This chapter argues that scientific and philosophical progress in our understanding of the living world requires that we abandon a metaphysics of things in favour of one centred on processes. We identify three main empirical motivations for adopting a process ontology in biology: metabolic turnover, life cycles, and ecological interdependence. We show how taking a processual stance in the philosophy of biology enables us to ground existing critiques of essentialism, reductionism, and mechanicism, all of which have traditionally been associated with (...) substance ontology. We illustrate the consequences of embracing an ontology of processes in biology by considering some of its implications for physiology, genetics, evolution, and medicine. And we attempt to locate the subsequent chapters of the book in relation to the position we defend. (shrink)

Kant’s theory of biology in the Critique of the Power of Judgment may be rejected as obsolete and attacked from two opposite perspectives. In light of recent advances in biology one can claim contra Kant, on the one hand, that biological phenomena, which Kant held could only be explicated with the help of teleological principles, can in fact be explained in an entirely mechanical manner, or on the other, that despite the irreducibility of biology to physico-mechanical explanations, it is nonetheless (...) proper science. I argue in response that Kant’s analysis of organisms is by no means obsolete. It reveals biology’s uniqueness in much the same way as several current theorists do. It brings to the fore the unique purposive characteristics of living phenomena, which are encapsulated in Kant’s concept of “natural end” and which must be explicated in natural terms in order for biology to become a science. I maintain that Kant’s reluctance to consider biology proper science is not a consequence of his critical philosophy but rather of his inability to complete this task. Kant lacked an appropriate theoretical framework, such as provided later by modern biology, which would enable the integration of the unique features of biology in an empirical system. Nevertheless, as I show in this paper, the conceptual problems with which Kant struggled attest more to the relevance and depth of his insights than to the shortcomings of his view. His contribution to the biological thought consists in insisting on an empirical approach to biology and in providing the essential philosophical underpinning of the autonomous status of biology. (shrink)

Emergent antireductionism in biological sciences states that even though all living cells and organisms are composed of molecules, molecular wholes are characterized by emergent properties that can only be understood from the perspective of cellular and organismal levels of composition. Thus, an emergence claim (molecular wholes are characterized by emergent properties) is thought to support a form of antireductionism (properties of higher-level molecular wholes can only be understood by taking into account concepts, theories and explanations dealing with higher-level entities). I (...) argue that this argument is flawed: even if molecular wholes are characterized by emergent properties and even if many successful explanations in biology are not molecular, there is no entailment between the two claims. (shrink)

Biochemists often adopt what may be called the “Strategy of Decomposition” for the causal discovery of biochemical pathway dynamic behaviours. This involves decomposing a pathway into a set of isolated parts, which are then analysed separately. It is assumed that knowledge gained of the isolated parts can then be used to explain the dynamic behaviours of the whole pathway. My thesis addresses the extent to which use of the Strategy of Decomposition is warranted. I evaluate two challenges contained in Bechtel (...) and Richardson’s Discovering Complexity. The first challenge is that pathways lack the ‘modular’ structure assumed in the Strategy of Decomposition. Bechtel and Richardson take biochemists to use a concept of modularity called ‘near decomposability’. The second challenge is that pathways have ‘Pathway Emergent’ behaviours. I reject both challenges. I show that near decomposability is the wrong type of modularity to apply to pathways, and that the occurrence of Pathway Emergence has not been established. I argue that an underlying problem with Bechtel and Richardson’s analyses is that they overstate the consequences of feedback and nonlinearity for the Strategy of Decomposition. Instead, the analysis of pathway modularity and emergence needs to be centered on the context-sensitivity of pathways’ ‘local causal laws’. I identify that the type of modularity assumed in the Strategy of Decomposition is ‘causal law modularity’, which requires the invariance of local causal laws. I also identify a necessary condition for Pathway Emergence: a pathway must manifest at least one local causal law that is not manifested by its isolated parts. I argue that the use of the Strategy of Decomposition may often be unwarranted. This is because the local causal laws of pathways are highly context-sensitive, and pathways might often not be causal law modular. This context-sensitivity also leaves open the possibility of Pathway Emergence. (shrink)

This paper takes an integrated history and philosophy of science approach to the topic of "simplicity out of complexity". The reflex theory was a framework within early twentieth century psychology and neuroscience which aimed to decompose complex behaviours and neural responses into simple reflexes. It was controversial in its time, and did not live up to its own theoretical and empirical ambitions. Examination of this episode poses important questions about the limitations of simplifying strategies, and the relationship between simplification and (...) the engineering approach to biology. (shrink)

Processes produce changes: rivers erode their banks and thunderstorms cause floods. If I am right that organisms are a kind of process, then the causally efficacious behaviours of organisms are also examples of processes producing change. In this paper I shall try to articulate a view of how we should think of causation within a broadly processual ontology of the living world. Specifically, I shall argue that causation, at least in a central class of cases, is the interaction of processes, (...) that such causation is the exercise of a capacity inherent in that process and, negatively, that causation should not be understood as the instantiation of universal laws. The approach I describe has substantial similarities with the process causality articulated by Wesley Salmon and Phil Dowe for physical causation, making it plausible that the basic approach can be applied equally to the non-living world. It is an approach that builds at crucial points on the criticisms of determinism and universal causality famously articulated by Elizabeth Anscombe. (shrink)

Ernst Mayr’s concept of dual causality in biology with the two forms of causes continues to provide an essential foundation for the philosophy of biology. They are equivalent to functional and evolutionary causes with both required for full biological explanations. The natural sciences can be classified into nomological, historical nomological and historical dual causality, the last including only biology. Because evolutionary causality is unique to biology and must be included for all complete biological explanations, biology is autonomous from the physical (...) sciences. (shrink)

A crucial question for a process view of life is how to identify a process and how to follow it through time. The genidentity view can contribute decisively to this project. It says that the identity through time of an entity X is given by a well-identified series of continuous states of affairs. Genidentity helps address the problem of diachronic identity in the living world. This chapter describes the centrality of the concept of genidentity for David Hull and proposes an (...) extension of Hull’s view to the ubiquitous phenomenon of symbiosis. Finally, using immunology as a key example, it shows that the genidentity view suggests that the main interest of a process approach is epistemological rather than ontological and that its principal claim is one of priority, namely that processes precede and define things, and not vice versa. (shrink)

Joël Dolbeault | : D’abord, nous expliquons comment Bergson caractérise la liberté, et pourquoi celle-ci s’oppose à la fois au déterminisme et au hasard. Ensuite, nous montrons que la théorie bergsonienne de la liberté repose principalement sur l’idée que les états psychiques ne sont pas les occurrences de certains types, ce qui conduit à penser que leur apparition n’est pas gouvernée par l’action de lois. L’acte libre est causé par un sujet empirique, mais cette causalité n’est pas gouvernée par des (...) lois. Puis, nous soulignons l’originalité de cette théorie, notamment le fait qu’elle rejette le principe des possibilités alternatives, défendu par la plupart des libertariens actuels. À la fin de l’article, nous examinons plusieurs objections possibles contre cette théorie, en particulier l’objection inspirée par les expériences de Libet, ainsi que les réponses possibles. | : To begin with, we explain how Bergson characterizes free will and why it is opposed to both determinism and chance. Then we show that Bergson’s theory of free will is primarily based on the idea that mental states are not occurrences of certain types, which suggests that their appearance is not governed by the action of laws. The free act is caused by an empirical subject, but this causality is not governed by laws. Next, we highlight the originality of this theory, including the fact that it rejects the principle of alternative possibilities, defended by most of libertarians today. At the end of the article, we examine several possible objections against this theory, particularly the objection inspired by Libet’s experiments, and the possible answers. (shrink)

Nos ocupamos de la controversia científica sobre la plausibilidad del seleccionismo génico. En primer lugar, mostramos que esta controversia parece estar estancada en su conjunto y particularmente sobre la cuestión central: si los genes son el objeto de la selección natural. En segundo lugar, sostenemos que el estancamiento sobre esta cuestión se explica en buena medida porque las partes en disputa están posicionadas sobre modos distintos de comprender la genética. Finalmente, argumentamos que la controversia podría avanzar si se enfrentara un (...) asunto muy problemático que, a pesar de su relevancia, ha sido relegado a un segundo plano: cómo definir “gen” en términos moleculares. (shrink)

It is usually maintained by biologists and philosophers alike that essentialism is incompatible with evolutionary biology, and that abandoning essentialism was a precondition of progress being made in the biological sciences. These claims pose a problem for anyone familiar with both evolutionary biology and current metaphysics. Very few current scientific theories enjoy the prestige of evolutionary biology. But essentialism – long in the bad books amongst both biologists and philosophers – has been enjoying a strong resurgence of late amongst analytical (...) philosophers with a taste for metaphysics. Indeed, to impartial observers it is likely to appear that both evolutionary biology and essentialism are as well supported in their respective domains as could reasonably be expected. There is thus at least a prima facie tension here between evolutionary biology, metaphysics and, as we shall see, pre-theoretical common sense. (shrink)