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The origin of species

New York: Norton. Edited by Philip Appleman (1859)

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  1. Meaning and Purpose: Using Phylogenies to Investigate Human History and Cultural Evolution.Lindell Bromham - 2023 - Biological Theory 18 (4):284-302.
    Phylogenies are increasingly being used to investigate human history, diversification and cultural evolution. While using phylogenies in this way is not new, new modes of analysis are being applied to inferring history, reconstructing past states, and examining processes of change. Phylogenies have the advantage of providing a way of creating a continuous history of all current populations, and they make a large number of analyses and hypothesis tests possible even when other forms of historical information are patchy or nonexistent. In (...)
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  • Identifying Behavioral Novelty.Rachael L. Brown - 2014 - Biological Theory 9 (2):135-148.
    Although there is no in-principle impediment to an EvoDevo of behavior, such an endeavor is not as straightforward as one might think; many of the key terms and concepts used in EvoDevo are tailored to suit its traditional focus on morphology, and are consequently difficult to apply to behavior. In this light, the application of the EvoDevo conceptual toolkit to the behavioral domain requires the establishment of a set of tractable concepts that are readily applicable to behavioral characters. Here, I (...)
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  • Embedded structure and the evolution of phonology.Jason Brown & Chris Golston - 2006 - Interaction Studies. Social Behaviour and Communication in Biological and Artificial Systemsinteraction Studies / Social Behaviour and Communication in Biological and Artificial Systemsinteraction Studies 7 (1):17-41.
    This paper explores a structure ubiquitous in grammar, the embedded tree, and develops a proposal for how such embedded structures played a fundamental role in the evolution of consonants and vowels. Assuming that linguistic capabilities emerged as a cognitive system from a simply reactive system and that such a transition required the construction of an internal mapping of the system body, we propose that this mapping was determined through articulation and acoustics. By creating distinctions between articulators in the vocal tract (...)
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  • Curiously the same: swapping tools between linguistics and evolutionary biology.Lindell Bromham - 2017 - Biology and Philosophy 32 (6):855-886.
    One of the major benefits of interdisciplinary research is the chance to swap tools between fields, to save having to reinvent the wheel. The fields of language evolution and evolutionary biology have been swapping tools for centuries to the enrichment of both. Here I will discuss three categories of tool swapping: conceptual tools, where analogies are drawn between hypotheses, patterns or processes, so that one field can take advantage of the path cut through the intellectual jungle by the other; theoretical (...)
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  • Ecosemiotics and the sustainability transition.Soren Brier - 2001 - Sign Systems Studies 29 (1):219-234.
    The emerging epistemic community of ecosemioticians and the multidisciplinary field of inquiry known as ecosemiotics offer a radical and relevant approach to so-called global environmental crisis. There are no environmental fixes within the dominant code, since that code overdetermines the future, thereby perpetuating ecologically untenable cultural forms. The possibility of a sustainability transition (the attempt to overcome destitution and avoid ecocatastrophe) becomes real when mediated by and through ecosemiotics. In short, reflexive awareness of humankind's linguisticality is a necessary condition for (...)
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  • A Peircean Panentheist Scientific Mysticism.Søren Brier - 2008 - International Journal of Transpersonal Studies 27 (1):20-45.
    Peirce’s philosophy can be interpreted as an integration of mysticism and science. In Peirce’s philosophy mind is feeling on the inside and on the outside, spontaneity, chance and chaos with a tendency to take habits. Peirce’s philosophy has an emptiness beyond the three worlds of reality , which is the source from where the categories spring. He emphasizes that God cannot be conscious in the way humans are, because there is no content in his “mind.” Since there is a transcendental (...)
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  • Natural selection according to Darwin: cause or effect?Ben Bradley - 2022 - History and Philosophy of the Life Sciences 44 (2):1-26.
    In the 1940s, the ‘modern synthesis’ (MS) of Darwinism and genetics cast genetic mutation and recombination as the source of variability from which environmental events naturally select the fittest, such ‘natural selection’ constituting the cause of evolution. Recent biology increasingly challenges this view by casting genes as followers and awarding the leading role in the genesis of adaptations to the agency and plasticity of developing phenotypes—making natural selection a consequence of other causal processes. Both views of natural selection claim to (...)
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  • Darwin’s Sublime: The Contest Between Reason and Imagination in On the Origin of Species. [REVIEW]Benjamin Sylvester Bradley - 2011 - Journal of the History of Biology 44 (2):205 - 232.
    Recent Darwin scholarship has provided grounds for recognising the Origin as a literary as well as a scientific achievement. While Darwin was an acute observer, a gifted experimentalist and indefatigable theorist, this essay argues that it was also crucial to his impact that the Origin transcended the putative divide between the scientific and the literary. Analysis of Darwin's development as a writer between his journal-keeping on HMS Beagle and his construction of the Origin argues the latter draws on the pattern (...)
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  • The mismeasure of machine: Synthetic biology and the trouble with engineering metaphors.Maarten Boudry & Massimo Pigliucci - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):660-668.
    The scientific study of living organisms is permeated by machine and design metaphors. Genes are thought of as the ‘‘blueprint’’ of an organism, organisms are ‘‘reverse engineered’’ to discover their functionality, and living cells are compared to biochemical factories, complete with assembly lines, transport systems, messenger circuits, etc. Although the notion of design is indispensable to think about adaptations, and engineering analogies have considerable heuristic value (e.g., optimality assumptions), we argue they are limited in several important respects. In particular, the (...)
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  • The mismeasure of machine: Synthetic biology and the trouble with engineering metaphors.Maarten Boudry & Massimo Pigliucci - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences (4):660-668.
    The scientific study of living organisms is permeated by machine and design metaphors. Genes are thought of as the ‘‘blueprint’’ of an organism, organisms are ‘‘reverse engineered’’ to discover their func- tionality, and living cells are compared to biochemical factories, complete with assembly lines, transport systems, messenger circuits, etc. Although the notion of design is indispensable to think about adapta- tions, and engineering analogies have considerable heuristic value (e.g., optimality assumptions), we argue they are limited in several important respects. In (...)
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  • Handbook of Evolutionary Thinking in the Sciences.Thomas Heams, Philippe Huneman, Guillaume Lecointre & Marc Silberstein (eds.) - 2015 - Springer.
    The Darwinian theory of evolution is itself evolving and this book presents the details of the core of modern Darwinism and its latest developmental directions. The authors present current scientific work addressing theoretical problems and challenges in four sections, beginning with the concepts of evolution theory, its processes of variation, heredity, selection, adaptation and function, and its patterns of character, species, descent and life. The second part of this book scrutinizes Darwinism in the philosophy of science and its usefulness in (...)
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  • Ecosystems and society: Implications for sustainable development.Hartmut Bossel - 1996 - World Futures 47 (2):143-213.
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  • Using models to correct data: paleodiversity and the fossil record.Alisa Bokulich - 2018 - Synthese 198 (Suppl 24):5919-5940.
    Despite an enormous philosophical literature on models in science, surprisingly little has been written about data models and how they are constructed. In this paper, I examine the case of how paleodiversity data models are constructed from the fossil data. In particular, I show how paleontologists are using various model-based techniques to correct the data. Drawing on this research, I argue for the following related theses: first, the ‘purity’ of a data model is not a measure of its epistemic reliability. (...)
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  • From Cells to Structures to Evolutionary Novelties: Creating a Continuum.Catherine Anne Boisvert - 2013 - Biological Theory 8 (3):211-220.
    This thematic issue addresses questions of constraints on the evolution of form—physical, biological, and technical. Here, form is defined as an embodiment of a specific structure, which can be hierarchically different yet emerge from the same processes. The focus of this contribution is about how developmental biology and paleontology can be better integrated and compared in order to produce hypotheses about the evolution of form. The constraints on current EvoDevo research stem from the disconnect in the focus of study for (...)
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  • Proximate and Ultimate Perspectives on Romantic Love.Adam Bode & Geoff Kushnick - 2021 - Frontiers in Psychology 12.
    Romantic love is a phenomenon of immense interest to the general public as well as to scholars in several disciplines. It is known to be present in almost all human societies and has been studied from a number of perspectives. In this integrative review, we bring together what is known about romantic love using Tinbergen’s “four questions” framework originating from evolutionary biology. Under the first question, related to mechanisms, we show that it is caused by social, psychological mate choice, genetic, (...)
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  • Dual Causality and the Autonomy of Biology.Walter J. Bock - 2017 - Acta Biotheoretica 65 (1):63-79.
    Ernst Mayr’s concept of dual causality in biology with the two forms of causes continues to provide an essential foundation for the philosophy of biology. They are equivalent to functional and evolutionary causes with both required for full biological explanations. The natural sciences can be classified into nomological, historical nomological and historical dual causality, the last including only biology. Because evolutionary causality is unique to biology and must be included for all complete biological explanations, biology is autonomous from the physical (...)
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  • Alpheus Spring Packard and cave fauna in the evolution debate.Stephen Bocking - 1988 - Journal of the History of Biology 21 (3):425-456.
    Packard attempted to incorporate cave fauna into a general theory of evolution that would be consistent with the principle of recapitulation, and would have as the primary mechanism the inheritance of the effects of the environment. Beyond this, he also attempted to demonstrate that the evolution of cave fauna was consistent with progressive evolution. The use he made of comparative anatomy and embryology places him within the tradition of classical morphology that was dominant through much of the last half of (...)
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  • Truth in an Evolutionary Perspective.Carlos Blanco - 2014 - Scientia et Fides 2 (1):203-220.
    The perspective drawn from evolutionary science, undoubtedly one of the most remarkable intellectual achievements in our conception of the world, poses a deep challenge to epistemology and the meaning of truth. The present paper aims to examine the difficulties offered by the prevailing biological model for the emergence and development of mind in its attempt at constructing a possible philosophical theory of truth. We propose a solution which, while preserving the priority of the distinction between truth and falsehood, is nonetheless (...)
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  • Inclusive Fitness as a Criterion for Improvement.Jonathan Birch - 2019 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 76:101186.
    I distinguish two roles for a fitness concept in the context of explaining cumulative adaptive evolution: fitness as a predictor of gene frequency change, and fitness as a criterion for phenotypic improvement. Critics of inclusive fitness argue, correctly, that it is not an ideal fitness concept for the purpose of predicting gene-frequency change, since it relies on assumptions about the causal structure of social interaction that are unlikely to be exactly true in real populations, and that hold as approximations only (...)
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  • Has Grafen Formalized Darwin?Jonathan Birch - 2014 - Biology and Philosophy 29 (2):175-180.
    One key aim of Grafen’s Formal Darwinism project is to formalize ‘modern biology’s understanding and updating of Darwin’s central argument’. In this commentary, I consider whether Grafen has succeeded in this aim.
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  • Observational Learning From Internal Feedback: A Simulation of an Adaptive Learning Method.Dorrit Billman & Evan Heit - 1988 - Cognitive Science 12 (4):587-625.
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  • Saving sociobiology: The use and abuse of logic.Irwin S. Bernstein - 1987 - Behavioral and Brain Sciences 10 (1):73-73.
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  • Spiral dependence between theories and taxonomy1.Berent Enç - 1976 - Inquiry: An Interdisciplinary Journal of Philosophy 19 (1-4):41-71.
    This paper analyses the traditionally recognized dependence between observation statements and theories. The analysis proceeds by working out the interrelationship between classification systems and theoretical frameworks. Cuvier's and Darwin's theories are used as examples to illustrate this issue. The second part of the paper develops a model designed to give an account of the historical development of this interrelationship. It is argued that the interdependence is not circular and that it is an integral part of scientific research. It is suggested (...)
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  • Self-organization and irreducibly complex systems: A reply to Shanks and Joplin.Michael J. Behe - 2000 - Philosophy of Science 67 (1):155-162.
    Some biochemical systems require multiple, well-matched parts in order to function, and the removal of any of the parts eliminates the function. I have previously labeled such systems "irreducibly complex," and argued that they are stumbling blocks for Darwinian theory. Instead I proposed that they are best explained as the result of deliberate intelligent design. In a recent article Shanks and Joplin analyze and find wanting the use of irreducible complexity as a marker for intelligent design. Their primary counterexample is (...)
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  • In Search of the Proper Scientific Approach: Hayek's Views on Biology, Methodology, and the Nature of Economics.Naomi Beck - 2009 - Science in Context 22 (4):567-585.
    ArgumentFriedrich August von Hayek is mainly known for his defense of free-market economics and liberalism. His views on science – more specifically on the methodological differences between the physical sciences on the one hand, and evolutionary biology and the social sciences on the other – are less well known. Yet in order to understand, and properly evaluate Hayek's political position, we must look at the theory of scientific method that underpins it. Hayek believed that a basic misunderstanding of the discipline (...)
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  • Criticism and realism.Jon Beckwith - 1987 - Behavioral and Brain Sciences 10 (1):72-73.
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  • The Creativity of Natural Selection? Part I: Darwin, Darwinism, and the Mutationists.John Beatty - 2016 - Journal of the History of Biology 49 (4):659-684.
    This is the first of a two-part essay on the history of debates concerning the creativity of natural selection, from Darwin through the evolutionary synthesis and up to the present. Here I focus on the mid-late nineteenth century to the early twentieth, with special emphasis on early Darwinism and its critics, the self-styled “mutationists.” The second part focuses on the evolutionary synthesis and some of its critics, especially the “neutralists” and “neo-mutationists.” Like Stephen Gould, I consider the creativity of natural (...)
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  • Familiarity out-breeds.Patrick Bateson - 1987 - Behavioral and Brain Sciences 10 (1):71-72.
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  • The logical relation between cultural and biological evolution: On to the next question.Jerome H. Barkow - 1981 - Behavioral and Brain Sciences 4 (2):235-236.
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  • The evolutionary community concept is fully armed and operational: a reply to Sagoff.Kyle Barrett, Craig Guyer & David A. Steen - 2020 - Biology and Philosophy 35 (6):1-9.
    In 2017 we published a paper in this journal proposing a philosophical framework for recognizing ecological communities as natural entities, the Evolutionary Community Concept. That paper attracted a lengthy reply; herein we take the opportunity to clarify critical aspects of the ECC and use a case study to demonstrate how the ECC can be made operational. We maintain the ECC provides a framework useful for establishing objectives associated with ongoing and proposed restoration and conservation efforts.
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  • From the Common Ancestor to the First Cells: The Code Theory.Marcello Barbieri - 2016 - Biological Theory 11 (2):102-112.
    The phylogenetic trees reconstructed from molecular data have led to the discovery that all living creatures belong to three primary kingdoms, or domains, because there are three types of cells in nature. The primary kingdoms are referred to as Archaea, Bacteria, and Eukaya, and their first representatives were the first modern cells that appeared on Earth. All known cells, on the other hand, contain a virtually universal genetic code, and this implies that the code evolved in a population of primitive (...)
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  • Towards a Critical Philosophy of Science: Continental Beginnings and Bugbears, Whigs, and Waterbears.Babette Babich - 2010 - International Studies in the Philosophy of Science 24 (4):343-391.
    Continental philosophy of science has developed alongside mainstream analytic philosophy of science. But where continental approaches are inclusive, analytic philosophies of science are not–excluding not merely Nietzsche’s philosophy of science but Gödel’s philosophy of physics. As a radicalization of Kant, Nietzsche’s critical philosophy of science puts science in question and Nietzsche’s critique of the methodological foundations of classical philology bears on science, particularly evolution as well as style (in art and science). In addition to the critical (in Mach, Nietzsche, Heidegger (...)
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  • The Equality–Inequality Dialectics.Amos Avny - 2020 - Philosophy Study 10 (6).
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  • Razão E desrazão em política: Sobre a alegada “ciência política” de maquiavel.Diogo Pires Aurélio - 2015 - Cadernos Espinosanos 32:15.
    Maquiavel é geralmente considerado um precursor, senão mesmo o criador, da ciência política. Tal interpretação vê na obra do Florentino uma sistematização da racionalidade intrínseca à ação humana. Com tonalidades distintas, podemos vê-la em autores tão diferentes como Hegel, Meinecke ou Leo Strauss, que atribuem a Maquiavel a intuição do estado como princípio subjacente à autonomia do político e ao realismo. Estará, no entanto, esse princípio realmente presente na obra de Maquiavel? O presente texto questiona semelhante hipótese, sustentando, ao invés, (...)
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  • Competition and the enculturation of science.Robert Augros & George Stanciu - 1991 - World Futures 31 (2):85-94.
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  • Power's blind struggle for existence: Foucault, genealogy and Darwinism.Peter Atterton - 1994 - History of the Human Sciences 7 (4):1-20.
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  • Darwin's doubt, non-deterministic Darwinism and the cognitive science of religion.Robin Attfield - 2010 - Philosophy 85 (4):465-483.
    Alvin Plantinga, echoing a worry of Charles Darwin which he calls 'Darwin's doubt', argues that given Darwinian evolutionary theory our beliefs are unreliable, since they are determined to be what they are by evolutionary pressures and could have had no other content. This papers surveys in turn deterministic and non-deterministic interpretations of Darwinism, and concludes that Plantinga's argument poses a problem for the former alone and not for the latter. Some parallel problems arise for the Cognitive Science of Religion, and (...)
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  • Morality as an Evolutionary Exaptation.Marcus Arvan - 2021 - In Johan De Smedt & Helen De Cruz (eds.), Empirically Engaged Evolutionary Ethics. Synthese Library. Springer - Synthese Library. pp. 89-109.
    The dominant theory of the evolution of moral cognition across a variety of fields is that moral cognition is a biological adaptation to foster social cooperation. This chapter argues, to the contrary, that moral cognition is likely an evolutionary exaptation: a form of cognition where neurobiological capacities selected for in our evolutionary history for a variety of different reasons—many unrelated to social cooperation—were put to a new, prosocial use after the fact through individual rationality, learning, and the development and transmission (...)
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  • Scientific revolution and the evolution of consciousness.Robert Artigiani - 1988 - World Futures 25 (3):237-281.
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  • Edward Hitchcock’s Pre-Darwinian “Tree of Life”.J. David Archibald - 2009 - Journal of the History of Biology 42 (3):561 - 592.
    The "tree of life" iconography, representing the history of life, dates from at least the latter half of the 18th century, but evolution as the mechanism providing this bifurcating history of life did not appear until the early 19th century. There was also a shift from the straight line, scala naturae view of change in nature to a more bifurcating or tree-like view. Throughout the 19th century authors presented tree-like diagrams, some regarding the Deity as the mechanism of change while (...)
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  • Jeffries Wyman, philosophical anatomy, and the scientific reception of Darwin in America.Toby A. Appel - 1988 - Journal of the History of Biology 21 (1):69-94.
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  • Drift: A historical and conceptual overview.Anya Plutynski - 2007 - Biological Theory 2 (2):156-167.
    There are several different ways in which chance affects evolutionary change. That all of these processes are called “random genetic drift” is in part a due to common elements across these different processes, but is also a product of historical borrowing of models and language across different levels of organization in the biological hierarchy. A history of the concept of drift will reveal the variety of contexts in which drift has played an explanatory role in biology, and will shed light (...)
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  • Evolutionary drive: The effect of microscopic diversity, error making, and noise. [REVIEW]P. M. Allen & J. M. McGlade - 1987 - Foundations of Physics 17 (7):723-738.
    In order to model any macroscopic system, it is necessary to aggregate both spatially and taxonomically. If average processes are assumed, then kinetic equations of “population dynamics” can be derived. Much effort has gone into showing the important effects introduced by non-average effects (fluctuations) in generating symmetry-breaking transitions and creating structure and form. However, the effects of microscopic diversity have been largely neglected. We show that evolution will select for populations which retain “variability,” even though this is, at any given (...)
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  • Is Evolution a Chance Process?Denis Alexander - 2020 - Scientia et Fides 8 (2):15-41.
    It is commonly thought that evolution is a chance process, an idea found in popular writings on evolution, but also in academic writing in a broad range of scientific disciplines: scientific, philosophical and theological. One problem is that words such as ‘chance’ and ‘random’ are used with a range of different meanings according to context, and in evolutionary biology the word ‘chance’ is sometimes used in a way that is different from its use in mathematics and philosophy. The present article (...)
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  • Does God roll dice? Neutrality and determinism in evolutionary ecology.Som B. Ale, Abdel Halloway, William A. Mitchell & Christopher J. Whelan - 2019 - Biology and Philosophy 34 (1):3.
    A tension between perspectives that emphasize deterministic versus stochastic processes has sparked controversy in ecology since pre-Darwinian times. The most recent manifestation of the contrasting perspectives arose with Hubbell’s proposed “neutral theory”, which hypothesizes a paramount role for stochasticity in ecological community composition. Here we shall refer to the deterministic and the stochastic perspectives as the niche-based and neutral-based research programs, respectively. Our goal is to represent these perspectives in the context of Lakatos’ notion of a scientific research program. We (...)
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  • Henri Bergson: Evolution, time and philosophy.Gregory Dale Adamson - 1999 - World Futures 54 (2):135-162.
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  • Past experiences and recent challenges in participatory design research.Susanne Bødker - 2009 - In Annalisa Sannino, Harry Daniels & Kris D. Gutierrez (eds.), Learning and expanding with activity theory. New York: Cambridge University Press. pp. 274--285.
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  • Expansive agency in multi-activity collaboration.Katsuhiro Yamazumi - 2009 - In Annalisa Sannino, Harry Daniels & Kris D. Gutierrez (eds.), Learning and expanding with activity theory. New York: Cambridge University Press. pp. 212--227.
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  • Probability in Biology: The Case of Fitness.Roberta L. Millstein - 2016 - In Alan Hájek & Christopher Hitchcock (eds.), The Oxford Handbook of Probability and Philosophy. Oxford: Oxford University Press. pp. 601-622.
    I argue that the propensity interpretation of fitness, properly understood, not only solves the explanatory circularity problem and the mismatch problem, but can also withstand the Pandora’s box full of problems that have been thrown at it. Fitness is the propensity (i.e., probabilistic ability, based on heritable physical traits) for organisms or types of organisms to survive and reproduce in particular environments and in particular populations for a specified number of generations; if greater than one generation, “reproduction” includes descendants of (...)
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  • Entangled Life: Organism and Environment in the Biological and Social Sciences.Gillian Barker, Eric Desjardins & Trevor Pearce (eds.) - 2014 - Dordrecht: Springer.
    Despite the burgeoning interest in new and more complex accounts of the organism-environment dyad by biologists and philosophers, little attention has been paid in the resulting discussions to the history of these ideas and to their deployment in disciplines outside biology—especially in the social sciences. Even in biology and philosophy, there is a lack of detailed conceptual models of the organism-environment relationship. This volume is designed to fill these lacunae by providing the first multidisciplinary discussion of the topic of organism-environment (...)
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