The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

Nucleic Acids Research 46 (D1):D1168–D1180 (2018)
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The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms.
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First archival date: 2018-08-30
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The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration.Smith, Barry; Ashburner, Michael; Rosse, Cornelius; Bard, Jonathan; Bug, William; Ceusters, Werner; Goldberg, Louis J.; Eilbeck, Karen; Ireland, Amelia; Mungall, Christopher J.; Leontis, Neocles & Others,
The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Cooper, Laurel; Walls, Ramona; Elser, Justin; Gandolfo, Maria A.; Stevenson, Dennis W.; Smith, Barry & Others,
Ontologies as Integrative Tools for Plant Science.Walls, Ramona; Athreya, Balaji; Cooper, Laurel; Elser, Justin; Gandolfo, Maria A.; Jaiswal, Pankaj; Mungall, Christopher J.; Preece, Justin; Rensing, Stefan; Smith, Barry & Stevenson, Dennis W.
Gene Ontology Annotations: What They Mean and Where They Come From.Hill David, P.; Smith, Barry; McAndrews-Hill Monica, S. & Blake Judith, A.

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