This paper explores some issues concerning how we should think about interventions (in the sense of unconfounded manipulations) of "upper-level" variables in contexts in which these supervene on but are not identical with lower-level realizers. It is argued that we should reject the demand that interventions on upper-level variables must leave their lower-level realizers unchanged– a requirement that within an interventionist framework would imply that upper-level variables are causally inert. Instead an intervention on an upper-level variable at the same time (...) changes its lower-level realizer in a way that is consistent with the change in the upper- level variable. The lower-level realizer should not be regarded as a potential "confounder" of upper-level causal relations, as in "exclusionist" arguments. Several proposals for making this precise are considered and several pro-exclusionist arguments are criticized. (shrink)

This paper discusses some procedures developed in recent work in machine learning for inferring causal direction from observational data. The role of independence and invariance assumptions is emphasized. Several familiar examples including Hempel’s flagpole problem are explored in the light of these ideas. The framework is then applied to problems having to do with explanatory direction in non-causal explanation.

Functional robustness refers to a system’s ability to maintain a function in the face of perturbations to the causal structures that support performance of that function. Modularity, a crucial element of standard methods of causal inference and difference-making accounts of causation, refers to the independent manipulability of causal relationships within a system. Functional robustness appears to be at odds with modularity. If a function is maintained despite manipulation of some causal structure that supports that function, then the relationship between that (...) structure and function fails to be manipulable independent of other causal relationships within the system. Contrary to this line of reasoning, I argue that functional robustness often attends feedback control, rather than failures of modularity. Feedback control poses its own challenges to causal explanation and inference, but those challenges do not undermine modularity—and indeed, modularity is crucial to grappling with them. (shrink)

Kim’s causal exclusion argument purports to demonstrate that the non-reductive physicalist must treat mental properties (and macro-level properties in general) as causally inert. A number of authors have attempted to resist Kim’s conclusion by utilizing the conceptual resources of Woodward’s interventionist conception of causation. The viability of these responses has been challenged by Gebharter, who argues that the causal exclusion argument is vindicated by the theory of causal Bayesian networks (CBNs). Since the interventionist conception of causation relies crucially on CBNs (...) for its foundations, Gebharter’s argument appears to cast significant doubt on interventionism’s anti-reductionist credentials. In the present article, we both (1) demonstrate that Gebharter’s CBN-theoretic formulation of the exclusion argument relies on some unmotivated and philosophically significant assumptions (especially regarding the relationship between CBNs and the metaphysics of causal relevance), and (2) use Bayesian networks to develop a general theory of causal inference for multi-level systems that can serve as the foundation for an anti-reductionist interventionist account of causation.1. (shrink)

How should we reason in science? Jan Sprenger and Stephan Hartmann offer a refreshing take on classical topics in philosophy of science, using a single key concept to explain and to elucidate manifold aspects of scientific reasoning. They present good arguments and good inferences as being characterized by their effect on our rational degrees of belief. Refuting the view that there is no place for subjective attitudes in 'objective science', Sprenger and Hartmann explain the value of convincing evidence in terms (...) of a cycle of variations on the theme of representing rational degrees of belief by means of subjective probabilities (and changing them by Bayesian conditionalization). In doing so, they integrate Bayesian inference—the leading theory of rationality in social science—with the practice of 21st century science. Bayesian Philosophy of Science thereby shows how modeling such attitudes improves our understanding of causes, explanations, confirming evidence, and scientific models in general. It combines a scientifically minded and mathematically sophisticated approach with conceptual analysis and attention to methodological problems of modern science, especially in statistical inference, and is therefore a valuable resource for philosophers and scientific practitioners. (shrink)

Within the causal modeling literature, debates about the Causal Faithfulness Condition have concerned whether it is probable that the parameters in causal models will have values such that distinct causal paths will cancel. As the parameters in a model are fixed by the probability distribution over its variables, it is initially puzzling what it means to assign probabilities to these parameters. I propose that to assign a probability to a parameter in a model is to treat that parameter as a (...) function of a variable in an augmented model. By combining this proposal with widely adopted principles regarding which variables must be included in a model, I argue that the various proposed counterexamples to CFC involving coordinated parameters are not genuine counterexamples. I then consider the cases in which CFC fails due not to coordination, but by coincidence, and propose explanatory and predictive bases for ruling out such coincidences without presuming that they are improbable. The aim of the proposed defenses is not to show that CFC never fails, but rather to argue that its use in a particular context may be defended using general modeling assumptions rather than by relying on claims about how often it fails. (shrink)

Using the flexibility of recently developed methods for causal discovery based on Boolean satisfiability solvers, we encode a variety of assumptions that weaken the Faithfulness assumption. The encoding results in a number of SAT-based algorithms whose asymptotic correctness relies on weaker conditions than are standardly assumed. This implementation of a whole set of assumptions in the same platform enables us to systematically explore the effect of weakening the Faithfulness assumption on causal discovery. An important effect, suggested by simulation results, is (...) that adopting weaker assumptions greatly alleviates the problem of conflicting constraints and substantially shortens solving time. As a result, SAT-based causal discovery is potentially more scalable under weaker assumptions. (shrink)

Mechanist philosophers have examined several strategies scientists use for discovering causal mechanisms in neuroscience. Findings about the anatomical organization of the brain play a central role in several such strategies. Little attention has been paid, however, to the use of network analysis and causal modeling techniques for mechanism discovery. In particular, mechanist philosophers have not explored whether and how these strategies incorporate information about the anatomical organization of the brain. This paper clarifies these issues in the light of the distinction (...) between structural, functional and effective connectivity. Specifically, we examine two quantitative strategies currently used for causal discovery from functional neuroimaging data: dynamic causal modeling and probabilistic graphical modeling. We show that dynamic causal modeling uses findings about the brain’s anatomical organization to improve the statistical estimation of parameters in an already specified causal model of the target brain mechanism. Probabilistic graphical modeling, in contrast, makes no appeal to the brain’s anatomical organization, but lays bare the conditions under which correlational data suffice to license reliable inferences about the causal organization of a target brain mechanism. The question of whether findings about the anatomical organization of the brain can and should constrain the inference of causal networks remains open, but we show how the tools supplied by graphical modeling methods help to address it. (shrink)

Over the past three decades, the discourse on the mechanistic approach to scientific modelling and explanation has notably sidestepped the topic of simplicity and fit within the process of model selection. This paper aims to rectify this disconnect by delving into the topic of simplicity and fit within the context of mechanistic explanations. More precisely, our primary objective is to address whether simplicity metrics hold any significance within mechanistic explanations. If they do, then our inquiry extends to the suitability of (...) the Akaike Information Criterion (AIC), the Bayesian Information Criterion (BIC), and related criteria in determining the optimal balance of fit and simplicity of mechanistic models. As our main claims, we argue that mechanistic models inherently lend themselves to considerations of simplicity, and that the AIC and BIC and related criteria are applicable to some submodels of certain kinds of mechanistic models. However, these criteria and related criteria designed for curve fitting and causal modelling are of little help for a comparative assessment of full mechanistic models, and a fundamentally different approach is needed to make determinations of this kind. (shrink)

Does y obtain under the counterfactual supposition that x? The answer to this question is famously thought to depend on whether y obtains in the most similar world in which x obtains. What this notion of ‘similarity’ consists in is controversial, but in recent years, graphical causal models have proved incredibly useful in getting a handle on considerations of similarity between worlds. One limitation of the resulting conception of similarity is that it says nothing about what would obtain were the (...) causal structure to be different from what it actually is, or from what we believe it to be. In this paper, we explore the possibility of using graphical causal models to resolve counterfactual queries about causal structure by introducing a notion of similarity between causal graphs. Since there are multiple principled senses in which a graph G* can be more similar to a graph G than a graph G**, we introduce multiple similarity metrics, as well as multiple ways to prioritize the various metrics when settling counterfactual queries about causal structure. (shrink)