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  1. Re-thinking organisms: The impact of databases on model organism biology.Sabina Leonelli & Rachel A. Ankeny - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):29-36.
    Community databases have become crucial to the collection, ordering and retrieval of data gathered on model organisms, as well as to the ways in which these data are interpreted and used across a range of research contexts. This paper analyses the impact of community databases on research practices in model organism biology by focusing on the history and current use of four community databases: FlyBase, Mouse Genome Informatics, WormBase and The Arabidopsis Information Resource. We discuss the standards used by the (...)
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  • Aspects of Scientific Explanation and Other Essays in the Philosophy of Science.Carl Gustav Hempel - 1965 - New York: The Free Press.
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  • Across the boundaries: extrapolation in biology and social science.Daniel Steel (ed.) - 2007 - New York: Oxford University Press.
    Inferences like these are known as extrapolations.
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  • Scientific perspectivism.Ronald N. Giere - 2006 - Chicago: University of Chicago Press.
    Many people assume that the claims of scientists are objective truths. But historians, sociologists, and philosophers of science have long argued that scientific claims reflect the particular historical, cultural, and social context in which those claims were made. The nature of scientific knowledge is not absolute because it is influenced by the practice and perspective of human agents. Scientific Perspectivism argues that the acts of observing and theorizing are both perspectival, and this nature makes scientific knowledge contingent, as Thomas Kuhn (...)
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  • Making things happen: a theory of causal explanation.James F. Woodward - 2003 - New York: Oxford University Press.
    Woodward's long awaited book is an attempt to construct a comprehensive account of causation explanation that applies to a wide variety of causal and explanatory claims in different areas of science and everyday life. The book engages some of the relevant literature from other disciplines, as Woodward weaves together examples, counterexamples, criticisms, defenses, objections, and replies into a convincing defense of the core of his theory, which is that we can analyze causation by appeal to the notion of manipulation.
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  • The Structure of Tradeoffs in Model Building.John Matthewson & Michael Weisberg - 2009 - Synthese 170 (1):169 - 190.
    Despite their best efforts, scientists may be unable to construct models that simultaneously exemplify every theoretical virtue. One explanation for this is the existence of tradeoffs: relationships of attenuation that constrain the extent to which models can have such desirable qualities. In this paper, we characterize three types of tradeoffs theorists may confront. These characterizations are then used to examine the relationships between parameter precision and two types of generality. We show that several of these relationships exhibit tradeoffs and discuss (...)
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  • (1 other version)Models and fiction.Roman Frigg - 2007 - Synthese 172 (2):251-268.
    Most scientific models are not physical objects, and this raises important questions. What sort of entity are models, what is truth in a model, and how do we learn about models? In this paper I argue that models share important aspects in common with literary fiction, and that therefore theories of fiction can be brought to bear on these questions. In particular, I argue that the pretence theory as developed by Walton (1990, Mimesis as make-believe: on the foundations of the (...)
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  • The Scientific Image.William Demopoulos & Bas C. van Fraassen - 1982 - Philosophical Review 91 (4):603.
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  • Science in the age of computer simulation.Eric B. Winsberg - 2010 - Chicago: University of Chicago Press.
    Introduction -- Sanctioning models : theories and their scope -- Methodology for a virtual world -- A tale of two methods -- When theories shake hands -- Models of climate : values and uncertainties -- Reliability without truth -- Conclusion.
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  • A comparison of the meaning and uses of models in mathematics and the empirical sciences.Patrick Suppes - 1960 - Synthese 12 (2-3):287--301.
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  • How the choice of experimental organism matters: Epistemological reflections on an aspect of biological practice.Richard M. Burian - 1993 - Journal of the History of Biology 26 (2):351-367.
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  • The Organism: A Holistic Approach to Biology Derived from Pathological Data in Man.Kurt Goldstein - 1995 - Princeton University Press.
    This book, Goldstein's magnum opus and widely regarded as a modern classic in psychology and biology, grew out of his dissatisfaction with traditional natural science techniques for analyzing living beings.
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  • Two models of models in biomedical research.Hugh LaFollette & Niall Shanks - 1995 - Philosophical Quarterly 45 (179):141-160.
    Biomedical researchers claim there is significant biomedical information about humans which can be discovered only through experiments on intact animal systems (AMA p. 2). Although epidemiological studies, computer simulations, clinical investigation, and cell and tissue cultures have become important weapons in the biomedical scientists' arsenal, these are primarily "adjuncts to the use of animals in research" (Sigma Xi p. 76). Controlled laboratory experiments are the core of the scientific enterprise. Biomedical researchers claim these should be conducted on intact biological systems, (...)
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  • Biological Complexity and Integrative Pluralism.Sandra D. Mitchell - 2003 - Cambridge University Press.
    This fine collection of essays by a leading philosopher of science presents a defence of integrative pluralism as the best description for the complexity of scientific inquiry today. The tendency of some scientists to unify science by reducing all theories to a few fundamental laws of the most basic particles that populate our universe is ill-suited to the biological sciences, which study multi-component, multi-level, evolved complex systems. This integrative pluralism is the most efficient way to understand the different and complex (...)
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  • (1 other version)Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - British Journal for the Philosophy of Science 46 (4):621-623.
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  • Models as Mediators: Perspectives on Natural and Social Science.Mary S. Morgan & Margaret Morrison (eds.) - 1999 - Cambridge University Press.
    Models as Mediators discusses the ways in which models function in modern science, particularly in the fields of physics and economics. Models play a variety of roles in the sciences: they are used in the development, exploration and application of theories and in measurement methods. They also provide instruments for using scientific concepts and principles to intervene in the world. The editors provide a framework which covers the construction and function of scientific models, and explore the ways in which they (...)
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  • Creating Scientific Concepts.Nancy J. Nersessian - 2008 - MIT Press.
    How do novel scientific concepts arise? In Creating Scientific Concepts, Nancy Nersessian seeks to answer this central but virtually unasked question in the problem of conceptual change. She argues that the popular image of novel concepts and profound insight bursting forth in a blinding flash of inspiration is mistaken. Instead, novel concepts are shown to arise out of the interplay of three factors: an attempt to solve specific problems; the use of conceptual, analytical, and material resources provided by the cognitive-social-cultural (...)
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  • The roles of integration in molecular systems biology.Maureen A. O’Malley & Orkun S. Soyer - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):58-68.
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  • (1 other version)Discovery and Explanation in Biology and Medicine.Kenneth F. Schaffner - 1995 - Journal of the History of Biology 28 (1):172-174.
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  • (2 other versions)Unifying Scientific Theories.Margaret Morrison - 2001 - Mind 110 (440):1097-1102.
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  • Philosophy of Experimental Biology.Marcel Weber - 2004 - Cambridge University Press.
    Philosophy of Experimental Biology explores some central philosophical issues concerning scientific research in experimental biology, including genetics, biochemistry, molecular biology, developmental biology, neurobiology, and microbiology. It seeks to make sense of the explanatory strategies, concepts, ways of reasoning, approaches to discovery and problem solving, tools, models and experimental systems deployed by scientific life science researchers and also integrates developments in historical scholarship, in particular the New Experimentalism. It concludes that historical explanations of scientific change that are based on local laboratory (...)
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  • Humanised models of cancer in molecular medicine: the experimental control of disanalogy.Paolo Maugeri & Alessandro Blasimme - 2011 - History and Philosophy of the Life Sciences 33 (4).
    This paper explores the epistemology of extrapolation from model organisms to humans in molecular medicine. We take into account two common views on the issue, the homology view and the disanalogy view. In response to both interpretations, we argue that the foundational basis of extrapolations cannot simply be provided by homology and that relevant disanalogies can, thanks to the techniques of molecular biology, be experimentally controlled and exploited to allow useful and reliable extrapolations. The case of "humanised mice" in the (...)
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