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  1. Systems biology and the integration of mechanistic explanation and mathematical explanation.Ingo Brigandt - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):477-492.
    The paper discusses how systems biology is working toward complex accounts that integrate explanation in terms of mechanisms and explanation by mathematical models—which some philosophers have viewed as rival models of explanation. Systems biology is an integrative approach, and it strongly relies on mathematical modeling. Philosophical accounts of mechanisms capture integrative in the sense of multilevel and multifield explanations, yet accounts of mechanistic explanation have failed to address how a mathematical model could contribute to such explanations. I discuss how mathematical (...)
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  • The cognitive neuroscience revolution.Worth Boone & Gualtiero Piccinini - 2016 - Synthese 193 (5):1509-1534.
    We outline a framework of multilevel neurocognitive mechanisms that incorporates representation and computation. We argue that paradigmatic explanations in cognitive neuroscience fit this framework and thus that cognitive neuroscience constitutes a revolutionary break from traditional cognitive science. Whereas traditional cognitive scientific explanations were supposed to be distinct and autonomous from mechanistic explanations, neurocognitive explanations aim to be mechanistic through and through. Neurocognitive explanations aim to integrate computational and representational functions and structures across multiple levels of organization in order to explain (...)
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  • Mechanistic Abstraction.Worth Boone & Gualtiero Piccinini - 2016 - Philosophy of Science 83 (5):686-697.
    We provide an explicit taxonomy of legitimate kinds of abstraction within constitutive explanation. We argue that abstraction is an inherent aspect of adequate mechanistic explanation. Mechanistic explanations—even ideally complete ones—typically involve many kinds of abstraction and therefore do not require maximal detail. Some kinds of abstraction play the ontic role of identifying the specific complex components, subsets of causal powers, and organizational relations that produce a suitably general phenomenon. Therefore, abstract constitutive explanations are both legitimate and mechanistic.
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  • The hodgkin‐huxley equations and the concrete model: Comments on Craver, Schaffner, and Weber.Jim Bogen - 2008 - Philosophy of Science 75 (5):1034-1046.
    I claim that the Hodgkin‐Huxley (HH) current equations owe a great deal of their importance to their role in bringing results from experiments on squid giant action preparations to bear on the study of the action potential in other neurons in other in vitro and in vivo environments. I consider ideas from Weber and Craver about the role of Coulomb’s and other fundamental equations in explaining the action potential and in HH’s development of their equations. Also, I offer an embellishment (...)
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  • Regularities and causality; generalizations and causal explanations.Jim Bogen - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):397-420.
    Machamer, Darden, and Craver argue that causal explanations explain effects by describing the operations of the mechanisms which produce them. One of this paper’s aims is to take advantage of neglected resources of Mechanism to rethink the traditional idea that actual or counterfactual natural regularities are essential to the distinction between causal and non-causal co-occurrences, and that generalizations describing natural regularities are essential components of causal explanations. I think that causal productivity and regularity are by no means the same thing, (...)
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  • Analysing causality: The opposite of counterfactual is factual.Jim Bogen - 2002 - International Studies in the Philosophy of Science 18 (1):3 – 26.
    Using Jim Woodward's Counterfactual Dependency account as an example, I argue that causal claims about indeterministic systems cannot be satisfactorily analysed as including counterfactual conditionals among their truth conditions because the counterfactuals such accounts must appeal to need not have truth values. Where this happens, counterfactual analyses transform true causal claims into expressions which are not true.
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  • Explanation: a mechanist alternative.William Bechtel & Adele Abrahamsen - 2005 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36 (2):421-441.
    Explanations in the life sciences frequently involve presenting a model of the mechanism taken to be responsible for a given phenomenon. Such explanations depart in numerous ways from nomological explanations commonly presented in philosophy of science. This paper focuses on three sorts of differences. First, scientists who develop mechanistic explanations are not limited to linguistic representations and logical inference; they frequently employ diagrams to characterize mechanisms and simulations to reason about them. Thus, the epistemic resources for presenting mechanistic explanations are (...)
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  • Minimal Model Explanations.Robert W. Batterman & Collin C. Rice - 2014 - Philosophy of Science 81 (3):349-376.
    This article discusses minimal model explanations, which we argue are distinct from various causal, mechanical, difference-making, and so on, strategies prominent in the philosophical literature. We contend that what accounts for the explanatory power of these models is not that they have certain features in common with real systems. Rather, the models are explanatory because of a story about why a class of systems will all display the same large-scale behavior because the details that distinguish them are irrelevant. This story (...)
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  • Idealization and modeling.Robert W. Batterman - 2009 - Synthese 169 (3):427-446.
    This paper examines the role of mathematical idealization in describing and explaining various features of the world. It examines two cases: first, briefly, the modeling of shock formation using the idealization of the continuum. Second, and in more detail, the breaking of droplets from the points of view of both analytic fluid mechanics and molecular dynamical simulations at the nano-level. It argues that the continuum idealizations are explanatorily ineliminable and that a full understanding of certain physical phenomena cannot be obtained (...)
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  • Asymptotics and the role of minimal models.Robert W. Batterman - 2002 - British Journal for the Philosophy of Science 53 (1):21-38.
    A traditional view of mathematical modeling holds, roughly, that the more details of the phenomenon being modeled that are represented in the model, the better the model is. This paper argues that often times this ‘details is better’ approach is misguided. One ought, in certain circumstances, to search for an exactly solvable minimal model—one which is, essentially, a caricature of the physics of the phenomenon in question.
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  • The Completeness of Mechanistic Explanations.Tudor M. Baetu - 2015 - Philosophy of Science 82 (5):775-786.
    The paper discusses methodological guidelines for evaluating mechanistic explanations. According to current accounts, a satisfactory mechanistic explanation should include all of the relevant features of the mechanism, its component entities and activities, and their properties and organization, as well as exhibit productive continuity. It is not specified, however, how this kind of mechanistic completeness can be demonstrated. I argue that parameter sufficiency inferences based on mathematical model simulations provide a way of determining whether a mechanism capable of producing the phenomenon (...)
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  • The Dappled World: A Study of the Boundaries of Science.Nancy Cartwright - 2001 - Erkenntnis 54 (3):411-415.
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  • Discovery and explanation in biology and medicine.Kenneth F. Schaffner - 1993 - Chicago: University of Chicago Press.
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  • Minnesota studies in the philosophy of science Vol. XIII: Scientific Explanation.Philip Kitcher & Wesley C. Salmon (eds.) - 1989 - MINNEAPOLIS: UNIVERSITY OF MINNESOTA PRESS.
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  • Simulation and Similarity: Using Models to Understand the World.Michael Weisberg - 2013 - New York, US: Oxford University Press.
    one takes to be the most salient, any pair could be judged more similar to each other than to the third. Goodman uses this second problem to showthat there can be no context-free similarity metric, either in the trivial case or in a scientifically ...
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  • Explaining the brain: mechanisms and the mosaic unity of neuroscience.Carl F. Craver - 2007 - New York : Oxford University Press,: Oxford University Press, Clarendon Press.
    Carl Craver investigates what we are doing when we sue neuroscience to explain what's going on in the brain.
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  • The Dappled World: A Study of the Boundaries of Science.Nancy Cartwright - 1999 - New York, NY: Cambridge University Press.
    It is often supposed that the spectacular successes of our modern mathematical sciences support a lofty vision of a world completely ordered by one single elegant theory. In this book Nancy Cartwright argues to the contrary. When we draw our image of the world from the way modern science works - as empiricism teaches us we should - we end up with a world where some features are precisely ordered, others are given to rough regularity and still others behave in (...)
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  • 4 decades of scientific explanation.Wesley C. Salmon - 1989 - Minnesota Studies in the Philosophy of Science 13:3-219.
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  • Four Decades of Scientific Explanation.Wesley C. Salmon & Anne Fagot-Largeault - 1989 - History and Philosophy of the Life Sciences 16 (2):355.
    As Aristotle stated, scientific explanation is based on deductive argument--yet, Wesley C. Salmon points out, not all deductive arguments are qualified explanations. The validity of the explanation must itself be examined. _Four Decades of Scientific Explanation_ provides a comprehensive account of the developments in scientific explanation that transpired in the last four decades of the twentieth century. It continues to stand as the most comprehensive treatment of the writings on the subject during these years. Building on the historic 1948 essay (...)
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  • Reasoning in biological discoveries.Lindley Darden - manuscript
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  • The Ontic Account of Scientific Explanation.Carl F. Craver - 2014 - In Marie I. Kaiser, Oliver R. Scholz, Daniel Plenge & Andreas Hüttemann (eds.), Explanation in the Special Sciences: The Case of Biology and History. Springer Verlag. pp. 27-52.
    According to one large family of views, scientific explanations explain a phenomenon (such as an event or a regularity) by subsuming it under a general representation, model, prototype, or schema (see Bechtel, W., & Abrahamsen, A. (2005). Explanation: A mechanist alternative. Studies in History and Philosophy of Biological and Biomedical Sciences, 36(2), 421–441; Churchland, P. M. (1989). A neurocomputational perspective: The nature of mind and the structure of science. Cambridge: MIT Press; Darden (2006); Hempel, C. G. (1965). Aspects of scientific (...)
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  • Explanation in Neurobiology: An Interventionist Perspective.James Woodward - unknown
    This paper employs an interventionist framework to elucidate some issues having to do with explanation in neurobiology and with the differences between mechanistic and non-mechanistic explanations.
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  • Models as Mediating Instruments.Margaret Morrison & Mary S. Morgan - 1999 - In Mary S. Morgan & Margaret Morrison (eds.), Models as Mediators: Perspectives on Natural and Social Science. Cambridge University Press.
    Morrison and Morgan argue for a view of models as 'mediating instruments' whose role in scientific theorising goes beyond applying theory. Models are partially independent of both theories and the world. This autonomy allows for a unified account of their role as instruments that allow for exploration of both theories and the world.
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  • Why-Questions.Sylvain Bromberger - 1966 - In Robert G. Colodny (ed.), Mind and Cosmos -- Essays in Contemporary Science and Philosophy. University of Pittsburgh Press. pp. 86--111.
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  • Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - British Journal for the Philosophy of Science 46 (4):621-623.
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  • Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - Journal of the History of Biology 28 (1):172-174.
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  • Articulation of Parts Explanation in Biology and the Rational Search for Them.Stuart A. Kauffman - 1970 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1970:257 - 272.
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  • Mental mechanisms: Philosophical perspectives on the sciences of cognition and the brain.William P. Bechtel - manuscript
    1. The Naturalistic Turn in Philosophy of Science 2. The Framework of Mechanistic Explanation: Parts, Operations, and Organization 3. Representing and Reasoning About Mechanisms 4. Mental Mechanisms: Mechanisms that Process Information 5. Discovering Mental Mechanisms 6 . Summary.
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