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  1. Acupuncture, incommensurability, and conceptual change.Paul Thagard & R. Zhu - 2003 - In Gale M. Sinatra & Paul R. Pintrich (eds.), Intentional conceptual change. Mahwah, N.J.: L. Erlbaum. pp. 79--102.
    This paper is an investigation of the degree of incommensurability between Western scientific medicine and traditional Chinese medicine, focusing on the practice and theory of acupuncture. We describe the structure of traditional Chinese medicine, oriented around such concepts as yin, yang, qi, and xing, and discuss how the conceptual and explanatory differences between Western medicine and traditional Chinese medicine generate impediments to their comparison and evaluation. We argue that the linguistic, conceptual, ontological, and explanatory impediments can to a large extent (...)
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  • Resources for Research on Analogy: A Multi-disciplinary Guide.Marcello Guarini, Amy Butchart, Paul Simard Smith & Andrei Moldovan - 2009 - Informal Logic 29 (2):84-197.
    Work on analogy has been done from a number of disciplinary perspectives throughout the history of Western thought. This work is a multidisciplinary guide to theorizing about analogy. It contains 1,406 references, primarily to journal articles and monographs, and primarily to English language material. classical through to contemporary sources are included. The work is classified into eight different sections (with a number of subsections). A brief introduction to each section is provided. Keywords and key expressions of importance to research on (...)
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  • Problems for Natural Selection as a Mechanism.Joyce C. Havstad - 2011 - Philosophy of Science 78 (3):512-523.
    Skipper and Millstein analyze natural selection and mechanism, concluding that natural selection is not a mechanism in the sense of the new mechanistic philosophy. Barros disagrees and provides his own account of natural selection as a mechanism. This discussion identifies a missing piece of Barros's account, attempts to fill in that piece, and reconsiders the revised account. Two principal objections are developed: one, the account does not characterize natural selection; two, the account is not mechanistic. Extensive and persistent variability causes (...)
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  • Function, selection, and construction in the brain.Justin Garson - 2012 - Synthese 189 (3):451-481.
    A common misunderstanding of the selected effects theory of function is that natural selection operating over an evolutionary time scale is the only functionbestowing process in the natural world. This construal of the selected effects theory conflicts with the existence and ubiquity of neurobiological functions that are evolutionary novel, such as structures underlying reading ability. This conflict has suggested to some that, while the selected effects theory may be relevant to some areas of evolutionary biology, its relevance to neuroscience is (...)
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  • Comments on Dennett from a cautious ally.Jonathan Bennett - 1993 - Behavioral and Brain Sciences 16 (2):381-385.
    In these notes, unadorned page numbers under 350 refer to Dennett (1987) - The Intentional Stance, hereafter referred to as Stance - and ones over 495 refer to Dennett (1988) - mostly to material by him but occasionally to remarks of his critics. Since the notes will focus on disagreements, I should say now that I am in Dennett’s camp and am deeply in debt to his work in the philosophy of mind, which I think is wider, deeper, more various (...)
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  • Natural selection as a mechanism.D. Benjamin Barros - 2008 - Philosophy of Science 75 (3):306-322.
    Skipper and Millstein (2005) argued that existing conceptions of mechanisms failed to "get at" natural selection, but left open the possibility that a refined conception of mechanisms could resolve the problems that they identified. I respond to Skipper and Millstein, and argue that while many of their points have merit, their objections can be overcome and that natural selection can be characterized as a mechanism. In making this argument, I discuss the role of regularity in mechanisms, and develop an account (...)
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  • The teleological notion of 'function'.Karen Neander - 1991 - Australasian Journal of Philosophy 69 (4):454 – 468.
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  • Functional analysis and proper functions.Paul E. Griffiths - 1993 - British Journal for the Philosophy of Science 44 (3):409-422.
    The etiological approach to ‘proper functions’ in biology can be strengthened by relating it to Robert Cummins' general treatment of function ascription. The proper functions of a biological trait are the functions it is assigned in a Cummins-style functional explanation of the fitness of ancestors. These functions figure in selective explanations of the trait. It is also argued that some recent etiological theories include inaccurate accounts of selective explanation in biology. Finally, a generalization of the notion of selective explanation allows (...)
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  • Error types.Douglas Allchin - 2001 - Perspectives on Science 9 (1):38-58.
    : Errors in science range along a spectrum from those relatively local to the phenomenon (usually easily remedied in the laboratory) to those more conceptually derived (involving theory or cultural factors, sometimes quite long-term). One may classify error types broadly as material, observational, conceptual or discoursive. This framework bridges philosophical and sociological perspectives, offering a basis for interfield discourse. A repertoire of error types also supports error analytics, a program for deepening reliability through strategies for regulating and probing error.
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  • Evolution, teleology, intentionality.Daniel C. Dennett - 1993 - Behavioral and Brain Sciences 16 (2):89-391.
    No response that was not as long and intricate as the two commentaries combined could do justice to their details, so what follows will satisfy nobody, myself included. I will concentrate on one issue discussed by both commentators: the relationship between evolution and teleological (or intentional) explanation. My response, in its brevity, may have just one virtue: it will confirm some of the hunches (or should I say suspicions) that these and other writers have entertained about my views. For more (...)
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  • From Analog to Digital Computing: Is Homo sapiens’ Brain on Its Way to Become a Turing Machine?Antoine Danchin & André A. Fenton - 2022 - Frontiers in Ecology and Evolution 10:796413.
    The abstract basis of modern computation is the formal description of a finite state machine, the Universal Turing Machine, based on manipulation of integers and logic symbols. In this contribution to the discourse on the computer-brain analogy, we discuss the extent to which analog computing, as performed by the mammalian brain, is like and unlike the digital computing of Universal Turing Machines. We begin with ordinary reality being a permanent dialog between continuous and discontinuous worlds. So it is with computing, (...)
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  • Philosophy of immunology.Bartlomiej Swiatczak & Alfred I. Tauber - 2020 - Stanford Encyclopedia of Philosophy 2020.
    Philosophy of immunology is a subfield of philosophy of biology dealing with ontological and epistemological issues related to the studies of the immune system. While speculative investigations and abstract analyses have always been part of immune theorizing, until recently philosophers have largely ignored immunology. Yet the implications for understanding the philosophical basis of organismal functions framed by immunity offer new perspectives on fundamental questions of biology and medicine. Developed in the context of history of medicine, theoretical biology, and medical anthropology, (...)
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  • A Generalized Selected Effects Theory of Function.Justin Garson - 2017 - Philosophy of Science 84 (3):523-543.
    I present and defend the generalized selected effects theory (GSE) of function. According to GSE, the function of a trait consists in the activity that contributed to its bearer’s differential reproduction, or differential retention, within a population. Unlike the traditional selected effects (SE) theory, it does not require that the functional trait helped its bearer reproduce; differential retention is enough. Although the core theory has been presented previously, I go significantly beyond those presentations by providing a new argument for GSE (...)
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  • How to Be a Function Pluralist.Justin Garson - 2018 - British Journal for the Philosophy of Science 69 (4):1101-1122.
    I distinguish two forms of pluralism about biological functions, between-discipline pluralism and within-discipline pluralism. Between-discipline pluralism holds that different theories of function are appropriate for different subdisciplines of biology and psychology. I provide reasons for rejecting this view. Instead, I recommend within-discipline pluralism, which emphasizes the plurality of function concepts at play within any given subdiscipline of biology and psychology.
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  • Schizophrenia and the Dysfunctional Brain.Justin Garson - 2010 - Journal of Cognitive Science 11:215-246.
    Scientists, philosophers, and even the lay public commonly accept that schizophrenia stems from a biological or internal ‘dysfunction.’ However, this assessment is typically accompanied neither by well-defined criteria for determining that something is dysfunctional nor empirical evidence that schizophrenia satisfies those criteria. In the following, a concept of biological function is developed and applied to a neurobiological model of schizophrenia. It concludes that current evidence does not warrant the claim that schizophrenia stems from a biological dysfunction, and, in fact, that (...)
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  • 15 Heterogeneous economic evolution: a different view on Darwinizing evolutionary economics.Jack Vromen - 2011 - In J. B. Davis & D. W. Hands (eds.), Elgar Companion to Recent Economic Methodology. Edward Elgar Publishers. pp. 341.
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  • (1 other version)Book Reviews. [REVIEW]Daniel S. Brooks - 2013 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 44 (1):235-245.
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  • Two Ways of Analogy: Extending the Study of Analogies to Mathematical Domains.Dirk Schlimm - 2008 - Philosophy of Science 75 (2):178-200.
    The structure-mapping theory has become the de-facto standard account of analogies in cognitive science and philosophy of science. In this paper I propose a distinction between two kinds of domains and I show how the account of analogies based on structure-preserving mappings fails in certain (object-rich) domains, which are very common in mathematics, and how the axiomatic approach to analogies, which is based on a common linguistic description of the analogs in terms of laws or axioms, can be used successfully (...)
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  • Thinking about evolutionary mechanisms: Natural selection.Robert Skipper & Roberta Millstein - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):327-347.
    This paper explores whether natural selection, a putative evolutionary mechanism, and a main one at that, can be characterized on either of the two dominant conceptions of mechanism, due to Glennan and the team of Machamer, Darden, and Craver, that constitute the “new mechanistic philosophy.” The results of the analysis are that neither of the dominant conceptions of mechanism adequately captures natural selection. Nevertheless, the new mechanistic philosophy possesses the resources for an understanding of natural selection under the rubric.
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  • Concepts of drift and selection in “the great snail debate” of the 1950s and early 1960s.Roberta L. Millstein - 2009 - In Joe Cain Michael Ruse (ed.), Descended from Darwin: Insights into the History of Evolutionary Studies, 1900-1970. American Philosophical Society.
    Recently, much philosophical discussion has centered on the best way to characterize the concepts of random drift and natural selection, and, in particular, whether selection and drift can be conceptually distinguished (Beatty, 1984; Brandon, 2005; Hodge, 1983, 1987; Millstein, 2002, 2005; Pfeifer, 2005; Shanahan, 1992; Stephens, 2004). These authors all contend, to a greater or lesser degree, that their concepts make sense of biological practice. So it should be instructive to see how the concepts of drift and selection were distinguished (...)
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  • An examination of some metaphorical contexts for biologically motivated computing.R. C. Paton, H. S. Nwana, M. J. R. Shave & T. J. M. Bench-Capon - 1994 - British Journal for the Philosophy of Science 45 (2):505-525.
    Biologically motivated computing seeks to transfer ideas from the biosciences to computer science. In seeking to make transfers it is helpful to be able to appreciate the metaphors which people use. This is because metaphors provide the context through which analogies and similes are made and by which many scientific models are constructed. As such, it is important for any rapidly evolving domain of knowledge to have developments accounted for in these terms. This paper seeks to provide one overview of (...)
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  • Wallace’s and Darwin’s natural selection theories.Santiago Ginnobili & Daniel Blanco - 2019 - Synthese 196 (3):991-1017.
    This work takes a stand on whether Wallace should be regarded as co-author of the theory of natural selection alongside Darwin as he is usually considered on behalf of his alleged essential contribution to the conception of the theory. It does so from a perspective unexplored thus far: we will argue for Darwin’s priority based on a rational reconstruction of the theory of natural selection as it appears in the writings of both authors. We show that the theory does not (...)
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  • (1 other version)Strategies for Discovering Mechanisms: Schema Instantiation, Modular Subassembly, Forward/Backward Chaining.Lindley Darden - 2002 - Philosophy of Science 69 (S3):S354-S365.
    Discovery proceeds in stages of construction, evaluation, and revision. Each of these stages is constrained by what is known or conjectured about what is being discovered. A new characterization of mechanism aids in specifying what is to be discovered when a mechanism is sought. Guidance in discovering mechanisms may be provided by the reasoning strategies of schema instantiation, modular subassembly, and forward/backward chaining. Examples are found in mechanisms in molecular biology, biochemistry, immunology, and evolutionary biology.
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  • (1 other version)Abstraction via generic modeling in concept formation in science.Nancy J. Nersessian - 2005 - Poznan Studies in the Philosophy of the Sciences and the Humanities 86 (1):117-144.
    Cases where analogy has played a significant role in the formation of a new scientific concept are well-documented. Yet, how is it that genuinely new representations can be constructed from existing representations? It is argued that the process of ‘generic modeling’ enables abstraction of features common to both the domain of the source of the analogy and of the target phenomena. The analysis focuses on James Clerk Maxwell's construction of the electromagnetic field concept. The mathematical representation Maxwell constructed turned out (...)
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  • A Type Hierarchy of Selection Processes for the Evaluation of Evolutionary Analogies.Barbara Gabriella Renzi - 2009 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 40 (2):311-336.
    In this paper I propose a type-hierarchy approach to provide an intersubjective framework for the evaluation of evolutionary analogies. This approach develops David Hull’s and others’ attempts to provide full generalisation for selection processes, in order to show that sociocultural development and, particularly, scientific change can be considered as an instance of Darwinian selection. I argue that the recent work by Eileen Cornell Way on type hierarchies can offer the kind of generalisation needed to solve the main problems that still (...)
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  • (1 other version)Rethinking mechanistic explanation.Stuart Glennan - 2002 - Proceedings of the Philosophy of Science Association 2002 (3):S342-353.
    Philosophers of science typically associate the causal-mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon's account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex-systems approach avoids certain (...)
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  • Towards a metaphorical biology.R. C. Paton - 1992 - Biology and Philosophy 7 (3):279-294.
    The metaphorical nature of biological language is examined and the use of metaphors for providing the linguistic context in which similarities and differences are made is described. Certain pervasive metaphors which are characterised by systemic properties are noted, and in order to provide some focus to the study, systemic metaphors associated with machine, text and organism are discussed. Other systemic metaphors such as society and circuit are also reported. Some details concerning interrelations between automaton and organism are presented in the (...)
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  • Pathways to biomedical discovery.Paul Thagard - 2003 - Philosophy of Science 70 (2):235-254.
    A biochemical pathway is a sequence of chemical reactions in a biological organism. Such pathways specify mechanisms that explain how cells carry out their major functions by means of molecules and reactions that produce regular changes. Many diseases can be explained by defects in pathways, and new treatments often involve finding drugs that correct those defects. This paper presents explanation schemas and treatment strategies that characterize how thinking about pathways contributes to biomedical discovery. It discusses the significance of pathways for (...)
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  • Selection and the extent of explanatory unification.Robert A. Skipper - 1999 - Philosophy of Science 66 (3):209.
    According to Philip Kitcher, scientific unification is achieved via the derivation of numerous scientific statements from economies of argument schemata. I demonstrate that the unification of selection phenomena across domains in which it is claimed to occur--evolutionary biology, immunology and, speculatively, neurobiology--is unattainable on Kitcher's view. I then introduce an alternative method for rendering the desired unification based on the concept of a mechanism schema. I conclude that the gain in unification provided by the alternative account suggests that Kitcher's view (...)
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  • Biological Purposes Beyond Natural Selection: Self-Regulation as a Source of Teleology1.Javier González de Prado & Cristian Saborido - forthcoming - Erkenntnis:1-20.
    Selected-effects theories provide the most popular account of biological teleology. According to these theories, the purpose of a trait is to do whatever it was selected for. The vast majority of selected-effects theories consider biological teleology to be introduced by natural selection. We want to argue, however, that natural selection is not the only relevant selective process in biology. In particular, our proposal is that biological regulation is a form of biological selection. So, those who accept selected-effects theories should recognize (...)
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  • (1 other version)Book Reviews: James A. Shapiro: Evolution. A View from the 21st Century FT Press: Upper Saddle River, N.J., 2011, 272 pp., $ 31.49, ISBN 978-0-13-278093-3 Gerhard Schurz: Evolution in Natur und Kultur Spektrum: Heidelberg 2011, 436 + XII pp., € 39.95, ISBN 978-3-8274-2665-9. [REVIEW]Daniel S. Brooks - 2013 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 44 (1):235-245.
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  • Handbook of Evolutionary Thinking in the Sciences.Thomas Heams, Philippe Huneman, Guillaume Lecointre & Marc Silberstein (eds.) - 2014 - Springer.
    The Darwinian theory of evolution is itself evolving and this book presents the details of the core of modern Darwinism and its latest developmental directions. The authors present current scientific work addressing theoretical problems and challenges in four sections, beginning with the concepts of evolution theory, its processes of variation, heredity, selection, adaptation and function, and its patterns of character, species, descent and life. The second part of this book scrutinizes Darwinism in the philosophy of science and its usefulness in (...)
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  • Strategies in the interfield discovery of the mechanism of protein synthesis.Lindley Darden & Carl Craver - 2002 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 33 (1):1-28.
    In the 1950s and 1960s, an interfield interaction between molecular biologists and biochemists integrated important discoveries about the mechanism of protein synthesis. This extended discovery episode reveals two general reasoning strategies for eliminating gaps in descriptions of the productive continuity of mechanisms: schema instantiation and forward chaining/backtracking. Schema instantiation involves filling roles in an overall framework for the mechanism. Forward chaining and backtracking eliminate gaps using knowledge about types of entities and their activities. Attention to mechanisms highlights salient features of (...)
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  • Selected effects and causal role functions in the brain: the case for an etiological approach to neuroscience.Justin Garson - 2011 - Biology and Philosophy 26 (4):547-565.
    Despite the voluminous literature on biological functions produced over the last 40 years, few philosophers have studied the concept of function as it is used in neuroscience. Recently, Craver (forthcoming; also see Craver 2001) defended the causal role theory against the selected effects theory as the most appropriate theory of function for neuroscience. The following argues that though neuroscientists do study causal role functions, the scope of that theory is not as universal as claimed. Despite the strong prima facie superiority (...)
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  • (1 other version)Abstraction via generic modeling in concept formation in science.Nancy J. Nersessian - 2002 - Mind and Society 3 (1):129-154.
    Cases where analogy has played a significant role in the formation of a new scientific concept are well-documented. Yet, how is it that genuinely new representations can be constructed from existing representations? It is argued that the process of ‘generic modeling’ enables abstraction of features common to both the domain of the source of the analogy and of the target phenomena. The analysis focuses on James Clerk Maxwell's construction of the electromagnetic field concept. The mathematical representation Maxwell constructed turned out (...)
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  • Dennett's intentions and Darwin's legacy.Jon Ringen - 1993 - Behavioral and Brain Sciences 16 (2):386-389.
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  • Natural selection through survival alone, and the possibility of Gaia.W. Ford Doolittle - 2014 - Biology and Philosophy 29 (3):415-423.
    Here I advance two related evolutionary propositions. (1) Natural selection is most often considered to require competition between reproducing “individuals”, sometimes quite broadly conceived, as in cases of clonal, species or multispecies-community selection. But differential survival of non-competing and non-reproducing individuals will also result in increasing frequencies of survival-promoting “adaptations” among survivors, and thus is also a kind of natural selection. (2) Darwinists have challenged the view that the Earth’s biosphere is an evolved global homeostatic system. Since there is only (...)
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  • (1 other version)Strategies for discovering mechanisms: Schema instantiation, modular subassembly, forward/backward chaining.Lindley Darden - 2002 - Proceedings of the Philosophy of Science Association 2002 (3):S354-S365.
    Discovery proceeds in stages of construction, evaluation, and revision. Each of these stages is constrained by what is known or conjectured about what is being discovered. A new characterization of mechanism aids in specifying what is to be discovered when a mechanism is sought. Guidance in discovering mechanisms may be provided by the reasoning strategies of schema instantiation, modular subassembly, and forward/backward chaining. Examples are found in mechanisms in molecular biology, biochemistry, immunology, and evolutionary biology.
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  • Evolutionary epistemology as an overlapping, interlevel theory.Valerie Gray Hardcastle - 1993 - Biology and Philosophy 8 (2):173-192.
    I examine the branch of evolutionary epistemology which tries to account for the character of cognitive mechanisms in animals and humans by extending the biological theory of evolution to the neurophysiological substrates of cognition. Like Plotkin, I construe this branch as a struggling science, and attempt to characterize the sort of theory one might expect to find this truly interdisciplinary endeavor, an endeavor which encompasses not only evolutionary biology, cognitive psychology, and developmental neuroscience, but also and especially, the computational modeling (...)
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  • Natural selection and the struggle for existence.James G. Lennox & Bradley E. Wilson - 1994 - Studies in History and Philosophy of Science Part A 25 (1):65-80.
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  • Feminist Philosophy of Science.Lynn Hankinson Nelson - 2002 - In Peter K. Machamer & Michael Silberstein (eds.), The Blackwell guide to the philosophy of science. Malden, Mass.: Blackwell. pp. 312–331.
    This chapter contains sections titled: Highlights of Past Literature Current Work Future Work.
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  • The mechanical philosophy, mechanisms, and values: Marcus P. Adams, Zvi Biener, Uljana Feest and Jacqueline A. Sullivan : Eppur si muove: Doing history and philosophy of science with Peter Machamer: A collection of essays in honor of Peter Machamer. The Western Ontario Series in Philosophy of Science 81. Cham, Switzerland: Springer International, 2017, xiv+208pp, €112.49 HB, €74.96 eBook.Lindley Darden - 2017 - Metascience 27 (1):55-58.
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  • Learning and selection.Justine Kingsbury - 2008 - Biology and Philosophy 23 (4):493-507.
    Are learning processes selection processes? This paper takes a slightly modified version of the account of selection presented in Hull et al. (Behav Brain Sci 24:511–527, 2001) and asks whether it applies to learning processes. The answer is that although some learning processes are selectional, many are not. This has consequences for teleological theories of mental content. According to these theories, mental states have content in virtue of having proper functions, and they have proper functions in virtue of being the (...)
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  • Generalizations in Biology.Lindley Darden - 1996 - Studies in History and Philosophy of Science Part A 27 (3):409-419.
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  • The return of the replicator: What is philosophically significant in a general account of replication and selection? [REVIEW]Bence Nanay - 2002 - Biology and Philosophy 17 (1):109-121.
    The aim of this paper is to outline a typologyof selection processes, and show that differentsub-categories have different explanatorypower. The basis of this typology of selectionprocesses is argued to be the difference ofreplication processes involved in them. Inorder to show this, I argue that: 1.Replication is necessary for selection and 2.Different types of replication lead todifferent types of selection. Finally, it isargued that this typology is philosophicallysignificant, since it contrasts cases ofselection (on the basis of the replicationprocesses involved in them) (...)
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  • Causal Equations without Ceteris Paribus Clauses.Peter Gildenhuys - 2010 - Philosophy of Science 77 (4):608-632.
    Some writers have urged that evolutionary theory produces generalizations that hold only ceteris paribus, that is, provided “everything else is equal.” Others have claimed that all laws in the special sciences, or even all laws in science generally, hold only ceteris paribus. However, if we lack a way to determine when everything else really is equal, hedging generalizations with the phrase ceteris paribus renders those generalizations vacuous. I propose a solution to this problem for the case of causal equations from (...)
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  • Darwinian Overtones: Niels K. Jerne and the Origin of the Selection Theory of Antibody Formation. [REVIEW]Thomas Söderqvist - 1994 - Journal of the History of Biology 27 (3):481 - 529.
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  • The evolution of conceptual systems in science.David L. Hull - 1992 - World Futures 34 (1):67-82.
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