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  1. Reconceptualizing the Organism: From Complex Machine to Flowing Stream.Daniel J. Nicholson - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press.
    This chapter draws on insights from non-equilibrium thermodynamics to demonstrate the ontological inadequacy of the machine conception of the organism. The thermodynamic character of living systems underlies the importance of metabolism and calls for the adoption of a processual view, exemplified by the Heraclitean metaphor of the stream of life. This alternative conception is explored in its various historical formulations and the extent to which it captures the nature of living systems is examined. Following this, the chapter considers the metaphysical (...)
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  • Genidentity and Biological Processes.Thomas Pradeu - 2018 - In Daniel J. Nicholson & John Dupré (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford, United Kingdom: Oxford University Press.
    A crucial question for a process view of life is how to identify a process and how to follow it through time. The genidentity view can contribute decisively to this project. It says that the identity through time of an entity X is given by a well-identified series of continuous states of affairs. Genidentity helps address the problem of diachronic identity in the living world. This chapter describes the centrality of the concept of genidentity for David Hull and proposes an (...)
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  • The self model and the conception of biological identity in immunology.Thomas Pradeu & Edgardo D. Carosella - 2006 - Biology and Philosophy 21 (2):235-252.
    The self/non-self model, first proposed by F.M. Burnet, has dominated immunology for 60 years now. According to this model, any foreign element will trigger an immune reaction in an organism, whereas endogenous elements will not, in normal circumstances, induce an immune reaction. In this paper we show that the self/non-self model is no longer an appropriate explanation of experimental data in immunology, and that this inadequacy may be rooted in an excessively strong metaphysical conception of biological identity. We suggest that (...)
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  • The Identity of Living Beings, Epigenetics, and the Modesty of Philosophy.Giovanni Boniolo & Giuseppe Testa - 2012 - Erkenntnis 76 (2):279-298.
    Two problems related to the biological identity of living beings are faced: the who-problem (which are the biological properties making that living being unique and different from the others?); the persistence-problem (what does it take for a living being to persist from a time to another?). They are discussed inside a molecular biology framework, which shows how epigenetics can be a good ground to provide plausible answers. That is, we propose an empirical solution to the who-problem and to the persistence-problem (...)
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  • Particulars.Johanna Seibt - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 23--55.
    According to the standard view of particularity, an entity is a particular just in case it necessarily has a unique spatial location at any time of its existence. That the basic entities of the world we speak about in common sense and science are particular entities in this sense is the thesis of “foundational particularism,” a theoretical intuition that has guided Western ontological research from its beginnings to the present day. The main aim of this paper is to review the (...)
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  • (1 other version)Institutional Genidentity.Joshua Rust - 2024 - Journal of the American Philosophical Association 10 (4):695-714.
    An abbreviated history of marriage helps motivate the question of whether ancient Roman marriage and contemporary love marriage could qualify as stages of the same (token) institution despite carrying significantly different functions, deontological powers, and constitutive rules. Having raised the question of institutional identity over time, I proceed to answer the question by appealing to Kurt Lewin's notion of genidentity. Lewin intends the notion of genidentity to track the spatiotemporal unfolding of different physical and biological processes, such as ontogenesis. I (...)
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  • Ontology and Methodology in Analytic Philosophy.John Symons - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 349--394.
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  • Interactive knowing: The metaphysics of intentionality.Mark H. Bickhard - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 207--229.
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  • Animalism, Abortion, and a Future Like Ours.Andrea Sauchelli - 2019 - The Journal of Ethics 23 (3):317-332.
    Marquis’ future-like-ours argument against the morality of abortion assumes animalism—a family of theories according to which we are animals. Such an assumption is theoretically useful for various reasons, e.g., because it provides the theoretical underpinning for a reply to the contraception-abstinence objection. However, the connection between the future-like-ours argument and one popular version of animalism can prove lethal to the former, or so I argue in this paper.
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  • Becoming organisms. The development of organisation and the organisation of development.Laura Nuño de la Rosa - 2010 - History and Philosophy of Life Sciences 32:289-316.
    Despite the radical importance of embryology in the development of organi- cism, developmental biology remains philosophically underexplored as a theoretical and empirical resource to clarify the nature of organisms. This paper discusses how embryology can help develop the organisational definition of the organism as a differentiated, function- ally integrated, and autonomous system. I distinguish two conceptions of development in the organisational tradition that yield two different conceptions of the organism: the life- history view claims that organisms can be considered as (...)
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  • The role of logic and ontology in language and reasoning.John F. Sowa - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 231--263.
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  • The ontology of perception.Liliana Albertazzi - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 177--206.
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  • The Ontogenesis of Human Identity.Giovanni Boniolo - 2005 - Royal Institute of Philosophy Supplement 56:5-6.
    “ >. Das hiess doch: Wenn du dir gewisse Tatsachen anders denkst,sie anders beschreibst, als sie sind, dann kannst du die Anwendung gewisser Begriffe dir nicht mehr vorstellen, weil die Regeln ihrer Anwendung kein Analogon unter den neuen Umständen haben.”.
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  • Hermeneutic Ontology.Daniel O. Dahlstrom - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 395--415.
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  • The ontology of mereological systems: A logical approach.Heinrich Herre - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 57--82.
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  • Taxa, individuals, clusters and a few other things.Donald H. Colless - 2006 - Biology and Philosophy 21 (3):353-367.
    The recognition of species proceeds by two fairly distinct phases: (1) the sorting of individuals into groups or basic taxa (‘discovery’) (2) the checking of those taxa as candidates for species-hood (‘justification’). The target here is a rational reconstruction of phase 1, beginning with a discussion of key terms. The transmission of ‘meaning’ is regarded as bimodal: definition states the intension of the term, and diagnosis provides a disjunction of criteria for recognition of its extension. The two are connected by (...)
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  • Causation.Asbjørn Steglich-Petersen - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 83--104.
    Causation is of undeniable importance to our understanding of, and interaction with our surroundings. Despite this, the correct understanding of causation remains subject to considerable philosophical controversy. In this article, I introduce the most influential philosophical theories of causation, and provide an overview of the main difficulties that has led to the currently most popular versions of these theories.
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  • Actualism versus Possibilism in Formal Ontology.Nino Cocchiarella - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 105--117.
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  • Phenomenology and Ontology in Nicolai Hartmann and Roman Ingarden.Nicoletta Ghigi - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 329--347.
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  • Ontologies in the Legal Domain.Laurens Mommers - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 265--276.
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  • Properties.Frédéric Nef - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 135--151.
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  • Ontology in Economics.Jason Potts - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 277--285.
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  • Boundary Questions Between Ontology and Biology.Pietro Ramellini - 2010 - In Roberto Poli & Johanna Seibt (eds.), Theory and Applications of Ontology: Philosophical Perspectives. Springer Verlag. pp. 153--175.
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