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Traits, Genes, and Coding

In Michael Ruse (ed.), Philosophy of biology. Amherst, N.Y.: Prometheus Books. pp. 369--401 (1998)

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  1. Knowledge and the flow of information.F. Dretske - 1989 - Trans/Form/Ação 12:133-139.
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  • Developmental Systems and Evolutionary Explanation.P. E. Griffiths & R. D. Gray - 1994 - Journal of Philosophy 91 (6):277-304.
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  • The Mathematical Theory of Communication.Claude E. Shannon & Warren Weaver - 1949 - University of Illinois Press.
    Scientific knowledge grows at a phenomenal pace--but few books have had as lasting an impact or played as important a role in our modern world as The Mathematical Theory of Communication, published originally as a paper on communication theory more than fifty years ago. Republished in book form shortly thereafter, it has since gone through four hardcover and sixteen paperback printings. It is a revolutionary work, astounding in its foresight and contemporaneity. The University of Illinois Press is pleased and honored (...)
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  • Sex and Death: An Introduction to Philosophy of Biology. [REVIEW]Mohan Matthen - 2002 - Philosophical Books 43 (1):78-80.
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  • Reconstructing the Cognitive World: The Next Step.Michael Wheeler - 2005 - Bradford.
    In _Reconstructing the Cognitive World_, Michael Wheeler argues that we should turn away from the generically Cartesian philosophical foundations of much contemporary cognitive science research and proposes instead a Heideggerian approach. Wheeler begins with an interpretation of Descartes. He defines Cartesian psychology as a conceptual framework of explanatory principles and shows how each of these principles is part of the deep assumptions of orthodox cognitive science. Wheeler then turns to Heidegger's radically non-Cartesian account of everyday cognition, which, he argues, can (...)
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  • The tree of knowledge:The biological roots of human understanding.Humberto R. Maturana & Francisco J. Varela - 1992 - Cognition.
    "Knowing how we know" is the subject of this book. Its authors present a new view of cognition that has important social and ethical implications, for, they assert, the only world we humans can have is the one we create together through the actions of our coexistence. Written for a general audience as well as for students, scholars, and scientists and abundantly illustrated with examples from biology, linguistics, and new social and cultural phenomena, this revised edition includes a new afterword (...)
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  • Representational Genera.John Haugeland - 1998 - In Having Thought: Essays in the Metaphysics of Mind. Cambridge, Mass.: Harvard University Press. pp. 171-206.
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  • A Mathematical Theory of Communication.Claude Elwood Shannon - 1948 - Bell System Technical Journal 27 (April 1924):379–423.
    The mathematical theory of communication.
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  • Genetic information as instructional content.Ulrich E. Stegmann - 2005 - Philosophy of Science 72 (3):425-443.
    The concept of genetic information is controversial because it attributes semantic properties to what seem to be ordinary biochemical entities. I argue that nucleic acids contain information in a semantic sense, but only about a limited range of effects. In contrast to other recent proposals, however, I analyze genetic information not in terms of a naturalized account of biological functions, but instead in terms of the way in which molecules determine their products during processes known as template-directed syntheses. I argue (...)
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  • Nongenetic selection and nongenetic inheritance.Matteo Mameli - 2004 - British Journal for the Philosophy of Science 55 (1):35-71.
    According to the received view of evolution, only genes are inherited. From this view it follows that only genetically-caused phenotypic variation is selectable and, thereby, that all selection is at bottom genetic selection. This paper argues that the received view is wrong. In many species, there are intergenerationally-stable phenotypic differences due to environmental differences. Natural selection can act on these nongenetically-caused phenotypic differences in the same way it acts on genetically-caused phenotypic differences. Some selection is at bottom nongenetic selection. The (...)
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  • Function, homology and character individuation.Paul E. Griffiths - 2006 - Philosophy of Science 73 (1):1-25.
    I defend the view that many biological categories are defined by homology against a series of arguments designed to show that all biological categories are defined, at least in part, by selected function. I show that categories of homology are `abnormality inclusive'—something often alleged to be unique to selected function categories. I show that classifications by selected function are logically dependent on classifications by homology, but not vice-versa. Finally, I reject the view that biologists must use considerations of selected function (...)
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  • The return of the Gene.Kim Sterelny & Philip Kitcher - 1988 - Journal of Philosophy 85 (7):339-361.
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  • Understanding life: Recent work in philosophy of biology.Kim Sterelny - 1995 - British Journal for the Philosophy of Science 46 (2):155-183.
    This paper surveys recent philosophy of biology. It aims to introduce outsiders to the field to the recent literature (which is reviewed in the footnotes) and the main recent debates. I concentrate on three of these: recent critiques of the replicator/vehicle distinction and its application to the idea of the gene as the unit of section; the recent defences of group selection and the idea that standard alternatives to group selection are in fact no more than a disguised form of (...)
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  • Information in genetics and developmental biology: Comments on Maynard Smith.Sahotra Sarkar - 2000 - Philosophy of Science 67 (2):208-213.
    Maynard Smith notes that he provides a natural history and not a philosophical analysis of the use of concepts of information in contemporary biology. Just a natural history, however rich, would do little to resolve the ongoing controversy about the role of these concepts in biology. None of the disputants deny that the biological use of these concepts is pervasive. The dispute is about whether these concepts—and the framework in which they are embedded—continue to be of explanatory value in contemporary (...)
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  • What is the developmentalist challenge?Paul E. Griffiths & Robin D. Knight - 1998 - Philosophy of Science 65 (2):253-258.
    Kenneth C. Schaffner's paper is an important contribution to the literature on behavioral genetics and on genetics in general. Schaffner has a long record of injecting real molecular biology into philosophical discussions of genetics. His treatments of the reduction of Mendelian to molecular genetics first drew philosophical attention to the problems of detail that have fuelled both anti-reductionism and more sophisticated models of theory reduction. An injection of molecular detail into discussions of genetics is particularly necessary at the present time, (...)
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  • Computation and Cognition: Toward a Foundation for Cognitive Science.Zenon W. Pylyshyn - 1984 - Cambridge: MIT Press.
    This systematic investigation of computation and mental phenomena by a noted psychologist and computer scientist argues that cognition is a form of computation, that the semantic contents of mental states are encoded in the same general way as computer representations are encoded. It is a rich and sustained investigation of the assumptions underlying the directions cognitive science research is taking. 1 The Explanatory Vocabulary of Cognition 2 The Explanatory Role of Representations 3 The Relevance of Computation 4 The Psychological Reality (...)
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  • Functional analysis.Robert E. Cummins - 1975 - Journal of Philosophy 72 (November):741-64.
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  • Knowledge and the Flow of Information.Fred I. Dretske - 1981 - Stanford, CA: MIT Press.
    This book presents an attempt to develop a theory of knowledge and a philosophy of mind using ideas derived from the mathematical theory of communication developed by Claude Shannon. Information is seen as an objective commodity defined by the dependency relations between distinct events. Knowledge is then analyzed as information caused belief. Perception is the delivery of information in analog form for conceptual utilization by cognitive mechanisms. The final chapters attempt to develop a theory of meaning by viewing meaning as (...)
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  • White Queen Psychology and Other Essays for Alice. [REVIEW]Ralph Wedgwood - 1995 - Philosophical Review 104 (1):156.
    This is a review of Ruth Garrett Millikan's 1993 book, White Queen Psychology and Other Essays for Alice.
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  • The Return of the Gene.Kim Sterelny & Philip Kitcher - 1988 - Journal of Philosophy 85 (7):339.
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  • Genic representation: Reconciling content and causal complexity.M. Wheeler & A. Clark - 1999 - British Journal for the Philosophy of Science 50 (1):103-135.
    Some recent cognitive-scientific research suggests that a considerable amount of intelligent action is generated not by the systematic activity of internal representations, but by complex interactions involving neural, bodily, and environmental factors. Following an analysis of this threat to representational explanation, we pursue an analogy between the role of genes in the production of biological form and the role of neural states in the production of behaviour, in order to develop a notion of genic representation. In both cases an appeal (...)
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  • The "genetic program" program: A commentary on Maynard Smith on information in biology.Kim Sterelny - 2000 - Philosophy of Science 67 (2):195-201.
    In many texts on evolution the reader will find a characteristic depiction of inheritance and evolution, one showing the generations of an evolving population linked only by a causal flow from genotype to genotype. On this view, the genotype of each organism in this population plays a dual role as both the motor of individual development and as the sole causal channel across the generations. This picture is known to be literally false. In many species, parents exert direct causal influence (...)
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  • The inheritance of features.Matteo Mameli - 2005 - Biology and Philosophy 20 (2-3):365-399.
    Since the discovery of the double helical structure of DNA, the standard account of the inheritance of features has been in terms of DNA-copying and DNA-transmission. This theory is just a version of the old theory according to which the inheritance of features is explained by the transfer at conception of some developmentally privileged material from parents to offspring. This paper does the following things: (1) it explains what the inheritance of features is; (2) it explains how the DNA-centric theory (...)
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  • Genetic information: A metaphor in search of a theory.Paul Edmund Griffiths - 2001 - Philosophy of Science 68 (3):394-412.
    John Maynard Smith has defended against philosophical criticism the view that developmental biology is the study of the expression of information encoded in the genes by natural selection. However, like other naturalistic concepts of information, this ‘teleosemantic’ information applies to many non-genetic factors in development. Maynard Smith also fails to show that developmental biology is concerned with teleosemantic information. Some other ways to support Maynard Smith’s conclusion are considered. It is argued that on any definition of information the view that (...)
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  • White Queen Psychology and Other Essays for Alice.Ruth Garrett Millikan - 1993 - MIT Press.
    This collection of essays serves both as an introduction to Ruth Millikan’s much-discussed volume Language, Thought, and Other Biological Categories and as an extension and application of Millikan’s central themes, especially in the philosophy of psychology. The title essay discusses meaning rationalism and argues that rationality is not in the head, indeed, that there is no legitimate interpretation under which logical possibility and necessity are known a priori. In other essays, Millikan clarifies her views on the nature of mental representation, (...)
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  • Foundations of Biophilosophy.Martin Mahner & Mario Bunge - 2013 - Springer Verlag.
    Over the past three decades, the philosophy of biology has emerged from the shadow of the philosophy of physics to become a respectable and thriving philosophical subdiscipline. The authors take a fresh look at the life sciences and the philosophy of biology from a strictly realist and emergentist-naturalist perspective. They outline a unified and science-oriented philosophical framework that enables the clarification of many foundational and philosophical issues in biology. This book will be of interest both to life scientists and philosophers.
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  • Information, arbitrariness, and selection: Comments on Maynard Smith.Peter Godfrey-Smith - 2000 - Philosophy of Science 67 (2):202-207.
    Maynard Smith is right that one of the most striking features of contemporary biology is the ever-increasing prominence of the concept of information, along with related concepts like representation, programming, and coding. Maynard Smith is also right that this is surely a phenomenon which philosophers of science should examine closely. We should try to understand exactly what sorts of theoretical commitment are made when biological systems are described in these terms, and what connection there is between semantic descriptions in biology (...)
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  • On the theoretical role of "genetic coding".Peter Godfrey-Smith - 2000 - Philosophy of Science 67 (1):26-44.
    The role played by the concept of genetic coding in biology is discussed. I argue that this concept makes a real contribution to solving a specific problem in cell biology. But attempts to make the idea of genetic coding do theoretical work elsewhere in biology, and in philosophy of biology, are probably mistaken. In particular, the concept of genetic coding should not be used (as it often is) to express a distinction between the traits of whole organisms that are coded (...)
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  • Are There Genes?John Dupré - 2005 - Royal Institute of Philosophy Supplement 56:16-17.
    Contrary to one possible interpretation of my title, this paper will not advocate any scepticism or ontological deflation. My concern will rather be with how we should best think about a realm of phenomena the existence of which is in no doubt, what has traditionally been referred to as the genetic. I have no intention of questioning a very well established scientific consensus on this domain. It involves the chemical DNA, which resides in almost all our cells, which is capable (...)
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  • Do Genes Code for Traits?Michael Wheeler - 2003 - In A. Rojszczak, J. Cachro & G. Kurczewski (eds.), Philosophical Dimensions of Logic and Science. Kluwer Academic Publishers. pp. 151--164.
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