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Switch to: References
Citations of:
Simulation and Similarity: Using Models to Understand the World
New York, US: Oxford University Press (2013)
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Conservation biology emerged as an organized academic discipline in the United States in the 1980s though much of its theoretical framework was originally developed in Australia. Significant differences of approach in the two traditions were resolved in the late 1990s through the formulation of a consensus framework for the design and adaptive management of conservation area networks. This entry presents an outline of that framework along with a critical analysis of conceptual issues concerning the four theoretical problems that emerge from (...) |
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Pictures are 2D surfaces designed to elicit 3D-scene-representing experiences from their viewers. In this essay, I argue that philosophers have tended to underestimate the relevance of research in vision science to understanding the nature of pictorial experience. Both the deeply entrenched methodology of virtual psychophysics as well as empirical studies of pictorial space perception provide compelling support for the view that pictorial experience and seeing face-to-face are experiences of the same psychological, explanatory kind. I also show that an empirically informed (...) |
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This article discusses minimal model explanations, which we argue are distinct from various causal, mechanical, difference-making, and so on, strategies prominent in the philosophical literature. We contend that what accounts for the explanatory power of these models is not that they have certain features in common with real systems. Rather, the models are explanatory because of a story about why a class of systems will all display the same large-scale behavior because the details that distinguish them are irrelevant. This story (...) |
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In this essay, I critically evaluate components of Michael Weisberg’s approach to models and modeling in his book Simulation and Similarity. First, I criticize his account of the ontology of models and mathematics. Second, I respond to his objections to fictionalism regarding models arguing that they fail. Third, I sketch a deflationary approach to models that retains many elements of his account but avoids the inflationary commitments. |
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Many biological investigations are organized around a small group of species, often referred to as ‘model organisms’, such as the fruit fly Drosophila melanogaster. The terms ‘model’ and ‘modelling’ also occur in biology in association with mathematical and mechanistic theorizing, as in the Lotka–Volterra model of predator-prey dynamics. What is the relation between theoretical models and model organisms? Are these models in the same sense? We offer an account on which the two practices are shown to have different epistemic characters. (...) |
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This article reviews the recent literature on idealization, specifically idealization in the course of scientific modeling. We argue that idealization is not a unified concept and that there are three different types of idealization: Galilean, minimalist, and multiple models, each with its own justification. We explore the extent to which idealization is a permanent feature of scientific representation and discuss its implications for debates about scientific realism. |
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Experimental modeling in biology involves the use of living organisms (not necessarily so-called "model organisms") in order to model or simulate biological processes. I argue here that experimental modeling is a bona fide form of scientific modeling that plays an epistemic role that is distinct from that of ordinary biological experiments. What distinguishes them from ordinary experiments is that they use what I call "in vivo representations" where one kind of causal process is used to stand in for a physically (...) |
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Selectionist evolutionary theory has often been faulted for not making novel predictions that are surprising, risky, and correct. I argue that it in fact exhibits the theoretical virtue of predictive capacity in addition to two other virtues: explanatory unification and model fitting. Two case studies show the predictive capacity of selectionist evolutionary theory: parallel evolutionary change in E. coli, and the origin of eukaryotic cells through endosymbiosis. |
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The practice of science appears to involve “model-talk”. Scientists, one thinks, are in the business of giving accounts of reality. Scientists, in the process of furnishing such accounts, talk about what they call “models”. Philosophers of science have inspected what this talk of models suggests about how scientific theories manage to represent reality. There are, it seems, at least three distinct philosophical views on the role of scientific models in science’s portrayal of reality: the abstractionist view, the indirect fictionalist view, (...) |
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This paper provides an account of mid-level models, which calibrate highly theoretical agent-based models of scientific communities by incorporating empirical information from real-world systems. As a result, these models more closely correspond with real-world communities, and are better suited for informing policy decisions than extant how-possibly models. I provide an exemplar of a mid-level model of science funding allocation that incorporates bibliometric data from scientific publications and data generated from empirical studies of peer review into an epistemic landscape model. The (...) |
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The present thesis explores some metaphysical issues concerning biochemical kinds and the relations between chemical and biological properties and phenomena. The main result of this thesis is that there is something sui generis about biochemical kinds. This result is motivated by two theoretical steps. The first is characterising biochemical functions as weakly emergent from the chemical structure [Chapter 3, Chapter 6]. The second is via an account for which biochemical kinds are natural categories [Chapter 4, Chapter 7]. The thesis comprises (...) |
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Understanding is an ability manifested by grasping relations of a phenomenon and articulating new explanations. Hence, scientific understanding is inextricably intertwined with and not possible without explanation, and understanding is not a type of propositional knowledge. Anna Elisabeth Höhl provides a novel philosophical account of scientific understanding by developing and defending necessary and sufficient conditions for the understanding that scientists achieve of the phenomena they are researching. This account of scientific understanding is based on and supported by a detailed investigation (...) |
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Science and fiction seem to lie at opposite ends of the cognitive-epistemic spectrum. The former is typically seen as the study of hard, real-world facts in a rigorous manner. The latter is treated as an instrument of play and recreation, dealing in figments of the imagination. Initial appearances notwithstanding, several central features of scientific modeling in fact suggest a close connection with the imagination and recent philosophers have developed detailed accounts of models that treat them, in one way or another, (...) |
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From Plato to the present day, political theorists have used models of idealistic societies to think about politics. How can these idealistic models inform our thinking about political life in our non-ideal world? Not, as many political theorists have hoped, by providing normative guidance -- by showing us how things should be or where we should go. Even still, we can use these models to interpret the concepts we depend on to explain and evaluate political behavior and institutions, thereby sharpening (...) |
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This paper examines a looming reproducibility crisis in the core of the hard sciences. Namely, it concentrates on molecular modeling and simulation (MMS), a family of methods that predict properties of substances through computing interactions on a molecular level and that is widely popular in physics, chemistry, materials science, and engineering. The paper argues that in order to make quantitative predictions, sophisticated models are needed which have to be evaluated with complex simulation procedures that amalgamate theoretical, technological, and social factors (...) |
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Philosophers of logic are particularly interested in understanding the aims, epistemology, and methodology of logic. This raises the question of how the philosophy of logic should go about these enquires. According to the practice-based approach, the most reliable method we have to investigate the methodology and epistemology of a research field is by considering in detail the activities of its practitioners. This holds just as true for logic as it does for the recognised empirical and abstract sciences. If we wish (...) |
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Historically left to the margins, the topics of imagination and creativity have gained prominence in philosophy of science, challenging the once dominant distinction between ‘context of discovery’ and ‘context of justification’. The aim of this chapter is to explore imagination and creativity starting from issues within contemporary philosophy of science, making connections to these topics in other domains along the way. It discusses the recent literature on the role of imagination in models and thought experiments, and their comparison with fictions. (...) |
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Le but de cet article est d'examiner le rôle joué par les valeurs dans les activités de représentation en science, notamment la construction ou utilisation de modèles, en distinguant représentation concrète et abstraite. Un modèle hiérarchique est proposé. La conclusion est que l'influence des valeurs sociales dans la représentation scientifique dépend du niveau d'abstraction considéré, et qu'elle n'est problématique que quand des valeurs locales sont considérées pour évaluer des représentations plus générales. |
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Philosophy strives to give us a firmer hold on our concepts. But what about their hold on us? Why place ourselves under the sway of a concept and grant it the authority to shape our thought and conduct? Another conceptualization would carry different implications. What makes one way of thinking better than another? This book develops a framework for concept appraisal. Its guiding idea is that to question the authority of concepts is to ask for reasons of a special kind: (...) |
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Research in pharmacogenomics and precision medicine has recently introduced the concept of Polygenic Scores (PGSs), namely, indexes that aggregate the effects that many genetic variants are predicted to have on individual disease risk. The popularity of PGSs is increasing rapidly, but surprisingly little attention has been paid to the idealisations they make about phenotypic development. Indeed, PGSs rely on quantitative genetics models and methods, which involve considerable theoretical assumptions that have been questioned on various grounds. This comes with epistemological and (...) |
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One central aim of science is to provide explanations of natural phenomena. What role(s) does mathematics play in achieving this aim? How does mathematics contribute to the explanatory power of science? Rules to Infinity defends the thesis, common though perhaps inchoate among many members of the Vienna Circle, that mathematics contributes to the explanatory power of science by expressing conceptual rules, rules which allow the transformation of empirical descriptions. Mathematics should not be thought of as describing, in any substantive sense, (...) |
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This paper explores the epistemological challenges in using computer simulations for two distinct goals: explanation via hypothesis-testing and prediction. It argues that each goal requires different strategies for justifying inferences drawn from simulation results due to different practical and conceptual constraints. The paper identifies unique and shared strategies researchers employ to increase confidence in their inferences for each goal. For explanation via hypothesis-testing, researchers need to address the underdetermination, interpretability, and attribution challenges. In prediction, the emphasis is on the model's (...) |
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Genealogies of belief have dominated recent philosophical discussions of genealogical debunking at the expense of genealogies of concepts, which has in turn focused attention on genealogical debunking in an epistemological key. As I argue in this paper, however, this double focus encourages an overly narrow understanding of genealogical debunking. First, not all genealogical debunking can be reduced to the debunking of beliefs—concepts can be debunked without debunking any particular belief, just as beliefs can be debunked without debunking the concepts in (...) |
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The third issue of the Journal for the Philosophy of Language, Mind and the Arts is centered on a series of questions related to the nature of images. What properties characterize them? Do they exist also in our minds? What relationship do they have with phenomena such as perception, memory, language and interpretation? The authors participating in this issue have been asked to answer these and other questions starting from and in dialogue with the two philosophical perspectives that have most (...) |
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Scientific research is constrained by limited resources, so it is imperative that it be conducted efficiently. This paper introduces the notion of epistemic expression, a kind of representation that expedites the solution of research problems. Epistemic expressions are representations that (i) contain information in a way that enables more reliable information to place the most stringent constraints on possible solutions and (ii) make new information readily extractible by biasing the search through that space. I illustrate these conditions using historical and (...) |
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Among the many functions of models, explanation is central to the functioning and aims of science. However, the discussions surrounding modeling and explanation in philosophy have largely remained separate from each other. This chapter seeks to bridge the gap by focusing on the puzzle of model-based explanation, asking how different philosophical accounts answer the following question: if idealizations and fictions introduce falsehoods into models, how can idealized and fictional models provide true explanations? The chapter provides a selective and critical overview (...) |
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Naturalism in the philosophy of science has proceeded differently than the familiar forms of meta-philosophical naturalism in other sub-fields, taking its cues from “science as we know it” (Cartwright in The Dappled World, Oxford University Press, Oxford, 1999, p. 1) rather than from a philosophical conception of “the Scientific Image.” Its primary focus is scientific practice, and its philosophical analyses are complementary and accountable to empirical studies of scientific work. I argue that naturalistic philosophy of science is nevertheless criterial for (...) |
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The practice of scientific modelling often resorts to hypothetical, false, idealised, targetless, partial, generalised, and other types of modelling that appear to have at least partially non-actual targets. In this paper, I will argue that we can avoid a commitment to non-actual targets by sketching a framework where models are understood as having networks of possibilities as their targets. This raises a further question: what are the truthmakers for the modal claims that we can derive from models? I propose that (...) |
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Phylogenetic models traditionally represent the history of life as having a strictly-branching tree structure. However, it is becoming increasingly clear that the history of life is often not strictly-branching; lateral gene transfer, endosymbiosis, and hybridization, for example, can all produce lateral branching events. There is thus motivation to allow phylogenetic models to have a reticulate structure. One proposal involves the reconciliation of genealogical discordance. Briefly, this method uses patterns of disagreement – discordance – between trees of different genes to add (...) |
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Many philosophers have drawn parallels between scientific models and fictions. In this paper I will be concerned with a recent version of the analogy, which compares models to the imagined characters of fictional literature. Though versions of the position differ, the shared idea is that modeling essentially involves imagining concrete systems analogously to the way that we imagine characters and events in response to works of fiction. Advocates of this view argue that imagining concrete systems plays an ineliminable role in (...) |
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Deep learning (DL) has become increasingly central to science, primarily due to its capacity to quickly, efficiently, and accurately predict and classify phenomena of scientific interest. This paper seeks to understand the principles that underwrite scientists’ epistemic entitlement to rely on DL in the first place and argues that these principles are philosophically novel. The question of this paper is not whether scientists can be justified in trusting in the reliability of DL. While today’s artificial intelligence exhibits characteristics common to (...) |
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Richard Levins’s (Am Sci 54(4):421–431, 1966) paper sets a landmark for the significance of scientific model-making in biology. Colombo and Palacios (Biol Philos 36(5):1–26. 10.1007/s10539-021-09818-x, 2021) have recently built their critique of the explanatory power of the Free Energy Principle on Levins’s insight into the relationship between generality, realism, and precision. This paper addresses the issue of the plausibility of biological explanations that are grounded in the Free Energy Principle (FEP) and deals with the question of the realist fortitude of (...) |
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Thought experiments, models, diagrams, computer simulations, and metaphors can all be understood as tools of the imagination. While these devices are usually treated separately in philosophy of science, this paper provides a unified account according to which tools of the imagination are epistemically good insofar as they improve scientific imaginings. Improving scientific imagining is characterized in terms of epistemological consequences: more improvement means better consequences. A distinction is then drawn between tools being good in retrospect, at the time, and in (...) |
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Sometimes, scientific models are either intended to or plausibly interpreted as representing nonactual but possible targets. Call this “hypothetical modeling”. This paper raises two epistemological challenges concerning hypothetical modeling. To begin with, I observe that given common philosophical assumptions about the scope of objective possibility, hypothetical models are fallible with respect to what is objectively possible. There is thus a need to distinguish between accurate and inaccurate hypothetical modeling. The first epistemological challenge is that no account of the epistemology of (...) |
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There has been much criticism of the idea that Friston's free-energy principle can unite the life and mind sciences. Here, we argue that perhaps the greatest problem for the totalizing ambitions of its proponents is a failure to recognize the importance of evolutionary dynamics and to provide a convincing adaptive story relating free-energy minimization to organismal fitness. |
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I argue that mathematical representations can have heuristic power since their construction can be ampliative. To this end, I examine how a representation introduces elements and properties into the represented object that it does not contain at the beginning of its construction, and how it guides the manipulations of the represented object in ways that restructure its components by gradually adding new pieces of information to produce a hypothesis in order to solve a problem.In addition, I defend an ‘inferential’ approach (...) |
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One claim found in the received historiography of the biometrical school (comprised primarily of Francis Galton, Karl Pearson, and W. F. R. Weldon) is that one of the biometricians' great flaws was their inability to look past their population-focused, statistical, gradualist understanding of evolutionary change – which led, in part, to their ignoring developments in cellular biology around 1900. I will argue, on the contrary, that the work of the biometricians was, from its earliest days, fundamentally concerned with connections between (...) |
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Agent-based modelling has become a well-established method in social epistemology and philosophy of science but the question of what kind of explanations these models provide remains largely open. This paper is dedicated to this issue. It starts by distinguishing between real-world phenomena, real-world possibilities, and logical possibilities as different kinds of targets which agent-based models can represent. I argue that models representing the former two kinds provide how-actually explanations or causal how-possibly explanations. In contrast, models that represent logical possibilities provide (...) |
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Deterrence is the backbone of military strategy. Dissuading an opponent from taking a specific action by threat of violence is the definition of deterrence. From the outset of the Cold War there has been a strong link between the study of deterrence and game theoretic analysis. There are compelling epistemic reasons for studying deterrence as a game. By doing so, the strategic interaction between actors is placed at the centre of the analysis, mapping the possible outcomes and revealing the strategies (...) |
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The predominance of machine learning based techniques in cognitive neuroscience raises a host of philosophical and methodological concerns. Given the messiness of neural activity, modellers must make choices about how to structure their raw data to make inferences about encoded representations. This leads to a set of standard methodological assumptions about when abstraction is appropriate in neuroscientific practice. Yet, when made uncritically these choices threaten to bias conclusions about phenomena drawn from data. Contact between the practices of multivariate pattern analysis (...) |
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Computational modeling should play a central role in philosophy. In this introduction to our topical collection, we propose a small topology of computational modeling in philosophy in general, and show how the various contributions to our topical collection fit into this overall picture. On this basis, we describe some of the ways in which computational models from other disciplines have found their way into philosophy, and how the principles one found here still underlie current trends in the field. Moreover, we (...) |
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It has been argued that ethical frameworks for data science often fail to foster ethical behavior, and they can be difficult to implement due to their vague and ambiguous nature. In order to overcome these limitations of current ethical frameworks, we propose to integrate the analysis of the connections between technical choices and sociocultural factors into the data science process, and show how these connections have consequences for what data subjects can do, accomplish, and be. Using healthcare as an example, (...) |
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Scientific realism is a thesis about the success of science. Most traditionally: science has been so successful at prediction and guiding action because its best theories are true (or approximately true or increasing in their degree of truth). If science is in the business of doing its best to generate true theories, then we should turn to those theories for explanatory knowledge, predictions, and guidance of our actions and decisions. Views that are popular in contemporary philosophy of science about scientific (...) |
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Disagreement about how best to think of the relation between theories and the realities they represent has a longstanding and venerable history. We take up this debate in relation to the free energy principle (FEP) - a contemporary framework in computational neuroscience, theoretical biology and the philosophy of cognitive science. The FEP is very ambitious, extending from the brain sciences to the biology of self-organisation. In this context, some find apparent discrepancies between the map (the FEP) and the territory (target (...) |
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Theoretical models are widely held as sources of knowledge of reality. Imagination is vital to their development and to the generation of plausible hypotheses about reality. But how can imagination, which is typically held to be completely free, effectively instruct us about reality? In this paper I argue that the key to answering this question is in constrained uses of imagination. More specifically, I identify make-believe as the right notion of imagination at work in modelling. I propose the first overarching (...) |
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I argue that normative formal epistemology (NFE) is best understood as modelling, in the sense that this is the reconstruction of its methodology on which NFE is doing best. I focus on Bayesianism and show that it has the characteristics of modelling. But modelling is a scientific enterprise, while NFE is normative. I thus develop an account of normative models on which they are idealised representations put to normative purposes. Normative assumptions, such as the transitivity of comparative credence, are characterised (...) |
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How do philosophers of science make use of historical case studies? Are their accounts of historical cases purpose-built and lacking in evidential strength as a result of putting forth and discussing philosophical positions? We will study these questions through the examination of three different philosophical case studies. All of them focus on modeling and on Vito Volterra, contrasting his work to that of other theoreticians. We argue that the worries concerning the evidential role of historical case studies in philosophy are (...) |
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