Two metascientific concepts that have been ― and still are ― object of philosophical analysis are the concepts of model and theory. But while the concept of scientific theory was one of the concepts to which philosophers of science devoted most attention during the 20th century, it is only in recent decades that the concept of scientific model has come to occupy a central position in philosophical reflection. However, it has done so in such a way that, at present, as (...) Jim Bogen states in the back cover of the book Scientific Models in the Philosophy of Science, by Daniela Bailer-Jones, “[t]he standard philosophical literature on the role of models in scientific reasoning is voluminous, disorganized, and confusing”. In spite of this, one of the axes that would allow us to organize at least part of this literature, and with which Bailer-Jones’ book closes, is that which is identified as one of the “contemporary philosophical issues: how theories and models relate to each other” (Bailer-Jones 2009, p. 208).That is why, in this introduction to the special issues of Metatheoria devoted to the topic of “Models and Theories in Biology”, we will present the main advances that have been made in the philosophical analysis of the concepts of model and theory in general and in biology in particular, and we will also do the same with the answers that have been given to the problem of "how theories and models relate to each other”. (shrink)

The semantic view of theories is normally considered to be an ac-count of theories congenial to Scientific Realism. Recently, it has been argued that Ontic Structural Realism could be fruitfully applied, in combination with the semantic view, to some of the philosophical issues peculiarly related to bi-ology. Given the central role that models have in the semantic view, and the relevance that mathematics has in the definition of the concept of model, the fo-cus will be on population genetics, which is (...) one of the most mathematized areas in biology. We will analyse some of the difficulties which arise when trying to use Ontic Structural Realism to account for evolutionary biology. (shrink)

In what follows, I argue that the semantic approach to scientific theories fails as a means to present the Wright—Fisher formalism (WFF) of population genetics. I offer an account of what population geneticist understand insofar as they understand the WFF, a variation on Lloyd's view that population genetics can be understood as a family of models of mid-level generality.

According to the semantic view of scientific theories, theories are classes of models. I show that this view -- if taken seriously as a formal explication -- leads to absurdities. In particular, this view equates theories that are truly distinct, and it distinguishes theories that are truly equivalent. Furthermore, the semantic view lacks the resources to explicate interesting theoretical relations, such as embeddability of one theory into another. The untenability of the semantic view -- as currently formulated -- threatens to (...) undermine scientific structuralism. (shrink)

In this paper I distinguish various ways in which empirical claims about evolutionary and ecological models can be supported by data. I describe three basic factors bearing on confirmation of empirical claims: fit of the model to data; independent testing of various aspects of the model, and variety of evident. A brief description of the kinds of confirmation is followed by examples of each kind, drawn from a range of evolutionary and ecological theories. I conclude that the greater complexity and (...) precision of my approach, as compared to, for instance, a Popperian approach, can facilitate detailed analysis and comparison of empirical claims. (shrink)

Accounts of the relation between theories and models in biology concentrate on mathematical models. In this paper I consider the dual role of models as representations of natural systems and as a material basis for theorizing. In order to explicate the dual role, I develop the concept of a remnant model, a material entity made from parts of the natural system(s) under study. I present a case study of an important but neglected naturalist, Joseph Grinnell, to illustrate the extent to (...) which mundane practices in a museum setting constitute theorizing. I speculate that historical and sociological analyses of institutions can play a specific role in the philosophical analysis of model-building strategies. (shrink)

Recently several philosophers of science have proposed what has come to be known as the semantic account of scientific theories. It is presented as an improvement on the positivist account, which is now called the syntactic account of scientific theories. Bas van Fraassen claims that the syntactic account does not give a satisfactory definition of "empirical adequacy" and "empirical equivalence". He contends that his own semantic account does define these notations acceptably, through the concept of "embeddability", a concept which he (...) claims cannot be defined syntactically. Here, I define a syntactic relation which corresponds to the semantic relation of "embeddability". I suggest that the critical differences between the positivist account and van Fraassen's account have nothing to do with the distinction between semantics and syntax. (shrink)

A precise formulation of the structure of modern evolutionary theory has proved elusive. In this paper, I introduce and develop a formal approach to the structure of population genetics, evolutionary theory's most developed sub-theory. Under the semantic approach, used as a framework in this paper, presenting a theory consists in presenting a related family of models. I offer general guidelines and examples for the classification of population genetics models; the defining features of the models are taken to be their state (...) spaces, parameters, and laws. The suggestions regarding the various aspects of the characterization of population genetics models provide an outline for further detailed research. (shrink)

The conflation of two fundamentally distinct issues has generated serious confusion in the philosophical and biological literature concerning the units of selection. The question of how a unit of selection of defined, theoretically, is rarely distinguished from the question of how to determine the empirical accuracy of claims--either specific or general--concerning which unit(s) is undergoing selection processes. In this paper, I begin by refining a definition of the unit of selection, first presented in the philosophical literature by William Wimsatt, which (...) is grounded in the structure of natural selection models. I then explore the implications of this structural definition for empirical evaluation of claims about units of selection. I consider criticisms of this view presented by Elliott Sober--criticisms taken by some (for example, Mayo and Gilinsky 1987) to provide definitive damage to the structuralist account. I shall show that Sober has misinterpreted the structuralist views; he knocks down a straw man in order to motivate his own causal account. Furthermore, I shall argue, Sober's causal account is dependent on the structuralist account that he rejects. I conclude by indicating how the refined structural definition can clarify which sorts of empirical evidence could be brought to bear on a controversial case involving units of selection. (shrink)

Since the publication of his seminal monograph "The scientific image", Bas van Fraassen is a key figure in philosophy of science. In this book, other philosophers with various outlooks critically discuss his work on theories, empiricism and philosophical stances. The book starts with a new article by van Fraassen on his preferred account of theories, the so-called semantic view. This account is now 50 years old, and van Fraassen takes this anniversary as an opportunity to review the account, its history (...) and the philosophical discussion about it. In the main part of the book, Nancy Cartwright, Finnur Dellsén, Matthias Egg, Steven French, Michael Friedman, Milena Ivanova and Michela Massimi discuss van Fraassen's contributions to philosophy. Three chapters focus on his engagement with realism (French, Friedman, Ivanova). Others study his voluntarism (Cartwright) and his view on representation (Massimi). Finally, there are contributions about his elaboration of empiricism (Dellsén) and his proposal to consider philosophical positions as stances (Egg). The volume includes a laudatio written by Steven French and finishes with a reply by van Fraassen to his critics. (shrink)

This Ph.D. thesis provides a pilosophical account of the structure of the evolutionary synthesis of the 1930s and 40s. The first, more historical part analyses how classical genetics came to be integrated into evolutionary thinking, highlighting in particular the importance of chromosomal mapping of Drosophila strains collected in the wild by Dobzansky, but also the work of Goldschmidt, Sumners, Timofeeff-Ressovsky and others. The second, more philosophical part attempts to answer the question wherein the unity of the synthesis consisted. I argue (...) that it exemplifies a weak of form of explanatory unification. (shrink)

Synthesising arguments motivate changes to the conceptual tools, theoretical structure, and evaluatory framework employed in a given scientific domain. Recently, a broad coalition of researchers has put forward a synthesising argument in favour of an Extended Evolutionary Synthesis (‘EES’). Often this synthesising argument is evaluated using a virtue-based approach, which construes the EES as a wholesale alternative to prevailing practice. Here I argue this virtue-based approach is not fit for purpose. Taking the central concept of niche construction as a case (...) study, I show that an agenda-based approach better captures the pragmatic and epistemological goals of the EES synthesising argument and diagnoses areas of empirical disagreement with prevailing practice. (shrink)

Selection type theories solve adaptation problems. Natural selection, clonal selection for antibody production, and selective theories of higher brain function are examples. An abstract characterization of typical selection processes is generated by analyzing and extending previous work on the nature of natural selection. Once constructed, this abstraction provides a useful tool for analyzing the nature of other selection theories and may be of use in new instances of theory construction. This suggests the potential fruitfulness of research to find other theory (...) types and construct their abstractions. (shrink)

Sustained controversy over a philosophical issue is often times symptomatic of differing commitments at a more fundamental philosophical level. I will argue that two current debates over the foundations of the theory of natural selection are cases in point. Alexander Rosenberg, at times together with Mary Williams, challenges what is becoming received orthodoxy about the foundations of this theory. He argues that the currently popular propensity interpretation of fitness does not legitimize explanations in terms of natural selection, and that furthermore, (...) the biological fields which typically study the ways in which selection pressures originate in the organism/environment complex are not in fact part of the theory of natural selection at all. His foils in the first case are Robert Brandon, John Beatty and Susan Mills;2 on the second issue he is engaged in debate with Elliott Sober.3 We will see that, although the controversies are ostensibly about the interpretation of fitness, the issues, at bottom, involve the nature of scientific explanation. (shrink)

The question ‘Are there inherent differences among the phenomena studied by different sciences which require inherently different methodologies?’ has received considerable attention during the last century. Much of the debate has been fueled by logical positivism and logical empiricism, both of which embrace a commitment to the reduction of theories and the ultimate unity of science. This commitment presupposes that there are no inherent fundamental differences since any inherent differences would undermine the connected goals of reduction and unification. Hence, logical (...) positivists and logical empiricists have attempted to show that the supposed differences are illusory. For example, Hempel and Nagel both argued vigorously that there are no inherent differences. Their strategy was to analyze a purported difference and argue either that the feature responsible for the difference was not really present in the non-physical science or that it was after all present in the physical sciences as well. (shrink)

Different conceptions of scientific theories, such as the state spaces approach of Bas van Fraassen, the phase spaces approach of Frederick Suppe, the set-theoretical approach of Patrick Suppes, and the structuralist view of Joseph Sneed et al. are usually put together into one big family. In addition, the definite article is normally used, and thus we speak of the semantic conception of theories and of its different approaches . However, in The Semantic Conception of Theories and Scientific Realism , starting (...) from certain remarks already made in “Theory Structure” , Current Research in Philosophy of Science, East Lansing: Philosophy of Science Association, 1979, pp. 317–338), Frederick Suppe excludes the structuralist view as well as other “European” versions from the semantic conception of theories. In this paper I will critically examine the reasons put forward by Suppe for this decision and, later, I will provide a general characterization of the semantic family and of the structuralist view of theories in such a way as to justify the inclusion of the structuralist view as a member of this family. (shrink)

The paper sketches an account of explanatory practice in which explanations are viewed as answers to explanation-requiring questions. To avoid difficulties in previous proposals, the paper uses the structuralist account of theory structure, arguing that theories are complex and evolving entities formed around a conceptual core and a set of intended applications. The argument is that this view does better justice to theories which involve a number of different kinds of theory-elements to give narrative explanations. Theories are, among other things, (...) devices which can be used to turn explanation-requiring questions into a form which allows assessment of potential answers. Evolutionary theory, both in Darwin's and the modern synthetic forms, are used as examples. The view advanced is that modern evolutionary theory need not have a unique core to which other theories serve as subcontractors. (shrink)

Paul Thompson, John Beatty, and Elisabeth Lloyd argue that attempts to resolve certain conceptual issues within evolutionary biology have failed because of a general adherence to the received view of scientific theories. They maintain that such issues can be clarified and resolved when one adopts a semantic approach to theories. In this paper, I argue that such conceptual issues are just as problematic on a semantic approach. Such issues arise from the complexity involved in providing formal accounts of theoretical laws (...) and scientific explanations. That complexity is due to empirical and pragmatic considerations, not one's adherence to a particular formal approach to theories. This analysis raises a broader question. How can any formal account properly represent the complex nature of empirical phenomena? (shrink)

Susan Mills and John Beatty proposed a propensity interpretation of fitness (1979) to show that Darwinian explanations are not circular, but they did not address the critics' chief complaint that the principle of the survival of the fittest is either tautological or untestable. I show that the propensity interpretation cannot rescue the principle from the critics' charges. The critics, however, incorrectly assume that there is nothing more to Darwin's theory than the survival of the fittest. While Darwinians all scoff at (...) this assumption, they do not agree about what role, if any, this principle plays in Darwin's theory of natural selection. I argue that the principle has no place in Darwin's theory. His theory does include the idea that some organisms are fitter than others. But greater reproductive success is simply inferred from higher fitness. There is no reason to embody this inference in the form of a special principle of the survival of the fittest. (shrink)

The conflation of two fundamentally distinct issues has generated serious confusion in the philosophical and biological literature concerning the units of selection. The questions of how a unit of selection is defined, theoretically, is rarely distinguished from the question of how to determine the empirical accuracy of claims--either specific or general--concerning which unit(s) are undergoing selection processes. In this paper, I begin by refining a definition of the unit of selection, first presented by William Wimsatt, that is grounded in the (...) structure of natural selection models. I then explore the implications of this definition for empirical evaluation of group selection models. I examine an objection to Wimsatt’s definition raised by Elliott Sober, and I conclude by indicating how the proposed refined definition can clarify which sorts of empirical evidence could be brought to bear on group selection controversies. (shrink)

The semantic view of scientific theories has been defended as more adequate than the “received” view, especially with respect to biological theories (Beatty 1980, 1981; Thompson 1983). However, the semantic view has not been evaluated on its own terms. In this paper I first show how the theory of sociobiology propounded by E.O. Wilson (1975) can be understood on the semantic approach. I then discuss the criticism that Wilson’s theory is beset by the problem of unreliable generalizations. I suggest that (...) this problem results from the use of the model-building strategy in theory. I conclude that the problem is pressing enough to impugn the semantic view as an adequate account of sociobiological theory.According to proponents of the semantic view of theories, scientific theories function to specify a class of “models,” interpretations, or representations of their postulates. (shrink)

Benton Stidd has defended the position that punctuationists are not wrong about the inadequacy of the synthetic theory of evolution for explaining evolution. The thrust of his defense is that arguments to the contrary by Thompson involve a rational reconstruction along logical empiricist lines, which is insensitive to historical and social forces in a way that the Kuhnian Weltanschauung view that he espouses is not. I argue in this paper that Stidd has entirely misunderstood my arguments, that the soundness of (...) my arguments does not depend on acceptance of logical empiricism, and that Stidd fails to establish that punctuated equilibria is a new "paradigm". (shrink)