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  1. A Journey from Science through Systems Science in Pursuit of Change.Stanley N. Salthe - 2011 - World Futures 67 (4-5):282 - 303.
    This article traces my attempts to come to grips with the problem of change. Systems science deals with general principles, but, as with science in general, is wedded to mechanistic models. Natural systems are not machines, are generative, and can change unpredictably. An example is given showing that explicit dynamical models are subverted by the present moment, which is non-existent in them. This moment can be modeled by a compositional hierarchy, but no change happens therein. Subsumptive hierarchies can serve as (...)
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  • A hierarchical framework for levels of reality: Understanding through representation. [REVIEW]Stanley N. Salthe - 2009 - Axiomathes 19 (1):87-99.
    Levels of reality reflect one kind of complexity, which can be modeled using a specification hierarchy. Levels emerged during the Big Bang, as physical degrees of freedom became increasingly fixed as the expanding universe developed, and new degrees of freedom associated with higher levels opened up locally, requiring new descriptive semantics. History became embodied in higher level entities, which are increasingly individuated, aggregate patterns of lower level entities. Development is an epigenetic trajectory from vaguer to more definite and individuated embodiment, (...)
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  • Towards a multi-level approach to the emergence of meaning processes in living systems.João Queiroz & Charbel Niño El-Hani - 2006 - Acta Biotheoretica 54 (3):179-206.
    Any description of the emergence and evolution of different types of meaning processes (semiosis, sensu C.S.Peirce) in living systems must be supported by a theoretical framework which makes it possible to understand the nature and dynamics of such processes. Here we propose that the emergence of semiosis of different kinds can be understood as resulting from fundamental interactions in a triadically-organized hierarchical process. To grasp these interactions, we develop a model grounded on Stanley Salthe's hierarchical structuralism. This model can be (...)
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  • Causation and Information: Where Is Biological Meaning to Be Found?Mark Pharoah - 2020 - Biosemiotics 13 (3):309-326.
    The term ‘information’ is used extensively in biology, cognitive science and the philosophy of consciousness in relation to the concepts of ‘meaning’ and ‘causation’. While ‘information’ is a term that serves a useful purpose in specific disciplines, there is much to the concept that is problematic. Part 1 is a critique of the stance that information is an independently existing entity. On this view, and in biological contexts, systems transmit, acquire, assimilate, decode and manipulate it, and in so doing, generate (...)
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  • Knowledge in action: what the feet can learn to know.Katja Pettinen - 2022 - Semiotica 2022 (248):227-250.
    This article deploys Peircean approach to bodily skills, foregrounding motricity as a semiotically mediated and a “suprasubjective” process. By examining two contrasting skills – javelin and martial arts – I draw out the relevance of dynamic movement to the semiotics of sport and embodiment. These contrasting movements expose different epistemological assumptions since they emerge in distinct cultural traditions. To attend to the cultural dimension of movement practices – including the mediation of signs making certain movement forms seem reasonable or desirable (...)
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  • Ceteris paribus — an inadequate representation for biological contingency.Sandra D. Mitchell - 2002 - Erkenntnis 57 (3):329-350.
    It has been claimed that ceteris paribus laws, rather than strict laws are the proper aim of the special sciences. This is so because the causal regularities found in these domains are exception-ridden, being contingent on the presence of the appropriate conditions and the absence of interfering factors. I argue that the ceteris paribus strategy obscures rather than illuminates the important similarities and differences between representations of causal regularities in the exact and inexact sciences. In particular, a detailed account of (...)
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  • Distinctly human Umwelt?Floyd Merrell - 2001 - Semiotica 2001 (134).
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  • Complexity in Evolution: a Skeptical Assesment.Daniel W. Mcshea - 1997 - Philosophica 59 (1).
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  • Evolutionary trends and goal directedness.Daniel W. McShea - 2023 - Synthese 201 (5):1-26.
    The conventional wisdom declares that evolution is not goal directed, that teleological considerations play no part in our understanding of evolutionary trends. Here I argue that, to the contrary, under a current view of teleology, field theory, most evolutionary trends would have to be considered goal directed to some degree. Further, this view is consistent with a modern scientific outlook, and more particularly with evolutionary theory today. Field theory argues that goal directedness is produced by higher-level fields that direct entities (...)
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  • Functional complexity in organisms: Parts as proxies. [REVIEW]Daniel W. McShea - 2000 - Biology and Philosophy 15 (5):641-668.
    The functional complexity, or the number of functions, of organisms hasfigured prominently in certain theoretical and empirical work inevolutionary biology. Large-scale trends in functional complexity andcorrelations between functional complexity and other variables, such assize, have been proposed. However, the notion of number of functions hasalso been operationally intractable, in that no method has been developedfor counting functions in an organism in a systematic and reliable way.Thus, studies have had to rely on the largely unsupported assumption thatnumber of functions can be (...)
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  • Global idealism/local materialism.Koichiro Matsuno & Stanley N. Salthe - 1995 - Biology and Philosophy 10 (3):309-337.
    We are concerned with two modes of describing the dynamics of natural systems. Global descriptions require simultaneous global coordination of all dynamical operations. Global dynamics, including mechanics, remain invariant in the absence of external perturbation. But, failing impossible global coordination, dynamical operations could actually become coordinated only locally. In local records, as in global ones, the law of the excluded middle would be strictly observed, but without global coordination it could only be fullfilled sequentially by passing causative factors forward onto (...)
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  • Framework of space and time from the proto-semiotic perspective.Koichiro Matsuno - 2011 - Biosemiotics 4 (1):103-118.
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  • Jakob von Uexküll: An introduction.Kalevi Kull - 2001 - Semiotica 2001 (134):1-59.
    The article gives an account of life and work of Jakob von Uexk?ll, together with a description of his impact to theoretical biology, behavioural studies, and semiotics. It includes the complete bibliography of Uexk?ll's published works, as well as an extensive list of publications about him.
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  • Biosemiotics in the twentieth century: A view from biology.Kalevi Kull - 1999 - Semiotica 127 (1-4):385-414.
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  • Theory and Empiricism of Religious Evolution (THERE): Foundation of a Research Program (Part 2).Volkhard Krech - 2018 - Zeitschrift für Religionswissenschaft 26 (2):215-263.
    This two-part article presents the research program for a theory and empirical analysis of religious evolution. It is assumed that religion isprimarilya co-evolution to societal evolution, which in turn is a co-evolution to mental, organic, and physical evolution. The theory of evolution is triangulated with the systems theory and the semiotically informed theory of communication, so that knowledge can be gained that would not be acquired by only one of the three theories: The differentiation between religion and its environment can (...)
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  • Life’s organization between matter and form: Neo-Aristotelian approaches and biosemiotics.Çağlar Karaca - 2021 - History and Philosophy of the Life Sciences 43 (2):1-40.
    In this paper, I discuss the neo-Aristotelian approaches, which usually reinterpret Aristotle’s ideas on form and/or borrow the notion of formal cause without engaging with the broader implications of Aristotle’s metaphysics. In opposition to these approaches, I claim that biosemiotics can propose an alternative view on life’s form. Specifically, I examine the proposals to replace the formal cause with gene-centrism, functionalism, and structuralism. After critically addressing these approaches, I discuss the problems of reconciling Aristotelianism with the modern view of life’s (...)
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  • Developmental Ascendency: From Bottom-up to Top-down Control.James A. Coffman - 2006 - Biological Theory 1 (2):165-178.
    Development is a process whereby a relatively unspecified system comprised of loosely connected lower level parts becomes organized into a coherent, higher-level agency. Its temporal corollaries are growth, increasingly deterministic behavior, and a progressive reduction of developmental potential. During immature stages with relatively low specification and high potential, development is largely controlled by local interactions from the “bottom-up,” whereas during more highly specified stages with reduced potential, emergent autocatalytic processes exert “top-down” control. Robert Ulanowicz has shown that this phenomenology of (...)
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  • How causal is downward causation?Menno Hulswit - 2005 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 36 (2):261 - 287.
    The purpose of this paper is to lay bare the major problems underlying the concept of downward causation as discussed within the perspective of the present interest for phenomena that are characterized by self-organization. In our Discussion of the literature, we have focussed on two questions: (1) What sorts of things are said to be, respectively, causing and caused within the context of downward causation? And (2) What is the meaning of 'causing' in downward causation? We have concluded that the (...)
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  • Classification of emergence and its relation to self‐organization.Julianne D. Halley & David A. Winkler - 2008 - Complexity 13 (5):10-15.
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  • Toward an Ecological Civilization.Arran Gare - 2010 - Process Studies 39 (1):5-38.
    Chinese environmentalists have called for an ecological civilization. To promote this, ecology is defended as the core science embodying process metaphysics, and it is argued that as such ecology can serve as the foundation of such a civilization. Integrating hierarchy theory and Peircian semiotics into this science, it is shown how “community” and “communities of communities,” in which communities are defined by their organization to promote the common good of their components, have to be recognized as central concepts not only (...)
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  • Semiosis and Information: Meeting the Challenge of Information Science to Post-Reductionist Biosemiotics.Arran Gare - 2020 - Biosemiotics 13 (3):327-346.
    The concept of information and its relation to biosemiotics is a major area of contention among biosemioticians. Biosemioticians influenced by von Uexküll, Sebeok, Bateson and Peirce are critical of the way the concept as developed in information science has been applied to biology, while others believe that for biosemiotics to gain acceptance it will have to embrace information science and distance biosemiotics from Peirce’s philosophical work. Here I will defend the influence of Peirce on biosemiotics, arguing that information science and (...)
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  • Aspects of Complexity in Life and Science.Claus Emmeche - 1997 - Philosophica 59 (1).
    A short review of complexity research from the perspective of history and philosophy of biology is presented. Complexity and its emergence has scientific and metaphysical meanings. From its beginning, biology was a science of complex systems, but with the advent of electronic computing and the possibility of simulating mathematical models of complicated systems, new intuitions of complexity emerged, together with attempts to devise quantitative measures of complexity. But can we quantify the complex?
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  • The uniqueness of biological self-organization: Challenging the Darwinian paradigm.J. B. Edelmann & M. J. Denton - 2007 - Biology and Philosophy 22 (4):579-601.
    Here we discuss the challenge posed by self-organization to the Darwinian conception of evolution. As we point out, natural selection can only be the major creative agency in evolution if all or most of the adaptive complexity manifest in living organisms is built up over many generations by the cumulative selection of naturally occurring small, random mutations or variants, i.e., additive, incremental steps over an extended period of time. Biological self-organization—witnessed classically in the folding of a protein, or in the (...)
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  • In the light of time.Arto Annila - 2009 - Proceedings of Royal Society A 465:1173–1198.
    The concept of time is examined using the second law of thermodynamics that was recently formulated as an equation of motion. According to the statistical notion of increasing entropy, flows of energy diminish differences between energy densities that form space. The flow of energy is identified with the flow of time. The non-Euclidean energy landscape, i.e. the curved space–time, is in evolution when energy is flowing down along gradients and levelling the density differences. The flows along the steepest descents, i.e. (...)
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  • Why did life emerge?Arto Annila & Annila E. Annila A. - 2008 - International Journal of Astrobiology 7 (3-4):293–300.
    Many mechanisms, functions and structures of life have been unraveled. However, the fundamental driving force that propelled chemical evolution and led to life has remained obscure. The second law of thermodynamics, written as an equation of motion, reveals that elemental abiotic matter evolves from the equilibrium via chemical reactions that couple to external energy towards complex biotic non-equilibrium systems. Each time a new mechanism of energy transduction emerges, e.g., by random variation in syntheses, evolution prompts by punctuation and settles to (...)
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  • Natural process – Natural selection.Arto Annila - 2007 - Biophysical Chemistry 127: 123–128.
    Life is supported by a myriad of chemical reactions. To describe the overall process we have formulated entropy for an open system undergoing chemical reactions. The entropy formula allows us to recognize various ways for the system to move towards more probable states. These correspond to the basic processes of life i.e. proliferation, differentiation, expansion, energy intake, adaptation and maturation. We propose that the rate of entropy production by various mechanisms is the fitness criterion of natural selection. The quest for (...)
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  • Chreods, homeorhesis and biofields: Finding the right path for science.Arran Gare - 2017 - Progress in Biophysics and Molecular Biology 131:61-91.
    C.H. Waddington’s concepts of ‘chreods’ (canalized paths of development) and ‘homeorhesis’ (the tendency to return to a path), each associated with ‘morphogenetic fields’, were conceived by him as a contribution to complexity theory. Subsequent developments in complexity theory have largely ignored Waddington’s work and efforts to advance it. Waddington explained the development of the concept of chreod as the influence on his work of Alfred North Whitehead’s process philosophy, notably, the concept of concrescence as a self-causing process. Processes were recognized (...)
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  • Overcoming the Newtonian Paradigm: The Unfinished Project of Theoretical Biology from a Schellingian Perspective.Arran Gare - 2013 - Progress in Biophysics and Molecular Biology 113:5-24.
    Defending Robert Rosen’s claim that in every confrontation between physics and biology it is physics that has always had to give ground, it is shown that many of the most important advances in mathematics and physics over the last two centuries have followed from Schelling’s demand for a new physics that could make the emergence of life intelligible. Consequently, while reductionism prevails in biology, many biophysicists are resolutely anti-reductionist. This history is used to identify and defend a fragmented but progressive (...)
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  • Why Explicit Semiotic Grounding Is Essential to Biology as a Science? The Point of View of Biosemiotics.Elena Pagni - 2016 - Humana Mente (16):52-72.
    A common approach in biosemiotics suggests that semiosis (any activity or process that involves signs) is a natural process embedded in evolution, which entails the production of meaningful processes. As Pattee has argued, a closer look at living systems shows that semiosis is closely related to a very specific and highly functional context of selected constraints. Symbolic control consists in 1) instituting a friction on the novelty, variability and randomness of life processes 2) allowing survival value at all levels of (...)
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  • A verisimilitudinarian analysis of the Linda paradox.Gustavo Cevolani, Vincenzo Crupi & Roberto Festa - 2012 - VII Conference of the Spanish Society for Logic, Methodology and Philosphy of Science.
    The Linda paradox is a key topic in current debates on the rationality of human reasoning and its limitations. We present a novel analysis of this paradox, based on the notion of verisimilitude as studied in the philosophy of science. The comparison with an alternative analysis based on probabilistic confirmation suggests how to overcome some problems of our account by introducing an adequately defined notion of verisimilitudinarian confirmation.
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  • Genres as self-organising systems.Peter B. Andersen - 2000 - In P. B. Andersen, Claus Emmeche, N. O. Finnemann & P. V. Christiansen (eds.), Downward Causation. University of Aarhus Press. pp. 214--260.
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  • The Complex 'I'. The Formation of Identity in Complex Systems.Paul Cilliers & Tanya De Villiers-Botha - 2010 - In F. P. Cilliers & R. Preiser (eds.), Complexity, Difference and Identity. Issues in Business Ethics. Dordrecht: Springer. pp. 19–38.
    When we deal with complex things, like human subjects or organizations, we deal with identity – that which makes a person or an organization what it is and distinguishes him/her/it from other persons or organizations, a kind of “self”. Our identity determines how we think about and interact with others. It will be argued in this chapter that the self is constituted relationally. Moreover, when we are in the realm of the self, we are always already in the realm of (...)
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  • Code biology and the problem of emergence.Arran Gare - 2021 - Biosystems 208.
    It should now be recognized that codes are central to life and to understanding its more complex forms, including human culture. Recognizing the ‘conventional’ nature of codes provides solid grounds for rejecting efforts to reduce life to biochemistry and justifies according a place to semantics in life. The question I want to consider is whether this is enough. Focussing on Eigen’s paradox of how a complex code could originate, I will argue that along with Barbieri’s efforts to account for the (...)
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  • Evolutionary morphology and evo-devo: hierarchy and novelty.A. C. Love - 2006 - Theory in Biosciences 124:317–333.
    Although the role of morphology in evolutionary theory remains a subject of debate, assessing the contributions of morphological investigation to evolutionary developmental biology (Evo-devo) is a more circumscribed issue of direct relevance to ongoing research. Historical studies of morphologically oriented researchers and the formation of the Modern Synthesis in the Anglo-American context identify a recurring theme: the synthetic theory of evolution did not capture multiple levels of biological organization. When this feature is incorporated into a philosophical framework for explaining the (...)
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  • La teoría de sistemas en desarrollo: una vía para resolver la tensión entre las perspectivas “internalista” y “externalista” en la biología evolutiva.Eugenio Andrade - 2017 - Metatheoria – Revista de Filosofía E Historia de la Ciencia 8:145--155.
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  • Editorial. Special issue on Integral Biomathics: The Necessary Conjunction of the Western and Eastern Thought Traditions for Exploring the Nature of Mind and Life.Plamen L. Simeonov, Arran Gare, Koichiro Matsuno & Abir U. Igamberdiev - 2017 - Progress in Biophysics and Molecular Biology 131 (December, Focussed Issue):1-11.
    The idea about this special issue came from a paper published as an updated and upridged version of an older memorial lecture given by Brian D. Josephson and Michael Conrad at the Gujarat Vidyapith University in Ahmedabad, India on March 2, 1984. The title of this paper was “Uniting Eastern Philosophy and Western Science” (1992). We thought that this topic deserves to be revisited after 25 years to demonstrate to the scientific community which new insights and achievements were attained in (...)
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  • Material sign processes and emergent ecosocial organization.Jay L. Lemke - 2000 - In P. B. Andersen, Claus Emmeche, N. O. Finnemann & P. V. Christiansen (eds.), Downward Causation. University of Aarhus Press. pp. 181--213.
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  • The Western and Eastern thought traditions for exploring the nature of mind and life.Plamen L. Simeonov, Arran Gare, Koichiro Matsuno, Abir U. Igamberdiev & Denis Noble - 2017 - Progress in Biophysics and Molecular Biology 131:1-11.
    This is the editorial to the special edition of Progress in Biophysics and Molecular Biology on the role engagement with Eastern traditions of thought could play in the advancement of science generally and biology and the science of mind in particular.
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  • Beyond Desartes and Newton: Recovering life and humanity.Stuart A. Kauffman & Arran Gare - 2015 - Progress in Biophysics and Molecular Biology 119 (3):219-244.
    Attempts to ‘naturalize’ phenomenology challenge both traditional phenomenology and traditional approaches to cognitive science. They challenge Edmund Husserl’s rejection of naturalism and his attempt to establish phenomenology as a foundational transcendental discipline, and they challenge efforts to explain cognition through mainstream science. While appearing to be a retreat from the bold claims made for phenomenology, it is really its triumph. Naturalized phenomenology is spearheading a successful challenge to the heritage of Cartesian dualism. This converges with the reaction against Cartesian thought (...)
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  • Internalizing Aldo Leopold's Land Ethic The Communitarian Perspective on Ecological Sustainability and Social Policy.Arran Gare - 2021 - Cosmos and History: The Journal of Natural and Social Philosophy 17 (3):397-420.
    It is clear that environmentalist are failing in their efforts to avert a global ecological catastrophe. It is argued here that Aldo Leopold had provided the foundations for an effective environmental movement, but to develop his land ethic, it is necessary first to interpret and advance it by seeing it as a form of communitarianism, and link it to communitarian ethical and political philosophy. This synthesis can then be further developed by incorporating advanced ideas in ecology and human ecology. Overcoming (...)
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  • Downward determination.Charbel Niño El-Hani - 2005 - Abstracta 1 (2):162-192.
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  • The Semiotics of Global Warming: Combating Semiotic Corrruption.Arran Gare - 2007 - Theory and Science 9 (2):1-36.
    The central focus of this paper is the disjunction between the findings of climate science in revealing the threat of global warming and the failure to act appropriately to these warnings. The development of climate science can be illuminated through the perspective provided by Peircian semiotics, but efforts to account for its success as a science and its failure to convince people to act accordingly indicate the need to supplement Peirce’s ideas. The more significant gaps, it is argued, call for (...)
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  • Physical basis for the emergence of autopoiesis, cognition and knowledge.W. P. Hall - 2011 - Kororoit Institute Working Papers (2):1-63.
    Paper type: Conceptual perspective. Background(s): Physics, biology, epistemology Perspectives: Theory of autopoietic systems, Popperian evolutionary epistemology and the biology of cognition. Context: This paper is a contribution to developing the theories of hierarchically complex living systems and the natures of knowledge in such systems. Problem: Dissonance between the literatures of knowledge management and organization theory and my observations of the living organization led to consideration of foundation questions: What does it mean to be alive? What is knowledge? How are life (...)
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