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Stanford Encyclopedia of Philosophy (2008)

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  1. Science, Policy, and the Value-Free Ideal.Heather Douglas - 2009 - University of Pittsburgh Press.
    Douglas proposes a new ideal in which values serve an essential function throughout scientific inquiry, but where the role values play is constrained at key points, protecting the integrity and objectivity of science.
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  • Functional analysis.Robert E. Cummins - 1975 - Journal of Philosophy 72 (November):741-64.
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  • Biological Autonomy: A Philosophical and Theoretical Enquiry.Alvaro Moreno & Matteo Mossio - 2015 - Dordrecht: Springer. Edited by Matteo Mossio.
    Since Darwin, Biology has been framed on the idea of evolution by natural selection, which has profoundly influenced the scientific and philosophical comprehension of biological phenomena and of our place in Nature. This book argues that contemporary biology should progress towards and revolve around an even more fundamental idea, that of autonomy. Biological autonomy describes living organisms as organised systems, which are able to self-produce and self-maintain as integrated entities, to establish their own goals and norms, and to promote the (...)
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  • Unsimple Truths: Science, Complexity, and Policy.Sandra D. Mitchell - 2009 - London: University of Chicago Press.
    The world is complex, but acknowledging its complexity requires an appreciation for the many roles context plays in shaping natural phenomena. In _Unsimple Truths, _Sandra Mitchell argues that the long-standing scientific and philosophical deference to reductive explanations founded on simple universal laws, linear causal models, and predict-and-act strategies fails to accommodate the kinds of knowledge that many contemporary sciences are providing about the world. She advocates, instead, for a new understanding that represents the rich, variegated, interdependent fabric of many levels (...)
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  • The Architecture of Complexity.Herbert A. Simon - 1962 - Proceedings of the American Philosophical Society 106.
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  • The dialectical biologist.Richard Levins - 1985 - Cambridge: Harvard University Press. Edited by Richard C. Lewontin.
    Throughout, this book questions our accepted definitions and biases, showing the self-reflective nature of scientific activity within society.
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  • Biological Complexity and Integrative Pluralism.Sandra D. Mitchell - 2003 - Cambridge University Press.
    This fine collection of essays by a leading philosopher of science presents a defence of integrative pluralism as the best description for the complexity of scientific inquiry today. The tendency of some scientists to unify science by reducing all theories to a few fundamental laws of the most basic particles that populate our universe is ill-suited to the biological sciences, which study multi-component, multi-level, evolved complex systems. This integrative pluralism is the most efficient way to understand the different and complex (...)
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  • Inductive risk and values in science.Heather Douglas - 2000 - Philosophy of Science 67 (4):559-579.
    Although epistemic values have become widely accepted as part of scientific reasoning, non-epistemic values have been largely relegated to the "external" parts of science (the selection of hypotheses, restrictions on methodologies, and the use of scientific technologies). I argue that because of inductive risk, or the risk of error, non-epistemic values are required in science wherever non-epistemic consequences of error should be considered. I use examples from dioxin studies to illustrate how non-epistemic consequences of error can and should be considered (...)
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  • Who is a Modeler?Michael Weisberg - 2007 - British Journal for the Philosophy of Science 58 (2):207-233.
    Many standard philosophical accounts of scientific practice fail to distinguish between modeling and other types of theory construction. This failure is unfortunate because there are important contrasts among the goals, procedures, and representations employed by modelers and other kinds of theorists. We can see some of these differences intuitively when we reflect on the methods of theorists such as Vito Volterra and Linus Pauling on the one hand, and Charles Darwin and Dimitri Mendeleev on the other. Much of Volterra's and (...)
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  • A modern history theory of functions.Peter Godfrey-Smith - 1994 - Noûs 28 (3):344-362.
    Biological functions are dispositions or effects a trait has which explain the recent maintenance of the trait under natural selection. This is the "modern history" approach to functions. The approach is historical because to ascribe a function is to make a claim about the past, but the relevant past is the recent past; modern history rather than ancient.
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  • Value-Free Science: Ideals and Illusions?Harold Kincaid, John Dupre & Alison Wylie (eds.) - 2007 - New York: Oxford University Press.
    "It has long been thought that science is our best hope for realizing objective knowledge, but that, to deliver on this promise, it must be free of the influence of any values that are not purely epistemic. As recent work in philosophy, history, and social studies of science shows, however, things are not so simple. The contributors to this volume ask where and how nonepistemic values are involved in science; they explore the roles these values play at the heart of (...)
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  • What is Biodiversity?James Maclaurin & Kim Sterelny - 2008 - University of Chicago Press.
    What Is Biodiversity? is a theoretical and conceptual exploration of the biological world and how diversity is valued. Maclaurin and Sterelny explore not only the origins of the concept of biodiversity, but also how that concept has been shaped by ecology and more recently by conservation biology. They explain the different types of biodiversity important in evolutionary theory, developmental biology, ecology, morphology and taxonomy and conclude that biological heritage is rich in not just one biodiversity but many. Maclaurin and Sterelny (...)
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  • Science as Social Knowledge: Values and Objectivity in Scientific Inquiry.Helen E. Longino - 1990 - Journal of the History of Biology 25 (2):340-341.
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  • Prediction versus accommodation and the risk of overfitting.Christopher Hitchcock & Elliott Sober - 2004 - British Journal for the Philosophy of Science 55 (1):1-34.
    an observation to formulate a theory, it is no surprise that the resulting theory accurately captures that observation. However, when the theory makes a novel prediction—when it predicts an observation that was not used in its formulation—this seems to provide more substantial confirmation of the theory. This paper presents a new approach to the vexed problem of understanding the epistemic difference between prediction and accommodation. In fact, there are several problems that need to be disentangled; in all of them, the (...)
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  • Dimensions of scientific law.Sandra D. Mitchell - 2000 - Philosophy of Science 67 (2):242-265.
    Biological knowledge does not fit the image of science that philosophers have developed. Many argue that biology has no laws. Here I criticize standard normative accounts of law and defend an alternative, pragmatic approach. I argue that a multidimensional conceptual framework should replace the standard dichotomous law/ accident distinction in order to display important differences in the kinds of causal structure found in nature and the corresponding scientific representations of those structures. To this end I explore the dimensions of stability, (...)
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  • Broadening the problem agenda of biological individuality: individual differences, uniqueness and temporality.Rose Trappes & Marie I. Kaiser - 2021 - Biology and Philosophy 36 (2):1-28.
    Biological individuality is a notoriously thorny topic for biologists and philosophers of biology. In this paper we argue that biological individuality presents multiple, interconnected questions for biologists and philosophers that together form a problem agenda. Using a case study of an interdisciplinary research group in ecology, behavioral and evolutionary biology, we claim that a debate on biological individuality that seeks to account for diverse practices in the biological sciences should be broadened to include and give prominence to questions about uniqueness (...)
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  • The Science of the Struggle for Existence: On the Foundations of Ecology.Gregory John Cooper - 2003 - New York: Cambridge University Press.
    This book is a sustained examination of issues in the philosophy of ecology that have been a source of controversy since the emergence of ecology as an explicit scientific discipline. The controversies revolve around the idea of a balance of nature, the possibility of general ecological knowledge and the role of model-building in ecology. The Science of the Struggle for Existence is also a detailed treatment of these issues that incorporates both a comprehensive investigation of the relevant ecological literature and (...)
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  • Individual differences, uniqueness, and individuality in behavioural ecology.Rose Trappes - 2022 - Studies in History and Philosophy of Science Part A 96 (C):18-26.
    In this paper I develop a concept of behavioural ecological individuality. Using findings from a case study which employed qualitative methods, I argue that individuality in behavioural ecology should be defined as phenotypic and ecological uniqueness, a concept that is operationalised in terms of individual differences such as animal personality and individual specialisation. This account make sense of how the term “individuality” is used in relation to intrapopulation variation in behavioural ecology. The concept of behavioural ecological individuality can sometimes be (...)
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  • Modelling as Indirect Representation? The Lotka–Volterra Model Revisited.Tarja Knuuttila & Andrea Loettgers - 2017 - British Journal for the Philosophy of Science 68 (4):1007-1036.
    ABSTRACT Is there something specific about modelling that distinguishes it from many other theoretical endeavours? We consider Michael Weisberg’s thesis that modelling is a form of indirect representation through a close examination of the historical roots of the Lotka–Volterra model. While Weisberg discusses only Volterra’s work, we also study Lotka’s very different design of the Lotka–Volterra model. We will argue that while there are elements of indirect representation in both Volterra’s and Lotka’s modelling approaches, they are largely due to two (...)
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  • Biodiversity and Environmental Philosophy: An Introduction.Sahotra Sarkar - 2005 - Cambridge University Press.
    This book explores the epistemological and ethical issues at the foundations of environmental philosophy, emphasising the conservation of biodiversity. Sahota Sarkar criticises attempts to attribute intrinsic value to nature and defends an anthropocentric position on biodiversity conservation based on an untraditional concept of transformative value. Unlike other studies in the field of environmental philosophy, this book is as much concerned with epistemological issues as with environmental ethics. It covers a broad range of topics, including problems of explanation and prediction in (...)
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  • A taxonomy of interdisciplinarity.Julie Thompson Klein - 2010 - In Robert Frodeman, Julie Thompson Klein & Carl Mitcham, The Oxford Handbook of Interdisciplinarity. Oxford, United Kingdom: Oxford University Press.
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  • Pure science and the problem of progress.Heather Douglas - 2014 - Studies in History and Philosophy of Science Part A 46:55-63.
    How should we understand scientific progress? Kuhn famously discussed science as its own internally driven venture, structured by paradigms. He also famously had a problem describing progress in science, as problem-solving ability failed to provide a clear rubric across paradigm change—paradigm changes tossed out problems as well as solving them. I argue here that much of Kuhn’s inability to articulate a clear view of scientific progress stems from his focus on pure science and a neglect of applied science. I trace (...)
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  • The roles of integration in molecular systems biology.Maureen A. O’Malley & Orkun S. Soyer - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):58-68.
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  • Populations as individuals.Roberta L. Millstein - 2009 - Biological Theory 4 (3):267-273.
    Biologists studying ecology and evolution use the term “population” in many different ways. Yet little philosophical analysis of the concept has been done, either by biologists or philosophers, in contrast to the voluminous literature on the concept of “species.” This is in spite of the fact that “population” is arguably a far more central concept in ecological and evolutionary studies than “species” is. The fact that such a central concept has been employed in so many different ways is potentially problematic (...)
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  • A Causal-Role Account of Ecological Role Functions.Katie H. Morrow - 2023 - Philosophy of Science 90: 433–453.
    I develop an account of ecological role functions—the functions of species within ecosystems—which is informed by alternative regime phenomena in ecology. My account is a causal-role theory which includes a counterfactual sensitivity condition. The account tracks and explains a distinction ecologists make between functions and various activities which are not functions. My counterfactual sensitivity condition resolves the liberality problem often attributed to causal-role theories of function, while also illuminating the explanatory centrality of role functions within ecology.
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  • Complex systems, trade‐offs, and theoretical population biology: Richard Levin's “strategy of model building in population biology” revisited.Jay Odenbaugh - 2003 - Philosophy of Science 70 (5):1496-1507.
    Ecologist Richard Levins argues population biologists must trade‐off the generality, realism, and precision of their models since biological systems are complex and our limitations are severe. Steven Orzack and Elliott Sober argue that there are cases where these model properties cannot be varied independently of one another. If this is correct, then Levins's thesis that there is a necessary trade‐off between generality, precision, and realism in mathematical models in biology is false. I argue that Orzack and Sober's arguments fail since (...)
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  • Philosophy of interdisciplinarity. What? Why? How?Uskali Mäki - 2016 - European Journal for Philosophy of Science 6 (3):327-342.
    Compared to the massive literature from other disciplinary perspectives on interdisciplinarity, philosophy of science is only slowly beginning to pay systematic attention to this powerful trend in contemporary science. The paper provides some metaphilosophical reflections on the emerging “Philosophy of Interdisciplinarity”. What? I propose a conception of PhID that has the qualities of being broad and neutral as well as stemming from within the agenda of philosophy of science. It will investigate features of science that reveal themselves when scientific disciplines (...)
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  • Function in ecology: an organizational approach.Nei Nunes-Neto, Alvaro Moreno & Charbel N. El-Hani - 2014 - Biology and Philosophy 29 (1):123-141.
    Functional language is ubiquitous in ecology, mainly in the researches about biodiversity and ecosystem function. However, it has not been adequately investigated by ecologists or philosophers of ecology. In the contemporary philosophy of ecology we can recognize a kind of implicit consensus about this issue: while the etiological approaches cannot offer a good concept of function in ecology, Cummins’ systemic approach can. Here we propose to go beyond this implicit consensus, because we think these approaches are not adequate for ecology. (...)
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  • Interdisciplinary success without integration.Till Grüne-Yanoff - 2016 - European Journal for Philosophy of Science 6 (3):343-360.
    Some scholars see interdisciplinarity as a special case of a broader unificationist program. They accept the unification of the sciences as a regulative ideal, and derive from this the normative justification of interdisciplinary research practices. The crucial link for this position is the notion of integration: integration increases the cohesion of concepts and practices, and more specifically of explanations, ontologies, methods and data. Interdisciplinary success then consists in the integration of fields or disciplines, and this constitutes success in the sense (...)
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  • Indexically Structured Ecological Communities.Christopher Hunter Lean - 2018 - Philosophy of Science 85 (3):501-522.
    Ecological communities are seldom, if ever, biological individuals. They lack causal boundaries as the populations that constitute communities are not congruent and rarely have persistent functional roles regulating the communities’ higher-level properties. Instead we should represent ecological communities indexically, by identifying ecological communities via the network of weak causal interactions between populations that unfurl from a starting set of populations. This precisification of ecological communities helps identify how community properties remain invariant, and why they have robust characteristics. This respects the (...)
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  • The Concepts of Population and Metapopulation in Evolutionary Biology and Ecology.Roberta L. Millstein - 2010 - In M. A. Bell, D. J. Futuyma, W. F. Eanes & J. S. Levinton, Evolution Since Darwin: The First 150 Years. Sinauer.
    This paper aims to illustrate one of the primary goals of the philosophy of biology⎯namely, the examination of central concepts in biological theory and practice⎯through an analysis of the concepts of population and metapopulation in evolutionary biology and ecology. I will first provide a brief background for my analysis, followed by a characterization of my proposed concepts: the causal interactionist concepts of population and metapopulation. I will then illustrate how the concepts apply to six cases that differ in their population (...)
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  • Save the planet: eliminate biodiversity.Carlos Santana - 2014 - Biology and Philosophy 29 (6):761-780.
    Recent work in the philosophy of biology has attempted to clarify and defend the use of the biodiversity concept in conservation science. I argue against these views, and give reasons to think that the biodiversity concept is a poor fit for the role we want it to play in conservation biology on both empirical and conceptual grounds. Against pluralists, who hold that biodiversity consists of distinct but correlated properties of natural systems, I argue that the supposed correlations between these properties (...)
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  • What is a Target System?Alkistis Elliott-Graves - 2020 - Biology and Philosophy 35 (2):1-22.
    Many phenomena in the natural world are complex, so scientists study them through simplified and idealised models. Philosophers of science have sought to explain how these models relate to the world. On most accounts, models do not represent the world directly, but through target systems. However, our knowledge of target systems is incomplete. First, what is the process by which target systems come about? Second, what types of entity are they? I argue that the basic conception of target systems, on (...)
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  • Time Scales and Levels of Organization.James DiFrisco - 2017 - Erkenntnis 82 (4):795-818.
    The concept of levels of organization, despite its widespread scientific currency, has recently been criticized by a number of philosophers of science. This paper diagnoses the main source of problems facing theories of levels. On this basis, the problems with the usual criteria for distinguishing levels are evaluated: compositional relations, organizational types, and spatial scales. Drawing on some work on hierarchies in ecology, I argue in favor of an alternative conception of levels defined by the criterion of rates or time (...)
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  • The Legend of Order and Chaos: Communities and Early Community Ecology.Christopher H. Eliot - 2011 - In Kevin deLaplante, Bryson Brown & Kent A. Peacock, Philosophy of ecology. Waltham, MA: North-Holland. pp. 49--108.
    A community, for ecologists, is a unit for discussing collections of organisms. It refers to collections of populations, which consist (by definition) of individuals of a single species. This is straightforward. But communities are unusual kinds of objects, if they are objects at all. They are collections consisting of other diverse, scattered, partly-autonomous, dynamic entities (that is, animals, plants, and other organisms). They often lack obvious boundaries or stable memberships, as their constituent populations not only change but also move in (...)
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  • Experimental localism and external validity.Francesco Guala - 2003 - Philosophy of Science 70 (5):1195-1205.
    Experimental “localism” stresses the importance of context‐specific knowledge, and the limitations of universal theories in science. I illustrate Latour's radical approach to localism and show that it has some unpalatable consequences, in particular the suggestion that problems of external validity (or how to generalize experimental results to nonlaboratory circumstances) cannot be solved. In the last part of the paper I try to sketch a solution to the problem of external validity by extending Mayo's error‐probabilistic approach.
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  • Ecological complexity.Alkistis Elliott-Graves - 2023 - New York, NY: Cambridge University Press.
    How does the complex nature of ecological systems affect ecologists' ability to study them? This Element argues that ecological systems are complex in a rather special way: they are causally heterogeneous. The author presents an updated philosophical account with an optimistic outlook of the methods and status of ecological research.
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  • (1 other version)Seeing the forest and the trees: Realism about communities and ecosystems.Jay Odenbaugh - 2007 - Philosophy of Science 74 (5):628-641.
    In this essay I first provide an analysis of various community concepts. Second, I evaluate two of the most serious challenges to the existence of communities—gradient and paleoecological analysis respectively—arguing that, properly understood, neither threatens the existence of communities construed interactively. Finally, I apply the same interactive approach to ecosystem ecology, arguing that ecosystems may exist robustly as well. ‡I would like to thank to the participants at the Ecology and Environmental Ethics Conference at the University of Utah, the Philosophy (...)
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  • The Aims and Structures of Ecological Research Programs.William Bausman - 2019 - Philosophical Topics 47 (1):1-20.
    Neutral Theory is controversial in ecology. Ecologists and philosophers have diagnosed the source of the controversy as: its false assumption that individuals in different species within the same trophic level are ecologically equivalent, its conflict with Competition Theory and the adaptation of species, its role as a null hypothesis, and as a Lakatosian research programme. In this paper, I show why we should instead understand the conflict at the level of research programs which involve more than theory. The Neutralist and (...)
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  • The Philosophy of Ecology: An Introduction.James Justus - 2021 - New York, USA: Cambridge University Press.
    Ecology is indispensable to understanding the biological world and addressing the environmental problems humanity faces. Its philosophy has never been more important. In this book, James Justus introduces readers to the philosophically rich issues ecology poses. Besides its crucial role in biological science generally, climate change, biodiversity loss, and other looming environmental challenges make ecology's role in understanding such threats and identifying solutions to them all the more critical. When ecology is applied and its insights marshalled to address these problems (...)
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  • (1 other version)Rethinking Wilderness.Mark Woods - 2017 - Peterborough, CA: Broadview Press.
    The concept and values of wilderness, along with the practice of wilderness preservation, have been under attack for the past several decades. In _Rethinking Wilderness_, Mark Woods responds to seven prominent anti-wilderness arguments. Woods offers a rethinking of the received concept of wilderness, developing a positive account of wilderness as a significant location for the other-than-human value-adding properties of naturalness, wildness, and freedom. Interdisciplinary in approach, the book combines environmental philosophy, environmental history, environmental social sciences, the science of ecology, and (...)
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  • Generality and Causal Interdependence in Ecology.Alkistis Elliott-Graves - 2018 - Philosophy of Science 85 (5):1102-1114.
    A hallmark of ecological research is dealing with complexity in the systems under investigation. One strategy is to diminish this complexity by constructing models and theories that are general. Alternatively, ecologists can constrain the scope of their generalizations to particular phenomena or types of systems. However, research employing the second strategy is often met with scathing criticism. I offer a theoretical argument in support of moderate generalizations in ecological research, based on the notions of interdependence and causal heterogeneity and their (...)
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  • Philosophical issues in ecology: Recent trends and future directions.Mark Colyvan, William Grey, Paul E. Griffiths, Jay Odenbaugh, Stefan Linquist & Hugh P. Possingham - 2009 - Ecology and Society 14 (2).
    Philosophy of ecology has been slow to become established as an area of philosophical interest, but it is now receiving considerable attention. This area holds great promise for the advancement of both ecology and the philosophy of science. Insights from the philosophy of science can advance ecology in a number of ways. For example, philosophy can assist with the development of improved models of ecological hypothesis testing and theory choice. Philosophy can also help ecologists understand the role and limitations of (...)
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  • Trade-offs in model-building: A more target-oriented approach.John Matthewson - 2011 - Studies in History and Philosophy of Science Part A 42 (2):324-333.
    In his 1966 paper “The Strategy of model-building in Population Biology”, Richard Levins argues that no single model in population biology can be maximally realistic, precise and general at the same time. This is because these desirable model properties trade-off against one another. Recently, philosophers have developed Levins’ claims, arguing that trade-offs between these desiderata are generated by practical limitations on scientists, or due to formal aspects of models and how they represent the world. However this project is not complete. (...)
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  • Making populations: Bounding genes in space and in time.Lisa Gannett - 2003 - Philosophy of Science 70 (5):989-1001.
    At least below the level of species, biological populations are not mind‐independent objects that scientists discover. Rather, biological populations are pragmatically constructed as objects of investigation according to the aims, interests, and values that inform particular research contexts. The relations among organisms that are constitutive of population‐level phenomena (e.g., mating propensity, genealogy, and competition) occur as matters of degree and so give rise to statistically defined open‐ended biological systems. These systems are rendered discrete units to satisfy practical needs and theoretical (...)
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  • Environmental philosophy: From theory to practice.Sahotra Sarkar - 2014 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 45 (1):89-91.
    Environmental philosophy is a hybrid discipline drawing extensively from epistemology, ethics, and philosophy of science and analyzing disciplines such as conservation biology, restoration ecology, sustainability studies, and political ecology. The book being discussed both provides an overview of environmental philosophy and develops an anthropocentric framework for it. That framework treats natural values as deep cultural values. Tradeoffs between natural values are analyzed using decision theory to the extent possible, leaving many interesting question for philosophical deliberation. This framework is supposed to (...)
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  • Local Ecological Communities.Kim Sterelny - 2006 - Philosophy of Science 73 (2):215-231.
    A phenomenological community is an identifiable assemblage of organisms in a local habitat patch: a local wetland or mudflat are typical examples. Such communities are typically persistent: membership and abundance stay fairly constant over time. In this paper I discuss whether phenomenological communities are functionally structured, causal systems that play a role in determining the presence and abundance of organisms in a local habitat patch. I argue they are not, if individualist models of community assembly are vindicated; i.e., if the (...)
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  • The Elusive Basis of Inferential Robustness.James Justus - 2012 - Philosophy of Science 79 (5):795-807.
    Robustness concepts are often invoked to manage two obstacles confronting models of ecological systems: complexity and uncertainty. The intuitive idea is that any result derived from many idealized but credible models is thereby made more reliable or is better confirmed. An appropriate basis for this inference has proven elusive. Here, several representations of robustness analysis are vetted, paying particular attention to complex models of ecosystems and the global climate. The claim that robustness is itself confirmatory because robustness analysis employs a (...)
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  • The scope of inductive risk.P. D. Magnus - 2022 - Metaphilosophy 53 (1):17-24.
    The Argument from Inductive Risk (AIR) is taken to show that values are inevitably involved in making judgements or forming beliefs. After reviewing this conclusion, I pose cases which are prima facie counterexamples: the unreflective application of conventions, use of black-boxed instruments, reliance on opaque algorithms, and unskilled observation reports. These cases are counterexamples to the AIR posed in ethical terms as a matter of personal values. Nevertheless, it need not be understood in those terms. The values which load a (...)
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  • The problem of prediction in invasion biology.Alkistis Elliott-Graves - 2016 - Biology and Philosophy 31 (3):373-393.
    Invasion biology is a relatively young discipline which is important, interesting and currently in turmoil. Biological invaders can threaten native ecosystems and global biodiversity; they can incur massive economic costs and even introduce diseases. Invasion biologists generally agree that being able to predict when and where an invasion will occur is essential for progress in their field. However, successful predictions of this type remain elusive. This has caused a rift, as some researchers are pessimistic and believe that invasion biology has (...)
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