we ought to behave towards it: conservation biology, environmental science, and ecology, to name a few. Based on my experience teaching students from these and similar majors, I argue that the field of environmental ethics has much to teach these students. They come to me with pent-up questions and a feeling that more is needed to fully engage in their subjects, and (...) I believe some exposure to environmental ethics can help focus their interests and goals. I identify three primary areas in which environmental ethics can con- tribute to their education. The first is an examination of who (or what) should be considered to be part of our moral community (i.e., the community to whom we owe direct duties). Is it humans only? Or does it include all sentient life? Or all life? Or ecosystems considered holistically? Often, readings implicitly assume one or more of these answers; the goal is to make the student more sensitive to these implicit claims and to get them to think about the different reasons that support them. The second area, related to the first, is the application of the different answers concerning the extent of the ethical community to real environmental issues and problems. Students need to be aware of how the different answers concerning the moral community can imply conflicting answers for how we should act in certain cases and to think about ways to move toward conflict resolution. The third area in which environmental ethics can contribute is a more conceptual one, focusing on central concepts such as biodiversity, sustainability, species, and ecosystems. Exploring and evaluating various meanings of these terms will make students more reflective and thoughtful citizens and biologists, sensitive to the implications that different conceptual choices make. (shrink)

Both paleobiology and investigations of ‘major evolutionary transitions’ are intimately concerned with the macroevolutionary shape of life. It is surprising, then, how little studies of major transitions are informed by paleontological perspectives and. I argue that this disconnect is partially justified because paleobiological investigation is typically ‘phenomena-led’, while investigations of major transitions are ‘theory-led’. The distinction turns on evidential relevance: in the former case, evidence is relevant in virtue of its relationship to some phenomena or hypotheses concerning those phenomena; in (...) the latter, evidence is relevant in virtue of providing insights into, or tests of, an abstract body of theory. Because paleobiological data is by-and-large irrelevant to the theory which underwrites the traditional conception of major transitions, it is of limited use to that research program. I suggest that although the traditional conception of major transitions is neither ad-hoc or problematically incomplete, its promise of providing unificatory explanations of the transitions is unlikely to be kept. Further, examining paleobiological investigations of mass extinctions and organogenesis, I further argue that whether or not transitions in paleobiology count as ‘major’ turns on how we conceive of major transitions ; although major transitions potentially have a unified theoretical basis, recent developments suggest that investigations are becoming increasingly phenomena-led; adopting phenomena-led investigations maximizes the evidence available to paleobiologists. (shrink)

With the ever-growing quality of observational data in astronomy, the complexity of astrophysical models has been increasing in turn. This trend raises the question: Are there still reasons to prefer simpler models if the final goal is an actual model-target comparison? I argue for two aspects in which astrophysical research may favor models having reduced complexity: first, to address the problem of determining the values of adjustable parameters and, second, to pave the way for a validation of the model based (...) on the modeler’s understanding of the scope of the model and the critical processes on the target’s side. (shrink)

This article considers the temporal dimension of data processing and use and the ways in which it affects the production and interpretation of knowledge claims. I start by distinguishing the time at which data collection, dissemination, and analysis occur from the time in which the phenomena for which data serve as evidence operate. Building on the analysis of two examples of data reuse from modeling and experimental practices in biology, I then argue that Dt affects how researchers select and interpret (...) data as evidence and identify and understand phenomena. (shrink)

The optimism vs. pessimism debate about the historical sciences is often framed in terms of arguments about the relative importance of overdetermination vs. underdetermination of historical claims by available evidence. While the interplay between natural processes that create multiple traces of past events (thereby conducive of overdetermination) and processes that erase past information (whence underdetermination) cannot be ignored, I locate the root of the debate in the epistemic granularity, or intuitively the level of detail, that pervades any historical claim justification (...) network. To reveal the role played by granularity, I elaborate a model of historical claim justification. This model maps out the different elements that enter the justification of historical claims (incl., actual and inferred states of affairs, dating and information reconstructing theories). It also incorporates the different types of processes that affect traces of past events (information creating, preserving, modifying, and destroying processes). Granularity is shown to play a pivotal role in all elements of this model, and thereby in the inferred justification of any historical claim. As a result, while upward or downward shifts in granularity may explain changes about claims being considered as overdetermined or underdetermined, epistemic granularity constitutes an integral part of evidential reasoning in the historical sciences (and possibly elsewhere). (shrink)

Modeling his position on Arthur Fine’s Natural Ontological Attitude, Derek Turner proposed the Natural Historical Attitude. Although these positions share a family resemblance, Turner’s position differs from Fine’s in two important ways. First, Fine’s contextualism is more fine-grained. Second, Turner’s argument for metaphysical agnosticism seems to lead to the implausible conclusion that we should be agnostic about the mind-independence of ordinary objects – a position in tension with Fine’s “core position.” While this paper presents a textual analysis of Fine’s and (...) Turner’s arguments, the conclusions reached here cohere well with some of the best empirically-informed assessments of the historical sciences. Given the diversity of the historical sciences, the fact that many claims in the historical sciences have enough support to be regarded as true, and the implausibility of Turner’s agnosticism, philosophers studying historical science would be better served by embracing a stance closer to Fine’s Natural Ontological Attitude. (shrink)

Using past episodes of climate change as a source of evidence to inform our projections about contemporary climate change requires establishing the extent to which episodes in the deep past are analogous to the current crisis. However, many scientists claim that contemporary rates of climate change (e.g., rates of carbon emissions or temperature change) are unprecedented, including compared to episodes in the deep past. If so, this would limit the utility of paleoclimate analogues. In this paper, I show how a (...) data adjustment procedure called “temporal scaling,” which must be applied to both contemporary and past rate data, complicates the claim that contemporary rates are truly unprecedented. On top of giving actionable recommendations to scientists, this paper advances the philosophical literature concerning the use of models that are known to be somewhat disanalogous to their target systems. (shrink)

Engineering failure investigations seek to reconstruct the actual causes of major engineering failures. The investigators need to establish the existence of certain past events and the actual causal relationships that these events bear to the failures in question. In this paper, I examine one method for reconstructing the actual causes of failure events, which I call "feature dependence". The basic idea of feature dependence is that some features of an event are informative about the features of its causes; therefore, the (...) investigators can use the features of a known failure event to reconstruct details of its causes. I make explicit the structure of feature dependence and the evidential basis of its key premises, and show how feature dependence works in the investigation of the American Airlines Flight 191 accident. (shrink)

In this paper we argue that the difference between standard measurement and proxy measurement in paleoclimatology should not be understood in terms of ‘directness’. Measurements taken by climatologists to be paradigmatically non-proxy exhibit the kinds of indirectness that are thought to separate them proxy measurement. Rather, proxy measurements and standard measurements differ in how they account for confounding causal factors. Measurements are ‘proxy’ to the extent that the measurements require vicarious controls, while measurements are not proxy, but rather ‘standard’, to (...) the extent that the measurement apparatus provides sufficient physical control on its own. Guided by this account of proxy measurement, we then consider some of the challenges specific to historical proxy measurement and how it is that historical scientists address these challenges. Historical scientists rely on significant causal dependencies and naturally preserved signals to mitigate the influence of destructive processes over time. (shrink)

Debate about the epistemic prowess of historical science has focused on local underdetermination problems generated by a lack of historical data; the prevalence of information loss over geological time, and the capacities of scientists to mitigate it. Drawing on Leonelli’s recent distinction between ‘phenomena-time’ and ‘data-time’ I argue that factors like data generation, curation and management significantly complexifies and undermines this: underdetermination is a bad way of framing the challenges historical scientists face. In doing so, I identify circumstances of epistemic (...) scarcity where underdetermination problems are particularly salient, and discuss cases where legacy data—data generated using differing technologies and systems of practice—are drawn upon to overcome underdetermination. This suggests that one source of overcoming underdetermination is our knowledge of science’s past. Further, data-time makes agnostic positions about the epistemic fortunes of scientists working under epistemic scarcity more plausible. But agnosticism seems to leave philosophers without much normative grip. So, I sketch an alternative approach: focusing on the strategies scientists adopt to maximize their epistemic power in light of the resources available to them. (shrink)

We identify a species of experiment—Kon-Tiki experiments—used to demonstrate the competence of a cause to produce a certain effect, and we examine their role in the historical sciences. We argue that Kon-Tiki experiments are used to test middle-range theory, to test assumptions within historical narratives, and to open new avenues of inquiry. We show how the results of Kon-Tiki experiments are involved in projective inferences, and we argue that reliance on projective inferences does not provide historical scientists with any special (...) protection against the problem of unconceived alternatives. (shrink)

In a well-cited book chapter, ecologist Jared Diamond characterizes three main types of experiment performed in community ecology: laboratory experiment, field experiment, and natural experiment. Diamond argues that each form of experiment has strengths and weaknesses, with respect to, for example, realism or the ability to follow a causal trajectory. But does Diamond’s typology exhaust the available kinds of cause-finding practices? Some social scientists have characterized something they call “causal process tracing.” Is this a fourth type of experiment or something (...) else? I examine Diamond’s typology and causal process tracing in the context of a case study concerning the dynamics of wolf and deer populations on the Kaibab Plateau in the 1920s, a case that has been used as a canonical example of a trophic cascade by ecologists but which has also been subject to controversy. I argue that ecologists have profitably deployed causal process tracing together with other types of experiment to help settle questions of causality in this case. It remains to be seen how widespread the use of causal process tracing outside of the social sciences is (or could be), but there are some potentially promising applications, particularly with respect to questions about specific causal sequences. (shrink)

Paleobiologists often provide simple narratives to explain complex, contingent episodes. These narratives are sometimes ‘one-shot hypotheses’ which are treated as being mutually exclusive with other possible explanations of the target episode, and are thus extended to accommodate as much about the episode as possible. I argue that a provisional preference for such hypotheses provides two kinds of productive scaffolding. First, they generate ‘hypothetical difference-makers’: one-shot hypotheses highlight and isolate empirically tractable dependencies between variables. Second, investigations of hypothetical difference-makers provision explanatory (...) resources, the ‘raw materials’ for constructing more complex—and likely more adequate—explanations. Provisional preferences for simple, one-shot hypotheses in historical science, then, is defeasibly justified on indirect—strategic—grounds. My argument is made in reference to recent developments regarding the K–Pg extinction. (shrink)

Philosophers of science are well aware that theories are underdetermined by data. But what about the data? Scientific data are selected and processed representations or pieces of nature. What is useless context and what is valuable specimen, as well as how specimens are processed for study, are not obvious or predetermined givens. Instead, they are decisions made by scientists and other research workers, such as technicians, that produce different outcomes for the data. Vertebrate fossils provide a revealing case of this (...) data-processing, because they are embedded in rock that often matches the fossils’ color and texture, requiring an expert eye to judge where the fossil/context interface is. Fossil preparators then permanently define this interface by chiseling away the material they identify as rock. As a result, fossil specimens can emerge in multiple possible forms depending on the preparator’s judgment, skill, and chosen tools. A prepared fossil then is not yet data but potential data, following Leonelli’s relational framework in which data are defined as evidence that scientists have used to support a proposed theory. This paper draws on ethnographic evidence to assess how scientists overcome this underdetermination of specimens, as potential data, in addition to the underdetermination of theories and of data, to successfully construct specimen-based knowledge. Among other strategies, paleontology maintains a division of labor between data-makers and theory-makers. This distinction serves to justify the omission of preparators’ nonstandard, individualized techniques from scientific publications. This separation has benefits for both scientists and technicians; however, it restricts knowledge production by preventing scientists from understanding how the pieces of nature they study were processed into researchable specimens. (shrink)

This book examines the philosophical conception of abductive reasoning as developed by Charles S. Peirce, the founder of American pragmatism. It explores the historical and systematic connections of Peirce's original ideas and debates about their interpretations. Abduction is understood in a broad sense which covers the discovery and pursuit of hypotheses and inference to the best explanation. The analysis presents fresh insights into this notion of reasoning, which derives from effects to causes or from surprising observations to explanatory theories. The (...) author outlines some logical and AI approaches to abduction as well as studies various kinds of inverse problems in astronomy, physics, medicine, biology, and human sciences to provide examples of retroductions and abductions. The discussion covers also everyday examples with the implication of this notion in detective stories, one of Peirce’s own favorite themes. The author uses Bayesian probabilities to argue that explanatory abduction is a method of confirmation. He uses his own account of truth approximation to reformulate abduction as inference which leads to the truthlikeness of its conclusion. This allows a powerful abductive defense of scientific realism. This up-to-date survey and defense of the Peircean view of abduction may very well help researchers, students, and philosophers better understand the logic of truth-seeking. (shrink)

The current study compared the effectiveness of two methods in biology teaching that are based on the science-as-inquiry approach: visits to authentic university laboratories and analyzing adapted primary literature. The methods’ effectiveness was measured in terms of high-school students’ increased understanding following a 6-week intervention that emphasized five major aspects of the nature of science : the tentativeness of scientific understanding, the cooperative nature of the scientific process, methodological diversity, the sociocultural embeddedness of scientific knowledge, and the aims of scientific (...) inquiry. A quasi-experimental, pre-post control design was applied, utilizing quantitative evaluation methods. Findings indicate that teaching NOS in biology high-school classes using science-as-inquiry methods is an effective approach for enhancing NOS understanding. Both of the proposed methods appear to be promising; however, the AUL method was found to be more effective for enabling advanced-level high-school biology students’ understanding of these NOS aspects. In conclusion, both AUL and APL are potentially effective methods that can be adapted for teaching various biology subjects in different cultural contexts. (shrink)

We argue that narratives are central to the success of historical reconstruction. Narrative explanation involves tracing causal trajectories across time. The construction of narrative, then, often involves postulating relatively speculative causal connections between comparatively well-established events. But speculation is not always idle or harmful: it also aids in overcoming local underdetermination by forming scaffolds from which new evidence becomes relevant. Moreover, as our understanding of the past’s causal milieus become richer, the constraints on narrative plausibility become increasingly strict: a narrative’s (...) admissibility does not turn on mere logical consistency with background data. Finally, narrative explanation and explanation generated by simple, formal models complement one another. Where models often achieve isolation and precision at the cost of simplification and abstraction, narratives can track complex changes in a trajectory over time at the cost of simplicity and precision. In combination both allow us to understand and explain highly complex historical sequences. (shrink)

The compact and, with \ M\, very massive object located at the center of the Milky Way is currently the very best candidate for a supermassive black hole in our immediate vicinity. The strongest evidence for this is provided by measurements of stellar orbits, variable X-ray emission, and strongly variable polarized near-infrared emission from the location of the radio source Sagittarius A* in the middle of the central stellar cluster. Simultaneous near-infrared and X-ray observations of SgrA* have revealed insights into (...) the emission mechanisms responsible for the powerful near-infrared and X-ray flares from within a few tens to one hundred Schwarzschild radii of such a putative SMBH. If SgrA* is indeed a SMBH it will, in projection onto the sky, have the largest event horizon and will certainly be the first and most important target for very long baseline interferometry observations currently being prepared by the event horizon telescope. These observations in combination with the infrared interferometry experiment GRAVITY at the very large telescope interferometer and other experiments across the electromagnetic spectrum might yield proof for the presence of a black hole at the center of the Milky Way. The large body of evidence continues to discriminate the identification of SgrA* as a SMBH from alternative possibilities. It is, however, unclear when the ever mounting evidence for SgrA* being associated with a SMBH will suffice as a convincing proof. Additional compelling evidence may come from future gravitational wave observatories. This manuscript reviews the observational facts, theoretical grounds and conceptual aspects for the case of SgrA* being a black hole. We treat theory and observations in the framework of the philosophical discussions about “realism and underdetermination”, as this line of arguments allows us to describe the situation in observational astrophysics with respect to supermassive black holes. Questions concerning the existence of supermassive black holes and in particular SgrA* are discussed using causation as an indispensable element. We show that the results of our investigation are convincingly mapped out by this combination of concepts. (shrink)

Protistology, and evolutionary protistology in particular, is experiencing a golden research era. It is an extended one that can be dated back to the 1970s, which is when the molecular rebirth of microbial phylogeny began in earnest. John Archibald, a professor of evolutionary microbiology at Dalhousie University, focuses on the beautiful story of endosymbiosis in his book, John Archibald, One Plus One Equals One: Symbiosis and the Origin of Complex Life. However, this historical narrative could be treated as synecdochal of (...) how the molecular revolution has changed evolutionary biology forever, and that is how Archibald has structured his book. I will address the encompassing theme of molecular methods in detail, but also pay careful attention to the endosymbiosis thread in its own right. (shrink)

Walter Bock was committed to developing a framework for evolutionary biology. Bock repeatedly discussed how evolutionary explanations should be considered within the realm of Hempel’s deductive-nomological model of scientific explanations. Explanation in evolution would then consist of functional and evolutionary explanations, and within the latter, an explanation can be of nomological-deductive and historical narrative explanations. Thus, a complete evolutionary explanation should include, first, a deductive functional analysis, and then proceed through nomological and historical evolutionary explanations. However, I will argue that (...) his views on the deductive proprieties of functional analysis and the deductive-nomological parts of evolution fail because of the nature of evolution, which contains a historical element that the logic of deduction and Hempel’s converting law model do not compass. Conversely, Bock’s historical approach gives a critical consideration of the historical narrative element of evolutionary explanation, which is fundamental to the methodology of the historical nature of evolutionary theory. Herein, I will expand and discuss a modern view of evolutionary explanations of traits that includes the currentacknowledgement of the differences between experimental and the historical sciences, including the token and type event dichotomy, that mutually illuminate each other in order to give us a well confirmed and coherent hypothesis for evolutionary explanations. Within this framework, I will argue that the duality of evolutionary explanations is related to two components of character evolution: origin, with its evolutionary pathways along with the history, and maintenance, the function (mainly a current function) for the character being selected. (shrink)

Fundamental knowledge of natural history is lacking in many western societies, as demonstrated by its absence in school science curricula. And yet, to meet local and global challenges such as environmental degradation, biodiversity loss and climate change, we need to better understand the living and non-living parts of the natural world. Many have argued passionately for an increased understanding of natural history; others have developed successful pedagogical programmes for applying knowledge of natural history in environmental initiatives. In joining wider calls, (...) we choose here to focus on the educational value afforded by understanding the epistemological bases of natural history and its particular forms of reasoning. We also briefly discuss the ways in which an education in natural history provides the foundation for environmental and social justice efforts that directly affect the lives of young people and their communities. We end by highlighting the ease by which natural history may be incorporated in learning opportunities both in and outside of the classroom. (shrink)

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Charles S. Peirce luokitteli 1865 päättelyn lajit deduktioon, induktioon ja hypoteesiin, joista viimeksi mainittua hän luonnehti päättelynä vaikutuksista syihin tai päättelynä selitykseen. Hypoteesi on Peircelle induktion ohella tietoa laajentava päätelmä. 1890-luvun lopun kirjoituksissaan hän alkoi kutsua hypoteettista päättelyä uusilla nimillä ”retroduktio” ja ”abduktio”. Tässä vaiheessa Peirce kuvasi abduktiota tieteellisen päättelyn ensimmäisenä askeleena, mahdollisten arvausten esittämisenä, jonka tulokset on asetettava induktion kautta testeihin. Hänen tunnetuin kaavionsa abduktion loogiselle muodolle on vuodelta 1903: The surprising fact C is observed; But if A were (...) true, C would be a matter of course. Hence, there is reason to think that A is true. Toisin sanoen abduktio päättelee yllättävästä tosiseikasta hypoteettiseen teoriaan, joka selittäisi tämän faktan. Peircen ajatukset tulivat laajemmin tunnetuiksi, kun kuusiosainen Collected Papers ilmestyi 1931-35. Maailmansodan jälkeen hänen ehdotuksiaan on tulkittu kolmessa suunnassa. Hansonin mukaan abduktio on keksimisen logiikkaa. Laudanin mukaan abduktiossa on kyse ohjeesta työskennellä kiinnostavan hypoteesin parissa. Harmanin mukaan abduktio on päättelyä parhaaseen selitykseen. Monet loogikot, tekoälyn tutkijat ja tieteenfilosofit käyttävät termiä ”abduktio” suoraviivaisesti IBE:n synonyyminä, kun taas varovaisemman kannan ottavat mm. Aliseda, Magnani ja Douven. Toisaalta tätä rinnastusta on eri syistä pidetty harhaanjohtavana abduktion todellisen luonteen ja tehtävän perusteella. Myös monet Peirce-tutkijat ovat ottaneet intohimoisesti kantaa asiaan vedoten mestarin monitulkintaisiin kirjoituksiin. Esimerkiksi Minnamaier esittää, että abduktion samaistaminen IBE:n kanssa hämärtäisi Peircen erottelua induktion ja abduktion välillä. Campos argumentoi, että abduktio tulisi rajata selittävien hypoteesien generoimiseen, joten valikointi hypoteesien välillä ei kuulu sen tehtäviin. Gaultierin mukaan skeeman johtopäätös ei ole suositus testata A:n totuutta, vaan selvittää, onko A todellakin mahdollinen selitys C:lle. Sen sijaan Nyrupin mukaan jättää avoimeksi, tukeeko onnistunut selitys hypoteesin totuutta, joten abduktiossa on kyse hypoteesin työstämisestä. Peircen kirjoituksista puolen vuosisadan aikana kuitenkin löytyy aineksia kaikille kolmelle abduktion päätulkinnalle. Abduktio on ainoa menetelmä uusien ideoiden generoimiseksi. Abduktio auttaa tunnistamaan testaamisen arvioisia hypoteeseja. Joissakin tapauksissa, kuten havainnoissa ja historiallisissa päätelmissä, abduktio on ”pakottavaa” tai ”täysin varmaa”, joten sillä voi olla tekemistä myös hypoteesien oikeuttamisen kanssa. Vaikka Peirce päätyi esittämään, ettei abduktiivisiin päätelmiin liity mitään todennäköisyyksiä, hän kuitenkin myöhäisissäkin töissään antoi abduktiolle selkeän loogisen muodon. Lisäksi abduktion ja IBE:n yhteyttä puolustaa käsikirjoitus ”The Logic of Drawing History from Ancient Documents”, jossa Peirce antaa kriteerejä ”abduktiolle eli hypoteesien valinnan prosessille”. Näitä kriteerejä ovat selitysvoima, testattavuus, varovaisuus, laajuus ja yksinkertaisuus. Samantapaisia metodologisia sääntöjä ovat muotoilleet ne tutkijat, jotka ovat kehitelleet eteenpäin IBE:n muotoja. Vastaus otsikon kysymykseen on siis ”kyllä ja ei”. Vaikka Peirce keksi termin ”abduktio”, hänellä ei ole loputonta yksinoikeutta määrätä sen käytöstä. Hän ajatuksensa ovat inspiroivia tavalla, joka voi johtaa abduktion tutkimisessa erilaisiin suuntiin. Näitä linjoja on tarpeetonta oikeaoppisesti pitää toisilleen vastakkaisina. Keksimisen logiikka on kiehtova aihe, mutta samalla tavoin on aihetta analysoida sitä, miten keksittyjen selityshypoteesien paremmuutta voidaan vertailla ja millaisilla ehdoilla voisimme olla oikeutettuja hyväksymään parhaan toistaiseksi löydetyistä selityksistä. Kaikki nämä loogis-metodologiset tutkimuslinjat tekevät omalla tavallaan oikeutta Peircen filosofian suurille oivalluksille. (shrink)