This innovative book presents candid, informal debates among scholars who examine the benefits and problems of studying science in the same way that scientists study the natural world.

A consensus exists among contemporary philosophers of biology about the history of their field. According to the received view, mainstream philosophy of science in the 1930s, 40s, and 50s focused on physics and general epistemology, neglecting analyses of the 'special sciences', including biology. The subdiscipline of philosophy of biology emerged (and could only have emerged) after the decline of logical positivism in the 1960s and 70s. In this article, I present bibliometric data from four major philosophy of science journals (Erkenntnis, (...) Philosophy of Science, Synthese, and the British Journal for the Philosophy of Science), covering 1930-59, which challenge this view. (shrink)

The application of digital humanities techniques to philosophy is changing the way scholars approach the discipline. This paper seeks to open a discussion about the difficulties, methods, opportunities, and dangers of creating and utilizing a formal representation of the discipline of philosophy. We review our current project, the Indiana Philosophy Ontology (InPhO) project, which uses a combination of automated methods and expert feedback to create a dynamic computational ontology for the discipline of philosophy. We argue that our distributed, expert-based approach (...) to modeling the discipline carries substantial practical and philosophical benefits over alternatives. We also discuss challenges facing our project (and any other similar project) as well as the future directions for digital philosophy afforded by formal modeling. (shrink)

Is the history of life a series of accidents or a drama scripted by selfish genes? Is there an “essential” human nature, determined at birth or in a distant evolutionary past? What should we conserve—species, ecosystems, or something else? -/- Informed answers to questions like these, critical to our understanding of ourselves and the world around us, require both a knowledge of biology and a philosophical framework within which to make sense of its findings. In this accessible introduction to philosophy (...) of biology, Kim Sterelny and Paul E. Griffiths present both the science and the philosophical context necessary for a critical understanding of the most exciting debates shaping biology today. The authors, both of whom have published extensively in this field, describe the range of competing views—including their own—on these fascinating topics. -/- With its clear explanations of both biological and philosophical concepts, Sex and Death will appeal not only to undergraduates, but also to the many general readers eager to think critically about the science of life. (shrink)

Perhaps because of it implications for our understanding of human nature, recent philosophy of biology has seen what might be the most dramatic work in the philosophies of the ?special? sciences. This drama has centered on evolutionary theory, and in the second edition of this textbook, Elliott Sober introduces the reader to the most important issues of these developments. With a rare combination of technical sophistication and clarity of expression, Sober engages both the higher level of theory and the direct (...) implications for such controversial issues as creationism, teleology, nature versus nurture, and sociobiology. Above all, the reader will gain from this book a firm grasp of the structure of evolutionary theory, the evidence for it, and the scope of its explanatory significance. (shrink)

Comprised of essays by top scholars in the field, this volume offers detailed overviews of philosophical issues raised by biology. Brings together a team of eminent scholars to explore the philosophical issues raised by biology Addresses traditional and emerging topics, spanning molecular biology and genetics, evolution, developmental biology, immunology, ecology, mind and behaviour, neuroscience, and experimentation Begins with a thorough introduction to the field Goes beyond previous treatments that focused only on evolution to give equal attention to other areas, such (...) as molecular and developmental biology Represents both an authoritative guide to philosophy of biology, and an accessible reference work for anyone seeking to learn about this rapidly-changing field. (shrink)

We introduce here evoText, a new tool for automated analysis of the literature in the biological sciences. evoText contains a database of hundreds of thousands of journal articles and an array of analysis tools for generating quantitative data on the nature and history of life science, especially ecology and evolutionary biology. This article describes the features of evoText, presents a variety of examples of the kinds of analyses that evoText can run, and offers a brief tutorial describing how to use (...) it. (shrink)

Which domains of biology do philosophers of biology primarily study? The fact that philosophy of biology has been dominated by an interest for evolutionary biology is widely admitted, but it has not been strictly demonstrated. Here I analyse the topics of all the papers published in Biology & Philosophy, just as the journal celebrates its thirtieth anniversary. I then compare the distribution of biological topics in Biology & Philosophy with that of the scientific journal Proceedings of the National Academy of (...) Science of the USA, focusing on the recent period 2003–2015. This comparison reveals a significant mismatch between the distributions of these topics. I examine plausible explanations for that mismatch. Finally, I argue that many biological topics underrepresented in philosophy of biology raise important philosophical issues and should therefore play a more central role in future philosophy of biology. (shrink)

Philosophy of science is expanding via the introduction of new digital data and tools for their analysis. The data comprise digitized published books and journal articles, as well as heretofore unpublished material such as images, archival text, notebooks, meeting notes, and programs. The growth in available data is matched by the extensive development of automated analysis tools. The variety of data sources and tools can be overwhelming. In this article, we survey the state of digital work in the philosophy of (...) science, showing what kinds of questions can be answered and how one can go about answering them. (shrink)

Journal of the History of Biology provides a fifty-year long record for examining the evolution of the history of biology as a scholarly discipline. In this paper, we present a new dataset and preliminary quantitative analysis of the thematic content of JHB from the perspectives of geography, organisms, and thematic fields. The geographic diversity of authors whose work appears in JHB has increased steadily since 1968, but the geographic coverage of the content of JHB articles remains strongly lopsided toward the (...) United States, United Kingdom, and western Europe and has diversified much less dramatically over time. The taxonomic diversity of organisms discussed in JHB increased steadily between 1968 and the late 1990s but declined in later years, mirroring broader patterns of diversification previously reported in the biomedical research literature. Finally, we used a combination of topic modeling and nonlinear dimensionality reduction techniques to develop a model of multi-article fields within JHB. We found evidence for directional changes in the representation of fields on multiple scales. The diversity of JHB with regard to the representation of thematic fields has increased overall, with most of that diversification occurring in recent years. Drawing on the dataset generated in the course of this analysis, as well as web services in the emerging digital history and philosophy of science ecosystem, we have developed an interactive web platform for exploring the content of JHB, and we provide a brief overview of the platform in this article. As a whole, the data and analyses presented here provide a starting-place for further critical reflection on the evolution of the history of biology over the past half-century. (shrink)

Philosophy of biology is often said to have emerged in the last third of the twentieth century. Prior to this time, it has been alleged that the only authors who engaged philosophically with the life sciences were either logical empiricists who sought to impose the explanatory ideals of the physical sciences onto biology, or vitalists who invoked mystical agencies in an attempt to ward off the threat of physicochemical reduction. These schools paid little attention to actual biological science, and as (...) a result philosophy of biology languished in a state of futility for much of the twentieth century. The situation, we are told, only began to change in the late 1960s and early 1970s, when a new generation of researchers began to focus on problems internal to biology, leading to the consolidation of the discipline. In this paper we challenge this widely accepted narrative of the history of philosophy of biology. We do so by arguing that the most important tradition within early twentieth-century philosophy of biology was neither logical empiricism nor vitalism, but the organicist movement that flourished between the First and Second World Wars. We show that the organicist corpus is thematically and methodologically continuous with the contemporary literature in order to discredit the view that early work in the philosophy of biology was unproductive, and we emphasize the desirability of integrating the historical and contemporary conversations into a single, unified discourse. (shrink)

Search in an environment with an uncertain distribution of resources involves a trade-off between exploitation of past discoveries and further exploration. This extends to information foraging, where a knowledge-seeker shifts between reading in depth and studying new domains. To study this decision-making process, we examine the reading choices made by one of the most celebrated scientists of the modern era: Charles Darwin. From the full-text of books listed in his chronologically-organized reading journals, we generate topic models to quantify his local (...) (text-to-text) and global (text-to-past) reading decisions using Kullback-Liebler Divergence, a cognitively-validated, information-theoretic measure of relative surprise. Rather than a pattern of surprise-minimization, corresponding to a pure exploitation strategy, Darwin’s behavior shifts from early exploitation to later exploration, seeking unusually high levels of cognitive surprise relative to previous eras. These shifts, detected by an unsupervised Bayesian model, correlate with major intellectual epochs of his career as identified both by qualitative scholarship and Darwin’s own self-commentary. Our methods allow us to compare his consumption of texts with their publication order. We find Darwin’s consumption more exploratory than the culture’s production, suggesting that underneath gradual societal changes are the explorations of individual synthesis and discovery. Our quantitative methods advance the study of cognitive search through a framework for testing interactions between individual and collective behavior and between short- and long-term consumption choices. This novel application of topic modeling to characterize individual reading complements widespread studies of collective scientific behavior. (shrink)

What is philosophy of science? Numerous manuals, anthologies or essays provide carefully reconstructed vantage points on the discipline that have been gained through expert and piecemeal historical analyses. In this paper, we address the question from a complementary perspective: we target the content of one major journal of the field—Philosophy of Science—and apply unsupervised text-mining methods to its complete corpus, from its start in 1934 until 2015. By running topic-modeling algorithms over the full-text corpus, we identified 126 key research topics (...) that span across 82 years. We also tracked their evolution and fluctuating significance over time in the journal articles. Our results concur with and document known and lesser-known episodes of the philosophy of science, including the rise and fall of logic and language-related topics, the relative stability of a metaphysical and ontological questioning (space and time, causation, natural kinds, realism), the significance of epistemological issues about the nature of scientific knowledge as well as the rise of a recent philosophy of biology and other trends. These analyses exemplify how computational text-mining methods can be used to provide an empirical large-scale and data-driven perspective on the history of philosophy of science that is complementary to other current historical approaches. (shrink)

In a series of articles and books published in the 1970s, David Hull (1935–2010) and Michael Ruse (1940–) proposed interpretations of the relation between nineteenth-century British philosophy of science, on the one hand, and the views and methods of Charles Darwin, on the other, that were incompatible or at least in strong interpretive tension with one another. According to Hull, John Herschel’s and William Whewell’s philosophies of science were logically incompatible with Darwin’s revolutionary theory. According to Ruse, however, Darwin discovered (...) and developed his theory through direct adherence to those philosophies. Here, I reconstruct Hull’s and Ruse’s interpretations of the Herschel-Whewell-Darwin relationship and then, drawing on Hull’s and Ruse’s published record and archival correspondence in the years 1968–76—particularly regarding reduction, laws, and species—I offer an explanation for their differences, namely, their different orientations to logical empiricism. (shrink)

A healthy, growing field such as the philosophy of biology deserves to have a variety of different points of entry for students, instructors, and non-specialist academics who want to learn about the field. Among the many new books that introduce this dynamic area of research, Garvey's Philosophy of Biology may provide the most compact and accessible survey of the field. After explaining Darwin's theory of evolution, he offers four chapters about contemporary issues in evolutionary theory. The middle chapters concern key (...) concepts in biology: innateness, function, and species. The final four chapters examine how evolutionary biology might influence our perspectives on epistemology, ethics, religion, and human nature.Acquaintances occasionally ask me to recommend a book that introduces the field in layman's terms. Until recently, I didn't have a good answer. The standard textbooks by Sober and Sterelny & Griffiths are good for classroom use but are too demanding for casual reading. Thus, I was intrigued when the jacket blurb described Garvey's book as ‘suitable …. (shrink)

The Oxford Handbook of Philosophy of Biology is an exciting collection of new essays written especially to give the reader an introduction to one of the most vibrant areas of scholarship today, and at the same time to move the subject forward dramatically. Written in a clear and rigorous style it will give the more experienced scholar much to think about and will also be of great value to the new student of the subject. The handbook covers the history of (...) the topic, then moves into important analyses of contemporary evolutionary thinking, and continues with discussions of genetics and the moral and epistemological foundations of our understanding of heredity. The book goes on to cover ecology, behavior and morality, and does not neglect religion or feminist issues. Finally, it takes up matters to do with language and metaphor. The authors range from the senior and experienced to new and exciting young scholars. The Oxford Handbook of Philosophy of Biology is a collection that will be of interest to philosophers of science, to philosophers generally, as well as biologists of all kinds. There is no better way to learn about this dynamic field than through the essays in this volume. (shrink)

The philosophy of biology is one of the most exciting new areas in the field of philosophy and one that is attracting much attention from working scientists. This Companion, edited by two of the founders of the field, includes newly commissioned essays by senior scholars and up-and-coming younger scholars who collectively examine the main areas of the subject - the nature of evolutionary theory, classification, teleology and function, ecology, and the problematic relationship between biology and religion, among other topics. Up-to-date (...) and comprehensive in its coverage, this unique volume will be of interest not only to professional philosophers but also to students in the humanities and researchers in the life sciences and related areas of inquiry. (shrink)

Literally speaking, "Philosophy of biology" is a rather old expression. William Whewell coined it in 1840, at the very time he introduced the expression "philosophy of science". Whewell was fond of creating neologisms, like Auguste Comte, his French counterpart in the field of the philosophical reflection about science. Historians of science know that a few years earlier, in 1834, Whewell had generated a small scandal when he proposed the word "scientist" as a general term by which "the students of the (...) knowledge of the material world" could describe themselves, and distinguish themselves from artists. The term "philosopher", Whewell argued, was too wide. A new generic term, more or less equivalent to the French term "savant", was needed in order to prevent the disintegration of science that seemed to flow from its specialization in modern times.1 When Whewell first introduced the terms "philosophy of science" and "philosophy of biology" in his 1840 Philosophy of the inductive sciences, the latter term was merely a special branch of "philosophy of science". The expression "philosophy of science" itself had two justifications: firstly, this phrase expressed the idea that "science" remained cognitively coherent enough to justify a critical enquiry into its methodological unity and its foundation; secondly, the phrase "philosophy of science" was required in order to distinguish a properly "philosophical" enquiry from a "historical" approach to science. Although Whewell's 1840 Philosophy of the inductive sciences 2 had approximately the same chapter structure as his 1837 History of the Inductive Sciences 3 (that is, a series of chapters successively devoted to the concept of science in general, and although there was considerable overlap between the contents of the two books, then to particular sciences), its theoretical purpose was different. Clearly, Whewell was not willing to confuse the genres of history and philosophy as Auguste Comte had done in his 1830 Cours de philosophie positive.4 Note also that the word "biology" was still extremely rare in English when Whewell used it in 1840. In fact, Whewell's 1837 History of the Inductive Sciences does not make use of the word "biology": Whewell successively examines "botany", "zoology", "physiology" and "comparative antomy" as special branches of "analytico-classificatory science", then discusses palaeontology as a special case of the "palaeo-etiological sciences". Three years later, in his Philosophy of the Inductive Sciences, Whewell does use "biology" as a generic term for all the sciences dealing with life. The various sciences which were separately examined in the previous book are now collectively considered. Furthermore, the main philosophical problem raised by biology is its dual nature: biology is both nomological and a historical science. Modern philosophers of biology are generally unaware of the story of the origins of the expression "philosophy of biology", but Whewell's dual theoretical nature of biology is still a major concern for modern "philosophy of biology". (shrink)