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  1. The Robust Volterra Principle.Michael Weisberg & Kenneth Reisman - 2008 - Philosophy of Science 75 (1):106-131.
    Theorizing in ecology and evolution often proceeds via the construction of multiple idealized models. To determine whether a theoretical result actually depends on core features of the models and is not an artifact of simplifying assumptions, theorists have developed the technique of robustness analysis, the examination of multiple models looking for common predictions. A striking example of robustness analysis in ecology is the discovery of the Volterra Principle, which describes the effect of general biocides in predator-prey systems. This paper details (...)
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  • Three Kinds of Idealization.Michael Weisberg - 2007 - Journal of Philosophy 104 (12):639-659.
    Philosophers of science increasingly recognize the importance of idealization: the intentional introduction of distortion into scientific theories. Yet this recognition has not yielded consensus about the nature of idealization. e literature of the past thirty years contains disparate characterizations and justifications, but little evidence of convergence towards a common position.
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  • Niche Construction and Conceptual Change in Evolutionary Biology.Tobias Uller & Heikki Helanterä - 2019 - British Journal for the Philosophy of Science 70 (2):351-375.
    The theoretical status of ‘niche construction’ in evolution is intensely debated. Here we substantiate the reasons for different interpretations. We consider two concepts of niche construction brought to bear on evolutionary theory; one that emphasizes how niche construction contributes to selection and another that emphasizes how it contributes to development and inheritance. We explain the rationale for claims that selective and developmental niche construction motivate conceptual change in evolutionary biology and the logic of those who reject these claims. Our analysis (...)
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  • Bridging the explanatory gaps: What can we learn from a biological agency perspective?Sonia E. Sultan, Armin P. Moczek & Denis Walsh - 2022 - Bioessays 44 (1):2100185.
    We begin this article by delineating the explanatory gaps left by prevailing gene‐focused approaches in our understanding of phenotype determination, inheritance, and the origin of novel traits. We aim not to diminish the value of these approaches but to highlight where their implementation, despite best efforts, has encountered persistent limitations. We then discuss how each of these explanatory gaps can be addressed by expanding research foci to take into accountbiological agency—the capacity of living systems at various levels to participate in (...)
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  • How biologists conceptualize genes: an empirical study.Karola Stotz, Paul E. Griffiths & Rob Knight - 2004 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 35 (4):647-673.
    Philosophers and historians of biology have argued that genes are conceptualized differently in different fields of biology and that these differences influence both the conduct of research and the interpretation of research by audiences outside the field in which the research was conducted. In this paper we report the results of a questionnaire study of how genes are conceptualized by biological scientists at the University of Sydney, Australia. The results provide tentative support for some hypotheses about conceptual differences between different (...)
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  • The Return of the Organism as a Fundamental Explanatory Concept in Biology.Daniel J. Nicholson - 2014 - Philosophy Compass 9 (5):347-359.
    Although it may seem like a truism to assert that biology is the science that studies organisms, during the second half of the twentieth century the organism category disappeared from biological theory. Over the past decade, however, biology has begun to witness the return of the organism as a fundamental explanatory concept. There are three major causes: (a) the realization that the Modern Synthesis does not provide a fully satisfactory understanding of evolution; (b) the growing awareness of the limits of (...)
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  • Multilevel Causation and the Extended Synthesis.Maximiliano Martínez & Maurizio Esposito - 2014 - Biological Theory 9 (2):209-220.
    In this article we argue that the classical—linear and bottom-up directed—models of causation in biology, and the ‘‘proximate/ultimate’’ dichotomy, are inappropriate to capture the complexity inherent to biological processes. We introduce a new notion of ‘‘multilevel causation’’ where old dichotomies such as proximate/ultimate and bottom-up/ top-down are reinterpreted within a multilevel, web-like, approach. In briefly reviewing some recent work on complexity, EvoDevo, carcinogenesis, autocatalysis, comparative genomics, animal regeneration, phenotypic plasticity, and niche construction, we will argue that such reinterpretation is a (...)
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  • What Makes a Scientific Explanation Distinctively Mathematical?Marc Lange - 2013 - British Journal for the Philosophy of Science 64 (3):485-511.
    Certain scientific explanations of physical facts have recently been characterized as distinctively mathematical –that is, as mathematical in a different way from ordinary explanations that employ mathematics. This article identifies what it is that makes some scientific explanations distinctively mathematical and how such explanations work. These explanations are non-causal, but this does not mean that they fail to cite the explanandum’s causes, that they abstract away from detailed causal histories, or that they cite no natural laws. Rather, in these explanations, (...)
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  • More on how and why: cause and effect in biology revisited.Kevin N. Laland, John Odling-Smee, William Hoppitt & Tobias Uller - 2012 - Biology and Philosophy 28 (5):719-745.
    In 1961, Ernst Mayr published a highly influential article on the nature of causation in biology, in which he distinguished between proximate and ultimate causes. Mayr argued that proximate causes (e.g. physiological factors) and ultimate causes (e.g. natural selection) addressed distinct ‘how’ and ‘why’ questions and were not competing alternatives. That distinction retains explanatory value today. However, the adoption of Mayr’s heuristic led to the widespread belief that ontogenetic processes are irrelevant to evolutionary questions, a belief that has (1) hindered (...)
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  • Experimental philosophy.Joshua Knobe - 2006 - Philosophy Compass 2 (1):81–92.
    Claims about people's intuitions have long played an important role in philosophical debates. The new field of experimental philosophy seeks to subject such claims to rigorous tests using the traditional methods of cognitive science – systematic experimentation and statistical analysis. Work in experimental philosophy thus far has investigated people's intuitions in philosophy of language, philosophy of mind, epistemology, and ethics. Although it is now generally agreed that experimental philosophers have made surprising discoveries about people's intuitions in each of these areas, (...)
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  • The rise and fall of experimental philosophy.Antti Kauppinen - 2007 - Philosophical Explorations 10 (2):95 – 118.
    In disputes about conceptual analysis, each side typically appeals to pre-theoretical 'intuitions' about particular cases. Recently, many naturalistically oriented philosophers have suggested that these appeals should be understood as empirical hypotheses about what people would say when presented with descriptions of situations, and have consequently conducted surveys on non-specialists. I argue that this philosophical research programme, a key branch of what is known as 'experimental philosophy', rests on mistaken assumptions about the relation between people's concepts and their linguistic behaviour. The (...)
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  • Experimental philosophy of science.Paul E. Griffiths & Karola Stotz - 2008 - Philosophy Compass 3 (3):507–521.
    Experimental philosophy of science gathers empirical data on how key scientific concepts are understood by particular scientific communities. In this paper we briefly describe two recent studies in experimental philosophy of biology, one investigating the concept of the gene, the other the concept of innateness. The use of experimental methods reveals facts about these concepts that would not be accessible using the traditional method of intuitions about possible cases. It also contributes to the study of conceptual change in science, which (...)
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  • Unmodern Synthesis: Developmental Hierarchies and the Origin of Phenotypes.Richard Gawne, Kenneth Z. McKenna & H. Frederik Nijhout - 2018 - Bioessays 40 (1):1600265.
    The question of whether the modern evolutionary synthesis requires an extension has recently become a topic of discussion, and a source of controversy. We suggest that this debate is, for the most part, not about the modern synthesis at all. Rather, it is about the extent to which genetic mechanisms can be regarded as the primary determinants of phenotypic characters. The modern synthesis has been associated with the idea that phenotypes are the result of gene products, while supporters of the (...)
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  • Reciprocal causation and the proximate–ultimate distinction.T. E. Dickins & R. A. Barton - 2013 - Biology and Philosophy 28 (5):747-756.
    Laland and colleagues have sought to challenge the proximate–ultimate distinction claiming that it imposes a unidirectional model of causation, is limited in its capacity to account for complex biological phenomena, and hinders progress in biology. In this article the core of their argument is critically analyzed. It is claimed that contrary to their claims Laland et al. rely upon the proximate–ultimate distinction to make their points and that their alternative conception of reciprocal causation refers to phenomena that were already accounted (...)
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  • Reciprocal Causation and the Extended Evolutionary Synthesis.Andrew Buskell - 2019 - Biological Theory 14 (4):267-279.
    Kevin Laland and colleagues have put forward a number of arguments motivating an extended evolutionary synthesis. Here I examine Laland et al.'s central concept of reciprocal causation. Reciprocal causation features in many arguments supporting an expanded evolutionary framework, yet few of these arguments are clearly delineated. Here I clarify the concept and make explicit three arguments in which it features. I identify where skeptics can—and are—pushing back against these arguments, and highlight what I see as the empirical, explanatory, and methodological (...)
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  • Unknotting reciprocal causation between organism and environment.Jan Baedke, Alejandro Fábregas-Tejeda & Guido I. Prieto - 2021 - Biology and Philosophy 36 (5):1-29.
    In recent years, biologists and philosophers of science have argued that evolutionary theory should incorporate more seriously the idea of ‘reciprocal causation.’ This notion refers to feedback loops whereby organisms change their experiences of the environment or alter the physical properties of their surroundings. In these loops, in particular niche constructing activities are central, since they may alter selection pressures acting on organisms, and thus affect their evolutionary trajectories. This paper discusses long-standing problems that emerge when studying such reciprocal causal (...)
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  • Organisms, Agency, and Evolution.D. M. Walsh - 2015 - Cambridge University Press.
    The central insight of Darwin's Origin of Species is that evolution is an ecological phenomenon, arising from the activities of organisms in the 'struggle for life'. By contrast, the Modern Synthesis theory of evolution, which rose to prominence in the twentieth century, presents evolution as a fundamentally molecular phenomenon, occurring in populations of sub-organismal entities - genes. After nearly a century of success, the Modern Synthesis theory is now being challenged by empirical advances in the study of organismal development and (...)
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  • Depth: An Account of Scientific Explanation.Michael Strevens - 2008 - Cambridge, Mass.: Harvard University Press.
    Approaches to explanation -- Causal and explanatory relevance -- The kairetic account of /D making -- The kairetic account of explanation -- Extending the kairetic account -- Event explanation and causal claims -- Regularity explanation -- Abstraction in regularity explanation -- Approaches to probabilistic explanation -- Kairetic explanation of frequencies -- Kairetic explanation of single outcomes -- Looking outward -- Looking inward.
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  • Experimental philosophy.Joshua Knobe - 2007 - The Philosophers' Magazine 50:72-73.
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  • Four Decades of Scientific Explanation.Wesley C. Salmon & Anne Fagot-Largeault - 1989 - History and Philosophy of the Life Sciences 16 (2):355.
    As Aristotle stated, scientific explanation is based on deductive argument--yet, Wesley C. Salmon points out, not all deductive arguments are qualified explanations. The validity of the explanation must itself be examined. _Four Decades of Scientific Explanation_ provides a comprehensive account of the developments in scientific explanation that transpired in the last four decades of the twentieth century. It continues to stand as the most comprehensive treatment of the writings on the subject during these years. Building on the historic 1948 essay (...)
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  • Phenotypic plasticity and evolution by genetic assimilation.Massimo Pigliucci, Courtney Murren & Carl Schlichting - 2006 - Journal of Experimental Biology 209:2362-2367.
    In addition to considerable debate in the recent evolutionary literature about the limits of the Modern Synthesis of the 1930s and 1940s, there has also been theoretical and empirical interest in a variety of new and not so new concepts such as phenotypic plasticity, genetic assimilation and phenotypic accommodation. Here we consider examples of the arguments and counter- arguments that have shaped this discussion. We suggest that much of the controversy hinges on several misunderstandings, including unwarranted fears of a general (...)
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  • The niche construction perspective: a critical appraisal.Thomas C. Scott-Phillips, Kevin N. Laland, David M. Shuker, Thomas E. Dickins & Stuart A. West - unknown
    Niche construction refers to the activities of organisms that bring about changes in their environments, many of which are evolutionarily and ecologically consequential. Advocates of niche construction theory (NCT) believe that standard evolutionary theory fails to recognize the full importance of niche construction, and consequently propose a novel view of evolution, in which niche construction and its legacy over time (ecological inheritance) are described as evolutionary processes, equivalent in importance to natural selection. Here, we subject NCT to critical evaluation, in (...)
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  • The Levels of Selection.Robert N. Brandon - 1982 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1982:315 - 323.
    In this paper Wimsatt's analysis of units of selection is taken as defining the units of selection question. A definition of levels of selection is offered and it is shown that the levels of selection question is quite different from the units of selection question. Some of the relations between units and levels are briefly explored. It is argued that the levels of selection question is the question relevant to explanatory concerns, and it is suggested that it is the question (...)
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  • Genes: Philosophical Analyses Put to the Test.Karola Stotz & Paul Griffiths - 2004 - History and Philosophy of the Life Sciences 26 (1):5-28.
    This paper describes one complete and one ongoing empirical study in which philosophical analyses of the concept of the gene were operationalized and tested against questionnaire data obtained from working biologists to determine whether and when biologists conceive genes in the ways suggested. These studies throw light on how different gene concepts contribute to biological research. Their aim is not to arrive at one or more correct 'definitions' of the gene, but rather to map out the variation in the gene (...)
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  • Assessing the prospects for a return of organisms in evolutionary biology.Philippe Huneman - 2010 - History and Philosophy of the Life Sciences 32 (2/3).
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  • The Advancement of Science: Science without Legend, Objectivity without Illusions.Philip Kitcher - 1996 - Erkenntnis 44 (3):379-395.
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